Wall clock time and date at job start Tue Mar 31 2020 15:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.47372 * 2 1 4 4 C 1.50693 * 109.47164 * 120.00067 * 2 1 3 5 5 O 1.20827 * 120.00365 * 94.99834 * 4 2 1 6 6 O 1.34233 * 119.99944 * 274.99758 * 4 2 1 7 7 C 1.45206 * 116.99584 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46492 * 180.02562 * 7 6 4 9 9 O 1.42893 * 109.47187 * 65.00126 * 8 7 6 10 10 C 1.42902 * 113.99940 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47523 * 180.02562 * 10 9 8 12 12 H 1.08006 * 119.99532 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00387 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00141 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99968 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47220 * 59.99969 * 15 13 11 17 17 H 1.48498 * 109.46825 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46887 * 299.99837 * 15 13 11 19 19 C 1.50700 * 109.47036 * 240.00097 * 2 1 3 20 20 C 1.38239 * 119.98824 * 330.29825 * 19 2 1 21 21 C 1.38212 * 120.01553 * 180.25745 * 20 19 2 22 22 C 1.38361 * 119.98341 * 359.46433 * 21 20 19 23 23 Cl 1.73597 * 120.00859 * 180.27890 * 22 21 20 24 24 C 1.38346 * 119.97306 * 0.25744 * 22 21 20 25 25 C 1.38210 * 119.98768 * 0.02562 * 24 22 21 26 26 H 1.08995 * 109.47390 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47044 * 300.00366 * 1 2 3 28 28 H 1.09005 * 109.46825 * 59.99839 * 1 2 3 29 29 H 0.96696 * 114.00075 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47460 * 299.99826 * 7 6 4 31 31 H 1.08998 * 109.47300 * 60.00612 * 7 6 4 32 32 H 1.09000 * 109.46925 * 185.00029 * 8 7 6 33 33 H 1.08997 * 109.47010 * 304.99606 * 8 7 6 34 34 H 1.09000 * 109.47216 * 299.99789 * 10 9 8 35 35 H 1.08997 * 109.47185 * 59.99651 * 10 9 8 36 36 H 0.96997 * 120.00071 * 180.02562 * 14 13 11 37 37 H 1.08004 * 119.99430 * 359.97438 * 20 19 2 38 38 H 1.08002 * 120.01126 * 179.75014 * 21 20 19 39 39 H 1.08002 * 120.00348 * 180.02562 * 24 22 21 40 40 H 1.08002 * 119.99295 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3197 -1.8827 1.1762 6 8 2.1606 -0.0407 2.3867 7 6 2.6496 -0.7890 3.5310 8 6 2.7279 0.1345 4.7484 9 8 1.4123 0.5598 5.1090 10 6 1.3729 1.4307 6.2413 11 6 -0.0555 1.8137 6.5311 12 1 -0.8535 1.4307 5.9122 13 6 -0.3437 2.6530 7.5863 14 7 0.6279 3.1190 8.3403 15 14 -2.1143 3.1283 7.9450 16 1 -2.9066 1.9057 8.2324 17 1 -2.1552 4.0332 9.1217 18 1 -2.6885 3.8245 6.7657 19 6 2.0323 -0.7104 -1.2305 20 6 1.2821 -1.7232 -1.7982 21 6 1.7447 -2.3787 -2.9236 22 6 2.9538 -2.0135 -3.4885 23 17 3.5321 -2.8315 -4.9062 24 6 3.7015 -0.9959 -2.9232 25 6 3.2405 -0.3452 -1.7944 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.9704 1.4236 -0.0004 30 1 1.9691 -1.6134 3.7439 31 1 3.6411 -1.1841 3.3099 32 1 3.1778 -0.4025 5.5834 33 1 3.3374 1.0049 4.5055 34 1 1.7945 0.9202 7.1072 35 1 1.9543 2.3280 6.0299 36 1 0.4250 3.7092 9.0829 37 1 0.3363 -2.0055 -1.3596 38 1 1.1604 -3.1727 -3.3648 39 1 4.6452 -0.7102 -3.3639 40 1 3.8243 0.4489 -1.3528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815502524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:18 Heat of formation + Delta-G solvation = -183.071764 kcal Electronic energy + Delta-G solvation = -25021.201286 eV Core-core repulsion = 21019.443710 eV Total energy + Delta-G solvation = -4001.757576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.16378 -40.49517 -38.82591 -38.26299 -37.52116 -37.25657 -34.94313 -33.61370 -32.06540 -31.74645 -30.29072 -29.04316 -26.29116 -24.60974 -24.19601 -23.73644 -23.04402 -21.40957 -19.85754 -18.74012 -18.63010 -18.11357 -17.96651 -17.17846 -17.09151 -16.61918 -16.38966 -16.25609 -15.71561 -15.40850 -14.91727 -14.82813 -14.60637 -14.51772 -14.07476 -13.85734 -13.72032 -13.43975 -13.20591 -13.15972 -13.00324 -12.93060 -12.69222 -12.55075 -12.52952 -12.43169 -12.00248 -11.96645 -11.79513 -11.78521 -11.30345 -11.18246 -10.88414 -10.27518 -10.09701 -9.75484 -8.31957 -6.44073 -0.09517 0.23639 0.89730 1.06883 1.40729 1.45336 1.49203 1.53641 2.34668 2.52644 2.95225 3.01874 3.04668 3.24095 3.46047 3.56836 3.83499 3.88413 3.92014 4.07516 4.22992 4.36709 4.37597 4.47238 4.53735 4.60411 4.61604 4.68284 4.84824 4.88319 4.99890 5.10737 5.15639 5.17223 5.28236 5.33566 5.54129 5.66564 5.95048 6.30356 6.49528 6.62167 6.79089 7.27225 8.79874 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.002130 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.213690 B =13143.193602 C =13536.332534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.200 3.800 3 O -0.534 6.534 4 C 0.436 3.564 5 O -0.517 6.517 6 O -0.345 6.345 7 C 0.074 3.926 8 C 0.054 3.946 9 O -0.408 6.408 10 C 0.208 3.792 11 C -0.550 4.550 12 H 0.060 0.940 13 C 0.007 3.993 14 N -0.928 5.928 15 Si 0.982 3.018 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.266 1.266 19 C -0.113 4.113 20 C -0.086 4.086 21 C -0.113 4.113 22 C -0.037 4.037 23 Cl -0.067 7.067 24 C -0.111 4.111 25 C -0.098 4.098 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.394 0.606 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.057 0.943 34 H -0.008 1.008 35 H -0.011 1.011 36 H 0.271 0.729 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.078 -9.545 -25.431 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 O -0.343 6.343 4 C 0.279 3.721 5 O -0.406 6.406 6 O -0.261 6.261 7 C 0.001 3.999 8 C -0.023 4.023 9 O -0.329 6.329 10 C 0.134 3.866 11 C -0.588 4.588 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.568 5.568 15 Si 0.805 3.195 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.191 1.191 19 C -0.114 4.114 20 C -0.104 4.104 21 C -0.132 4.132 22 C -0.064 4.064 23 Cl -0.038 7.038 24 C -0.129 4.129 25 C -0.116 4.116 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.246 0.754 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.010 0.990 35 H 0.007 0.993 36 H 0.080 0.920 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.173 0.827 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.487 -9.777 -25.469 27.828 hybrid contribution 0.470 0.004 0.718 0.858 sum 5.957 -9.772 -24.751 27.269 Atomic orbital electron populations 1.21990 0.88297 1.04649 1.05471 1.19764 0.97593 0.81849 0.85112 1.86716 1.28767 1.22520 1.96274 1.25078 0.74572 0.86599 0.85898 1.90656 1.46314 1.17806 1.85795 1.86682 1.76488 1.44096 1.18853 1.23256 1.00930 0.93825 0.81862 1.22638 0.86413 0.98130 0.95132 1.87859 1.27244 1.67333 1.50431 1.19864 0.97033 0.87197 0.82554 1.21343 0.92955 1.29943 1.14513 0.92173 1.25946 1.03249 0.95075 0.94934 1.70050 1.34254 1.33586 1.18865 0.85251 0.77756 0.78501 0.78030 1.19024 1.19934 1.19062 1.20068 0.96712 0.98416 0.96210 1.21228 1.00478 0.93899 0.94795 1.21273 0.94990 1.00795 0.96108 1.21195 0.96434 0.97231 0.91540 1.98380 1.88589 1.78243 1.38601 1.21218 1.00819 0.94928 0.95982 1.21118 0.94778 0.99948 0.95725 0.88690 0.91354 0.87838 0.75447 0.90984 0.87222 0.90024 0.92493 0.98999 0.99293 0.92005 0.83343 0.82905 0.82735 0.82987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.12 71.98 0.58 -2.37 16 2 C 0.20 4.37 1.22 -12.29 -0.01 4.35 16 3 O -0.53 -11.44 12.51 -135.70 -1.70 -13.13 16 4 C 0.44 12.12 6.79 71.23 0.48 12.61 16 5 O -0.52 -15.81 15.99 21.96 0.35 -15.46 16 6 O -0.35 -11.14 9.94 -45.02 -0.45 -11.59 16 7 C 0.07 2.26 5.85 71.98 0.42 2.68 16 8 C 0.05 1.92 6.33 71.98 0.46 2.37 16 9 O -0.41 -19.99 10.30 -145.57 -1.50 -21.49 16 10 C 0.21 11.64 5.69 71.24 0.41 12.05 16 11 C -0.55 -32.83 9.43 25.60 0.24 -32.59 16 12 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 13 C 0.01 0.38 5.46 84.65 0.46 0.85 16 14 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 15 Si 0.98 44.27 29.54 68.60 2.03 46.29 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 C -0.11 -2.12 4.24 -19.86 -0.08 -2.21 16 20 C -0.09 -1.46 9.11 22.26 0.20 -1.26 16 21 C -0.11 -1.75 9.83 22.29 0.22 -1.53 16 22 C -0.04 -0.59 6.32 22.32 0.14 -0.45 16 23 Cl -0.07 -0.99 28.96 -2.72 -0.08 -1.07 16 24 C -0.11 -1.62 9.83 22.29 0.22 -1.40 16 25 C -0.10 -1.52 9.32 22.26 0.21 -1.31 16 26 H 0.09 1.59 6.51 -2.39 -0.02 1.57 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.39 5.56 7.32 -74.06 -0.54 5.02 16 30 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 31 H 0.11 2.61 8.13 -2.39 -0.02 2.59 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.15 2.09 6.16 -2.91 -0.02 2.08 16 38 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.15 1.59 6.49 -2.91 -0.02 1.57 16 Total: -1.00 -73.07 363.20 3.41 -69.65 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.53 Total: 10.15 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 3.94 Total: -8.22 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.28 Total: -55.15 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -3.29 Total: -61.66 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -73.07 3.41 -69.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815502524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.419 kcal (2) G-P(sol) polarization free energy of solvation -73.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds