Wall clock time and date at job start Tue Mar 31 2020 15:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00325 * 2 1 3 5 5 O 1.20826 * 119.99783 * 265.00219 * 4 2 1 6 6 O 1.34224 * 120.00322 * 84.99548 * 4 2 1 7 7 C 1.45193 * 117.00372 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47677 * 180.02562 * 7 6 4 9 9 O 1.42898 * 109.46884 * 65.00069 * 8 7 6 10 10 C 1.42903 * 114.00304 * 180.02562 * 9 8 7 11 11 C 1.50691 * 109.47483 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99965 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00256 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99881 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00172 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47084 * 90.00177 * 15 13 11 17 17 H 1.48503 * 109.47082 * 210.00156 * 15 13 11 18 18 H 1.48495 * 109.46984 * 329.99967 * 15 13 11 19 19 C 1.50697 * 109.47466 * 119.99976 * 2 1 3 20 20 C 1.38245 * 119.98297 * 29.72893 * 19 2 1 21 21 C 1.38217 * 120.00918 * 179.72861 * 20 19 2 22 22 C 1.38355 * 119.98998 * 0.54269 * 21 20 19 23 23 Cl 1.73594 * 120.01567 * 179.70651 * 22 21 20 24 24 C 1.38357 * 119.96972 * 359.73027 * 22 21 20 25 25 C 1.38217 * 119.98646 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 29 29 H 0.96693 * 114.00047 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47673 * 300.00615 * 7 6 4 31 31 H 1.09006 * 109.46830 * 60.00185 * 7 6 4 32 32 H 1.08999 * 109.47397 * 185.00690 * 8 7 6 33 33 H 1.09006 * 109.46885 * 305.00785 * 8 7 6 34 34 H 1.09001 * 109.46898 * 300.00297 * 10 9 8 35 35 H 1.08998 * 109.46986 * 59.99687 * 10 9 8 36 36 H 0.96992 * 119.99904 * 179.97438 * 14 13 11 37 37 H 1.07995 * 119.99505 * 359.97438 * 20 19 2 38 38 H 1.07999 * 120.00338 * 180.27325 * 21 20 19 39 39 H 1.07997 * 120.00498 * 179.97438 * 24 22 21 40 40 H 1.07997 * 119.98993 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3197 -1.8827 -1.1763 6 8 2.1605 -0.0408 -2.3868 7 6 2.6506 -0.7885 -3.5308 8 6 2.7299 0.1351 -4.7480 9 8 3.7078 1.1502 -4.5127 10 6 3.8611 2.0715 -5.5943 11 6 4.9118 3.0918 -5.2400 12 1 5.4122 3.0421 -4.2842 13 6 5.2343 4.0890 -6.1359 14 7 4.6253 4.1493 -7.3000 15 14 6.5364 5.3543 -5.6964 16 1 7.8681 4.8684 -6.1387 17 1 6.2276 6.6386 -6.3750 18 1 6.5484 5.5618 -4.2261 19 6 2.0324 -0.7104 1.2304 20 6 1.2824 -1.7236 1.7978 21 6 1.7453 -2.3793 2.9230 22 6 2.9542 -2.0139 3.4881 23 17 3.5326 -2.8319 4.9058 24 6 3.7016 -0.9959 2.9231 25 6 3.2405 -0.3451 1.7942 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 2.9703 1.4236 -0.0004 30 1 3.6423 -1.1830 -3.3093 31 1 1.9708 -1.6135 -3.7439 32 1 3.0123 -0.4450 -5.6265 33 1 1.7578 0.5990 -4.9159 34 1 4.1668 1.5318 -6.4907 35 1 2.9125 2.5754 -5.7795 36 1 4.8519 4.8509 -7.9301 37 1 0.3365 -2.0056 1.3595 38 1 1.1614 -3.1739 3.3637 39 1 4.6451 -0.7100 3.3639 40 1 3.8241 0.4492 1.3529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815502525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:28 Heat of formation + Delta-G solvation = -161.747113 kcal Electronic energy + Delta-G solvation = -25100.914861 eV Core-core repulsion = 21100.081992 eV Total energy + Delta-G solvation = -4000.832869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -41.15567 -39.61097 -37.61028 -37.00476 -36.56674 -36.09508 -32.81437 -32.77628 -31.37751 -30.29183 -29.49431 -26.99626 -25.33832 -23.25860 -23.06849 -22.39633 -21.81706 -20.46386 -18.87907 -17.84990 -17.05814 -16.67704 -16.40265 -16.29036 -15.93496 -15.34689 -15.00591 -14.74579 -14.45884 -14.14999 -13.98358 -13.86559 -13.80059 -13.17070 -12.98592 -12.85987 -12.51758 -12.39412 -12.19078 -11.92228 -11.86147 -11.76690 -11.46527 -11.18666 -11.07671 -10.96091 -10.86313 -10.77953 -10.45431 -10.17002 -10.03564 -9.42703 -9.15269 -9.04179 -8.89752 -8.23545 -6.13523 -4.15270 0.63264 0.90587 1.74629 2.01002 2.52164 3.25955 3.29078 3.34176 3.39424 3.78123 4.03588 4.26903 4.30321 4.45740 4.52106 4.63421 4.70521 4.87785 5.04031 5.14927 5.21026 5.23170 5.31957 5.33095 5.39201 5.51279 5.68538 5.78830 5.81363 5.82648 5.88015 6.02819 6.03060 6.33002 6.45251 7.03150 7.13381 7.37828 7.69477 7.76137 8.10472 8.49664 8.96804 9.49471 10.98048 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.002407 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.046336 B =11628.410447 C =12499.189347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.192 3.808 3 O -0.524 6.524 4 C 0.435 3.565 5 O -0.501 6.501 6 O -0.325 6.325 7 C 0.071 3.929 8 C 0.062 3.938 9 O -0.390 6.390 10 C 0.195 3.805 11 C -0.514 4.514 12 H 0.067 0.933 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.909 3.091 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.100 4.100 20 C -0.079 4.079 21 C -0.110 4.110 22 C -0.029 4.029 23 Cl -0.070 7.070 24 C -0.106 4.106 25 C -0.091 4.091 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.387 0.613 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.006 0.994 35 H 0.008 0.992 36 H 0.264 0.736 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 -13.193 20.532 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.149 3.851 3 O -0.331 6.331 4 C 0.276 3.724 5 O -0.389 6.389 6 O -0.240 6.240 7 C -0.003 4.003 8 C -0.016 4.016 9 O -0.310 6.310 10 C 0.121 3.879 11 C -0.553 4.553 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.736 3.264 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.101 4.101 20 C -0.097 4.097 21 C -0.128 4.128 22 C -0.055 4.055 23 Cl -0.042 7.042 24 C -0.125 4.125 25 C -0.109 4.109 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.237 0.763 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.867 -13.349 20.621 26.116 hybrid contribution 1.295 0.263 -0.224 1.341 sum -7.572 -13.086 20.397 25.390 Atomic orbital electron populations 1.21894 0.89062 1.03534 1.05415 1.19726 0.96982 0.82295 0.86048 1.86692 1.27998 1.22137 1.96318 1.24461 0.75417 0.86572 0.85984 1.90674 1.45498 1.17144 1.85550 1.86680 1.75712 1.43408 1.18238 1.23290 0.99847 0.93842 0.83293 1.22309 0.94250 0.91343 0.93653 1.87907 1.57242 1.41304 1.44586 1.20238 0.96563 0.86765 0.84383 1.21027 1.20690 1.10574 1.02969 0.91528 1.24954 0.96958 0.97852 0.94762 1.69958 1.42213 1.34030 1.07566 0.86323 0.81174 0.80184 0.78741 1.20488 1.21049 1.19567 1.20072 0.95811 0.97727 0.96453 1.20993 0.99917 0.94143 0.94627 1.21040 0.94868 1.00549 0.96376 1.21003 0.96165 0.97001 0.91355 1.98378 1.88653 1.78299 1.38823 1.21001 1.00194 0.95171 0.96133 1.20896 0.94988 0.99489 0.95508 0.89505 0.90102 0.89791 0.76321 0.90478 0.90375 0.91909 0.93107 0.97649 0.97449 0.92616 0.84471 0.84544 0.84436 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.12 37.16 0.30 -0.98 16 2 C 0.19 2.18 1.22 -92.92 -0.11 2.07 16 3 O -0.52 -6.32 12.50 -49.11 -0.61 -6.93 16 4 C 0.43 6.17 6.79 36.01 0.24 6.42 16 5 O -0.50 -7.87 15.99 -18.75 -0.30 -8.17 16 6 O -0.33 -5.29 9.94 -45.96 -0.46 -5.75 16 7 C 0.07 1.10 5.84 37.16 0.22 1.31 16 8 C 0.06 1.12 6.33 37.16 0.24 1.35 16 9 O -0.39 -9.31 10.30 -38.80 -0.40 -9.71 16 10 C 0.19 5.27 5.69 36.00 0.20 5.48 16 11 C -0.51 -15.03 9.43 -34.44 -0.32 -15.35 16 12 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 15 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.10 -1.04 4.24 -104.62 -0.44 -1.48 16 20 C -0.08 -0.72 9.11 -39.59 -0.36 -1.08 16 21 C -0.11 -0.95 9.83 -39.55 -0.39 -1.34 16 22 C -0.03 -0.27 6.32 -39.49 -0.25 -0.52 16 23 Cl -0.07 -0.61 28.96 -51.86 -1.50 -2.11 16 24 C -0.11 -0.97 9.83 -39.55 -0.39 -1.36 16 25 C -0.09 -0.88 9.32 -39.59 -0.37 -1.25 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.58 6.51 -51.93 -0.34 0.24 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.39 3.79 7.32 45.56 0.33 4.12 16 30 H 0.08 1.22 8.13 -51.93 -0.42 0.79 16 31 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.14 0.98 6.16 -52.49 -0.32 0.66 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.07 6.49 -52.49 -0.34 0.73 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -34.01 363.20 -8.06 -42.06 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.44 Total: -0.38 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.53 Total: -5.21 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -1.77 Total: -30.56 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.01 -8.06 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815502525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.683 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds