Wall clock time and date at job start Tue Mar 31 2020 14:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00326 * 2 1 4 4 H 1.48503 * 109.47081 * 269.99889 * 3 2 1 5 5 H 1.48504 * 109.47034 * 29.99465 * 3 2 1 6 6 H 1.48497 * 109.47345 * 149.99368 * 3 2 1 7 7 C 1.37884 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99416 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46758 * 179.97438 * 9 7 2 11 11 C 1.42899 * 114.00004 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47007 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 65.00337 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 H 1.08995 * 109.47294 * 54.99715 * 16 14 13 18 18 O 1.42900 * 109.47163 * 175.00355 * 16 14 13 19 19 C 1.53006 * 109.46821 * 295.00135 * 16 14 13 20 20 C 1.50706 * 109.46777 * 174.99654 * 19 16 14 21 21 C 1.38230 * 120.01118 * 264.72258 * 20 19 16 22 22 C 1.38214 * 120.01483 * 179.77346 * 21 20 19 23 23 C 1.38270 * 120.02605 * 0.50607 * 22 21 20 24 24 C 1.38191 * 120.01240 * 359.74722 * 23 22 21 25 25 C 1.38340 * 120.00317 * 85.00232 * 20 19 16 26 26 Cl 1.73599 * 120.01265 * 359.95024 * 25 20 19 27 27 H 0.96998 * 119.99720 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47500 * 60.00209 * 9 7 2 29 29 H 1.09001 * 109.47294 * 299.99344 * 9 7 2 30 30 H 1.09001 * 109.46782 * 59.99770 * 11 10 9 31 31 H 1.09002 * 109.46914 * 300.00219 * 11 10 9 32 32 H 1.08996 * 109.47090 * 304.99969 * 12 11 10 33 33 H 1.08999 * 109.47084 * 185.00141 * 12 11 10 34 34 H 0.96693 * 114.00380 * 59.99968 * 18 16 14 35 35 H 1.08998 * 109.47285 * 294.99687 * 19 16 14 36 36 H 1.09003 * 109.47338 * 55.00093 * 19 16 14 37 37 H 1.08000 * 119.99232 * 359.97438 * 21 20 19 38 38 H 1.07999 * 119.99163 * 180.23373 * 22 21 20 39 39 H 1.07999 * 119.99489 * 179.77041 * 23 22 21 40 40 H 1.08000 * 120.00664 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6480 -5.9562 0.0017 13 8 3.3992 -5.8880 1.2424 14 6 4.3933 -6.7757 1.4025 15 8 4.6283 -7.5826 0.5345 16 6 5.2169 -6.7651 2.6645 17 1 4.5584 -6.8494 3.5289 18 8 6.1263 -7.8673 2.6490 19 6 6.0039 -5.4557 2.7488 20 6 6.7313 -5.3909 4.0671 21 6 6.1629 -4.7277 5.1385 22 6 6.8279 -4.6722 6.3489 23 6 8.0666 -5.2709 6.4859 24 6 8.6383 -5.9298 5.4141 25 6 7.9707 -5.9901 4.2035 26 17 8.6879 -6.8181 2.8567 27 1 -0.4849 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 0.9446 -4.9827 -0.8886 31 1 0.9452 -4.9822 0.8914 32 1 3.3216 -5.7960 -0.8401 33 1 2.1821 -6.9375 -0.0874 34 1 6.7440 -7.8572 1.9051 35 1 6.7256 -5.4123 1.9331 36 1 5.3168 -4.6131 2.6712 37 1 5.1976 -4.2556 5.0307 38 1 6.3817 -4.1572 7.1868 39 1 8.5874 -5.2241 7.4309 40 1 9.6057 -6.3978 5.5213 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815236318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:04 Heat of formation + Delta-G solvation = -170.695008 kcal Electronic energy + Delta-G solvation = -25034.992237 eV Core-core repulsion = 21033.771358 eV Total energy + Delta-G solvation = -4001.220879 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72703 -39.67738 -37.65571 -36.77568 -36.63704 -35.95408 -33.28414 -32.80542 -30.98724 -30.48032 -29.14159 -26.97783 -25.30171 -22.96195 -22.62369 -22.25937 -21.59006 -21.02045 -18.34273 -17.54629 -17.11358 -16.62449 -16.45878 -16.13108 -15.83177 -15.60488 -15.38458 -14.74244 -14.65392 -14.35584 -14.10996 -13.91408 -13.46800 -13.38741 -12.94429 -12.77906 -12.32268 -12.10367 -11.98675 -11.94000 -11.81590 -11.50277 -11.47089 -11.24688 -10.97542 -10.88140 -10.79690 -10.78094 -10.45570 -10.19436 -10.05303 -9.17393 -9.16189 -8.92388 -8.87633 -8.25874 -6.15776 -4.17703 0.87546 0.97776 1.90664 2.09598 2.61017 3.27292 3.32580 3.34728 3.37516 3.94478 4.28476 4.35254 4.49227 4.58101 4.65087 4.69902 4.77289 4.80793 5.04098 5.09641 5.16979 5.20967 5.33053 5.39833 5.45812 5.60615 5.73053 5.81177 5.87722 5.93554 6.02066 6.10410 6.17090 6.47496 6.52230 7.01001 7.17282 7.35337 7.71050 7.74171 8.08195 8.47432 8.94671 9.47279 10.95752 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.003043 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.953625 B = 9198.351273 C =10852.191443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.337 6.337 14 C 0.431 3.569 15 O -0.507 6.507 16 C 0.128 3.872 17 H 0.139 0.861 18 O -0.527 6.527 19 C -0.117 4.117 20 C -0.068 4.068 21 C -0.099 4.099 22 C -0.114 4.114 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.018 4.018 26 Cl -0.067 7.067 27 H 0.264 0.736 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.380 0.620 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.352 -13.857 11.503 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C -0.001 4.001 13 O -0.253 6.253 14 C 0.274 3.726 15 O -0.396 6.396 16 C 0.067 3.933 17 H 0.156 0.844 18 O -0.334 6.334 19 C -0.155 4.155 20 C -0.068 4.068 21 C -0.117 4.117 22 C -0.132 4.132 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.045 4.045 26 Cl -0.038 7.038 27 H 0.074 0.926 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.231 0.769 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.180 -14.162 11.620 23.166 hybrid contribution 0.284 0.876 -0.844 1.249 sum 14.464 -13.287 10.776 22.403 Atomic orbital electron populations 1.69955 1.06115 1.27240 1.50428 1.24946 0.94976 0.99445 0.95075 0.86338 0.79678 0.82215 0.78282 1.20446 1.21035 1.19585 1.21038 0.94076 0.89268 1.50995 0.91510 1.20239 0.88733 0.83459 0.95519 1.87910 1.35350 1.12598 1.95238 1.22321 0.93204 0.85431 1.00646 1.23254 0.93726 0.98917 0.84164 1.86598 1.43300 1.53636 1.41731 1.24707 0.79923 0.78343 0.89673 1.90660 1.67941 1.37843 1.43155 1.21452 0.90303 0.87645 0.93891 0.84355 1.86674 1.48561 1.46152 1.51996 1.21348 1.00410 0.98341 0.95386 1.19481 0.93273 0.98073 0.96015 1.21177 1.00491 0.98144 0.91915 1.21274 0.95075 0.99161 0.97730 1.21128 0.95767 0.97569 0.98440 1.21021 1.00443 1.00305 0.91362 1.20768 0.94710 0.99298 0.89691 1.98340 1.82579 1.77250 1.45622 0.92595 0.97636 0.97469 0.91896 0.93128 0.90438 0.90357 0.76874 0.89266 0.87035 0.84378 0.85204 0.85205 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.45 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.89 9.43 -34.44 -0.32 -15.21 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.19 5.20 5.69 36.01 0.20 5.40 16 10 O -0.39 -9.17 10.30 -38.80 -0.40 -9.57 16 11 C 0.06 1.09 6.33 37.16 0.24 1.32 16 12 C 0.07 1.12 5.84 37.16 0.22 1.34 16 13 O -0.34 -5.30 10.16 -42.04 -0.43 -5.72 16 14 C 0.43 6.18 7.27 36.01 0.26 6.44 16 15 O -0.51 -8.34 16.07 -25.46 -0.41 -8.75 16 16 C 0.13 1.46 3.48 -27.88 -0.10 1.37 16 17 H 0.14 1.37 8.14 -51.93 -0.42 0.95 16 18 O -0.53 -6.25 11.13 -55.13 -0.61 -6.86 16 19 C -0.12 -1.27 4.67 -27.88 -0.13 -1.40 16 20 C -0.07 -0.70 5.03 -104.58 -0.53 -1.22 16 21 C -0.10 -0.92 9.68 -39.59 -0.38 -1.30 16 22 C -0.11 -0.92 10.05 -39.58 -0.40 -1.31 16 23 C -0.11 -0.84 10.05 -39.59 -0.40 -1.24 16 24 C -0.11 -0.97 9.83 -39.55 -0.39 -1.36 16 25 C -0.02 -0.18 6.06 -39.49 -0.24 -0.42 16 26 Cl -0.07 -0.66 24.27 -51.86 -1.26 -1.91 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 33 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 34 H 0.38 4.20 7.03 45.56 0.32 4.52 16 35 H 0.09 0.98 7.13 -51.93 -0.37 0.61 16 36 H 0.11 1.26 8.02 -51.93 -0.42 0.84 16 37 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -33.07 362.45 -8.66 -41.73 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.66 Total: 0.95 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.06 Total: -6.08 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.85 Total: -30.90 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.26 Total: -1.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.07 -8.66 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815236318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.970 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds