Wall clock time and date at job start Tue Mar 31 2020 14:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00326 * 2 1 4 4 H 1.48503 * 109.47081 * 269.99889 * 3 2 1 5 5 H 1.48504 * 109.47034 * 29.99465 * 3 2 1 6 6 H 1.48497 * 109.47345 * 149.99368 * 3 2 1 7 7 C 1.37884 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99416 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46758 * 179.97438 * 9 7 2 11 11 C 1.42899 * 114.00004 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47007 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 65.00337 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 H 1.08995 * 109.47294 * 54.99715 * 16 14 13 18 18 O 1.42900 * 109.47163 * 175.00355 * 16 14 13 19 19 C 1.53006 * 109.46821 * 295.00135 * 16 14 13 20 20 C 1.50706 * 109.46777 * 174.99654 * 19 16 14 21 21 C 1.38230 * 120.01118 * 264.72258 * 20 19 16 22 22 C 1.38214 * 120.01483 * 179.77346 * 21 20 19 23 23 C 1.38270 * 120.02605 * 0.50607 * 22 21 20 24 24 C 1.38191 * 120.01240 * 359.74722 * 23 22 21 25 25 C 1.38340 * 120.00317 * 85.00232 * 20 19 16 26 26 Cl 1.73599 * 120.01265 * 359.95024 * 25 20 19 27 27 H 0.96998 * 119.99720 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47500 * 60.00209 * 9 7 2 29 29 H 1.09001 * 109.47294 * 299.99344 * 9 7 2 30 30 H 1.09001 * 109.46782 * 59.99770 * 11 10 9 31 31 H 1.09002 * 109.46914 * 300.00219 * 11 10 9 32 32 H 1.08996 * 109.47090 * 304.99969 * 12 11 10 33 33 H 1.08999 * 109.47084 * 185.00141 * 12 11 10 34 34 H 0.96693 * 114.00380 * 59.99968 * 18 16 14 35 35 H 1.08998 * 109.47285 * 294.99687 * 19 16 14 36 36 H 1.09003 * 109.47338 * 55.00093 * 19 16 14 37 37 H 1.08000 * 119.99232 * 359.97438 * 21 20 19 38 38 H 1.07999 * 119.99163 * 180.23373 * 22 21 20 39 39 H 1.07999 * 119.99489 * 179.77041 * 23 22 21 40 40 H 1.08000 * 120.00664 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6480 -5.9562 0.0017 13 8 3.3992 -5.8880 1.2424 14 6 4.3933 -6.7757 1.4025 15 8 4.6283 -7.5826 0.5345 16 6 5.2169 -6.7651 2.6645 17 1 4.5584 -6.8494 3.5289 18 8 6.1263 -7.8673 2.6490 19 6 6.0039 -5.4557 2.7488 20 6 6.7313 -5.3909 4.0671 21 6 6.1629 -4.7277 5.1385 22 6 6.8279 -4.6722 6.3489 23 6 8.0666 -5.2709 6.4859 24 6 8.6383 -5.9298 5.4141 25 6 7.9707 -5.9901 4.2035 26 17 8.6879 -6.8181 2.8567 27 1 -0.4849 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 0.9446 -4.9827 -0.8886 31 1 0.9452 -4.9822 0.8914 32 1 3.3216 -5.7960 -0.8401 33 1 2.1821 -6.9375 -0.0874 34 1 6.7440 -7.8572 1.9051 35 1 6.7256 -5.4123 1.9331 36 1 5.3168 -4.6131 2.6712 37 1 5.1976 -4.2556 5.0307 38 1 6.3817 -4.1572 7.1868 39 1 8.5874 -5.2241 7.4309 40 1 9.6057 -6.3978 5.5213 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815236318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:03 Heat of formation + Delta-G solvation = -190.439262 kcal Electronic energy + Delta-G solvation = -25035.848412 eV Core-core repulsion = 21033.771358 eV Total energy + Delta-G solvation = -4002.077054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85936 -40.42738 -38.94627 -38.16604 -37.40163 -37.20804 -34.94694 -34.06920 -31.87313 -31.62820 -30.15361 -28.96630 -26.24009 -24.56563 -23.73157 -23.61400 -22.42752 -22.07921 -19.42157 -18.76070 -18.47158 -18.03092 -17.75660 -17.23202 -16.91687 -16.80318 -16.39851 -16.23114 -16.14919 -15.58471 -15.35879 -14.75308 -14.57566 -14.36812 -14.07478 -14.04540 -13.73320 -13.29877 -13.16121 -13.04763 -12.91184 -12.71085 -12.68651 -12.55733 -12.46229 -12.17388 -12.12726 -11.96950 -11.78506 -11.55887 -11.28624 -11.21549 -10.88782 -10.27028 -9.83759 -9.57670 -8.31894 -6.43825 0.19330 0.31580 0.95792 1.19131 1.41376 1.43411 1.49198 1.55529 2.34702 2.67450 3.02235 3.02449 3.05465 3.43655 3.69103 3.73778 3.82849 3.89831 3.99605 4.08384 4.17037 4.39077 4.39526 4.44725 4.49751 4.62485 4.64846 4.69056 4.86063 4.86156 5.02072 5.17958 5.28017 5.30917 5.44434 5.52527 5.54972 5.90297 5.95552 6.23051 6.49384 6.57565 6.79810 7.27824 8.80281 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.003043 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.953625 B = 9198.351273 C =10852.191443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.407 6.407 11 C 0.054 3.946 12 C 0.076 3.924 13 O -0.349 6.349 14 C 0.434 3.566 15 O -0.530 6.530 16 C 0.136 3.864 17 H 0.156 0.844 18 O -0.529 6.529 19 C -0.110 4.110 20 C -0.083 4.083 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.034 4.034 26 Cl -0.073 7.073 27 H 0.271 0.729 28 H -0.010 1.010 29 H -0.009 1.009 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.383 0.617 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.143 0.857 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.334 -13.431 12.845 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.327 6.327 11 C -0.023 4.023 12 C 0.002 3.998 13 O -0.265 6.265 14 C 0.278 3.722 15 O -0.420 6.420 16 C 0.075 3.925 17 H 0.174 0.826 18 O -0.337 6.337 19 C -0.148 4.148 20 C -0.084 4.084 21 C -0.129 4.129 22 C -0.134 4.134 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.061 4.061 26 Cl -0.044 7.044 27 H 0.080 0.920 28 H 0.008 0.992 29 H 0.009 0.991 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.234 0.766 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.161 0.839 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 15.165 -13.761 12.963 24.236 hybrid contribution -0.032 0.659 -1.222 1.389 sum 15.133 -13.102 11.740 23.206 Atomic orbital electron populations 1.70054 1.07684 1.28664 1.50453 1.25911 0.95925 1.03236 0.93928 0.85227 0.78471 0.77222 0.78784 1.19474 1.19879 1.18819 1.21379 0.94106 0.90849 1.52293 0.92069 1.19866 0.88546 0.84350 0.93879 1.87857 1.35457 1.14100 1.95334 1.22631 0.94391 0.83329 1.01912 1.23228 0.93229 0.99253 0.84052 1.86597 1.43841 1.54289 1.41757 1.25289 0.79352 0.77394 0.90201 1.90645 1.68469 1.38716 1.44202 1.21562 0.90115 0.87928 0.92847 0.82645 1.86666 1.48563 1.46369 1.52098 1.21234 1.00036 0.97525 0.95997 1.19469 0.93702 0.99323 0.95881 1.21356 1.00967 0.98259 0.92304 1.21593 0.95181 0.98809 0.97808 1.21499 0.95566 0.96263 0.99190 1.21304 1.01063 1.00362 0.91061 1.20955 0.94995 0.99892 0.90215 1.98332 1.82606 1.77396 1.46046 0.92016 0.99192 0.99124 0.90132 0.92322 0.90987 0.87464 0.76579 0.89845 0.87837 0.83947 0.83001 0.82406 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.98 43.52 29.54 68.60 2.03 45.55 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -32.09 9.43 25.60 0.24 -31.85 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.40 5.69 71.24 0.41 11.80 16 10 O -0.41 -19.37 10.30 -145.57 -1.50 -20.87 16 11 C 0.05 1.90 6.33 71.98 0.46 2.35 16 12 C 0.08 2.28 5.84 71.98 0.42 2.70 16 13 O -0.35 -10.86 10.16 -48.81 -0.50 -11.35 16 14 C 0.43 12.30 7.27 71.24 0.52 12.82 16 15 O -0.53 -17.29 16.07 28.39 0.46 -16.83 16 16 C 0.14 3.06 3.48 29.85 0.10 3.16 16 17 H 0.16 2.94 8.14 -2.39 -0.02 2.92 16 18 O -0.53 -12.31 11.13 -129.95 -1.45 -13.76 16 19 C -0.11 -2.39 4.67 29.85 0.14 -2.25 16 20 C -0.08 -1.66 5.03 -19.84 -0.10 -1.76 16 21 C -0.11 -1.94 9.68 22.26 0.22 -1.72 16 22 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 23 C -0.11 -1.36 10.05 22.27 0.22 -1.14 16 24 C -0.12 -1.86 9.83 22.29 0.22 -1.64 16 25 C -0.03 -0.66 6.06 22.33 0.14 -0.53 16 26 Cl -0.07 -1.40 24.27 -2.72 -0.07 -1.47 16 27 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 28 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 33 H 0.11 2.63 8.13 -2.39 -0.02 2.61 16 34 H 0.38 8.43 7.03 -74.06 -0.52 7.91 16 35 H 0.08 1.87 7.13 -2.39 -0.02 1.85 16 36 H 0.10 2.38 8.02 -2.39 -0.02 2.36 16 37 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -70.38 362.45 3.47 -66.91 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.54 Total: 14.80 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 3.66 Total: -8.48 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.28 Total: -54.50 kcal Atomic # 8 Polarization: -59.83 SS G_CDS: -2.98 Total: -62.82 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.07 Total: -1.47 kcal Total: -70.38 3.47 -66.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815236318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.528 kcal (2) G-P(sol) polarization free energy of solvation -70.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds