Wall clock time and date at job start Tue Mar 31 2020 15:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00325 * 2 1 3 5 5 O 1.20826 * 119.99783 * 265.00219 * 4 2 1 6 6 O 1.34224 * 120.00322 * 84.99548 * 4 2 1 7 7 C 1.45193 * 117.00372 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47677 * 180.02562 * 7 6 4 9 9 O 1.42898 * 109.46884 * 65.00069 * 8 7 6 10 10 C 1.42903 * 114.00304 * 180.02562 * 9 8 7 11 11 C 1.50691 * 109.47483 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99965 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00256 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99881 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00172 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47084 * 90.00177 * 15 13 11 17 17 H 1.48503 * 109.47082 * 210.00156 * 15 13 11 18 18 H 1.48495 * 109.46984 * 329.99967 * 15 13 11 19 19 C 1.50697 * 109.47466 * 119.99976 * 2 1 3 20 20 C 1.38245 * 119.98297 * 29.72893 * 19 2 1 21 21 C 1.38217 * 120.00918 * 179.72861 * 20 19 2 22 22 C 1.38355 * 119.98998 * 0.54269 * 21 20 19 23 23 Cl 1.73594 * 120.01567 * 179.70651 * 22 21 20 24 24 C 1.38357 * 119.96972 * 359.73027 * 22 21 20 25 25 C 1.38217 * 119.98646 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 29 29 H 0.96693 * 114.00047 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47673 * 300.00615 * 7 6 4 31 31 H 1.09006 * 109.46830 * 60.00185 * 7 6 4 32 32 H 1.08999 * 109.47397 * 185.00690 * 8 7 6 33 33 H 1.09006 * 109.46885 * 305.00785 * 8 7 6 34 34 H 1.09001 * 109.46898 * 300.00297 * 10 9 8 35 35 H 1.08998 * 109.46986 * 59.99687 * 10 9 8 36 36 H 0.96992 * 119.99904 * 179.97438 * 14 13 11 37 37 H 1.07995 * 119.99505 * 359.97438 * 20 19 2 38 38 H 1.07999 * 120.00338 * 180.27325 * 21 20 19 39 39 H 1.07997 * 120.00498 * 179.97438 * 24 22 21 40 40 H 1.07997 * 119.98993 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3197 -1.8827 -1.1763 6 8 2.1605 -0.0408 -2.3868 7 6 2.6506 -0.7885 -3.5308 8 6 2.7299 0.1351 -4.7480 9 8 3.7078 1.1502 -4.5127 10 6 3.8611 2.0715 -5.5943 11 6 4.9118 3.0918 -5.2400 12 1 5.4122 3.0421 -4.2842 13 6 5.2343 4.0890 -6.1359 14 7 4.6253 4.1493 -7.3000 15 14 6.5364 5.3543 -5.6964 16 1 7.8681 4.8684 -6.1387 17 1 6.2276 6.6386 -6.3750 18 1 6.5484 5.5618 -4.2261 19 6 2.0324 -0.7104 1.2304 20 6 1.2824 -1.7236 1.7978 21 6 1.7453 -2.3793 2.9230 22 6 2.9542 -2.0139 3.4881 23 17 3.5326 -2.8319 4.9058 24 6 3.7016 -0.9959 2.9231 25 6 3.2405 -0.3451 1.7942 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 2.9703 1.4236 -0.0004 30 1 3.6423 -1.1830 -3.3093 31 1 1.9708 -1.6135 -3.7439 32 1 3.0123 -0.4450 -5.6265 33 1 1.7578 0.5990 -4.9159 34 1 4.1668 1.5318 -6.4907 35 1 2.9125 2.5754 -5.7795 36 1 4.8519 4.8509 -7.9301 37 1 0.3365 -2.0056 1.3595 38 1 1.1614 -3.1739 3.3637 39 1 4.6451 -0.7100 3.3639 40 1 3.8241 0.4492 1.3529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815502525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:25 Heat of formation + Delta-G solvation = -183.066299 kcal Electronic energy + Delta-G solvation = -25101.839331 eV Core-core repulsion = 21100.081992 eV Total energy + Delta-G solvation = -4001.757339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -42.15552 -40.49431 -38.82281 -38.25274 -37.51553 -37.25717 -34.94238 -33.60092 -32.06461 -31.74605 -30.28653 -29.04364 -26.26728 -24.60706 -24.19980 -23.74404 -23.04193 -21.39673 -19.83773 -18.74611 -18.63224 -18.11263 -17.96090 -17.19063 -17.04751 -16.65452 -16.35467 -16.28894 -15.71586 -15.39937 -14.95117 -14.77579 -14.57790 -14.51901 -14.10496 -13.90022 -13.73503 -13.36622 -13.19190 -13.16171 -12.98217 -12.91837 -12.69963 -12.56105 -12.53105 -12.43541 -12.00662 -11.95431 -11.79909 -11.77852 -11.28988 -11.17579 -10.88745 -10.27544 -10.10228 -9.75725 -8.32075 -6.44084 -0.09858 0.23022 0.90955 1.06335 1.41044 1.43584 1.49300 1.55691 2.34711 2.52547 2.96658 3.02050 3.04393 3.24765 3.46961 3.57268 3.82774 3.88583 3.92735 4.06888 4.22494 4.36776 4.38520 4.47265 4.54226 4.61135 4.63711 4.68860 4.85042 4.87874 5.00982 5.10508 5.14990 5.17226 5.28723 5.33183 5.54541 5.66410 5.95103 6.26489 6.49333 6.61256 6.79238 7.27365 8.80133 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.002407 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.046336 B =11628.410447 C =12499.189347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.196 3.804 3 O -0.537 6.537 4 C 0.436 3.564 5 O -0.517 6.517 6 O -0.346 6.346 7 C 0.075 3.925 8 C 0.054 3.946 9 O -0.407 6.407 10 C 0.208 3.792 11 C -0.548 4.548 12 H 0.061 0.939 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.982 3.018 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.264 1.264 19 C -0.115 4.115 20 C -0.082 4.082 21 C -0.112 4.112 22 C -0.038 4.038 23 Cl -0.067 7.067 24 C -0.113 4.113 25 C -0.103 4.103 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.393 0.607 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.056 0.944 34 H -0.008 1.008 35 H -0.011 1.011 36 H 0.271 0.729 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.503 -13.401 21.696 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.153 3.847 3 O -0.345 6.345 4 C 0.278 3.722 5 O -0.406 6.406 6 O -0.261 6.261 7 C 0.001 3.999 8 C -0.023 4.023 9 O -0.327 6.327 10 C 0.133 3.867 11 C -0.586 4.586 12 H 0.080 0.920 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.805 3.195 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.188 1.188 19 C -0.115 4.115 20 C -0.100 4.100 21 C -0.130 4.130 22 C -0.064 4.064 23 Cl -0.038 7.038 24 C -0.132 4.132 25 C -0.121 4.121 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.244 0.756 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.009 0.991 35 H 0.006 0.994 36 H 0.080 0.920 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.889 -13.579 21.795 27.174 hybrid contribution 1.251 0.236 -0.562 1.392 sum -7.638 -13.343 21.233 26.215 Atomic orbital electron populations 1.21996 0.87325 1.04931 1.05740 1.19881 0.98202 0.81673 0.84959 1.86674 1.28754 1.22860 1.96238 1.25104 0.74618 0.86504 0.85947 1.90655 1.46306 1.17930 1.85708 1.86677 1.76001 1.44339 1.19110 1.23248 1.00548 0.93631 0.82425 1.22635 0.93108 0.90591 0.95986 1.87852 1.59170 1.42136 1.43570 1.19865 0.95134 0.86941 0.84726 1.21371 1.21876 1.12068 1.03259 0.92046 1.25950 0.99104 0.99781 0.94389 1.70059 1.43430 1.34902 1.08491 0.85195 0.78176 0.77301 0.78836 1.19320 1.19954 1.18807 1.20109 0.96495 0.98557 0.96354 1.21250 1.00528 0.93570 0.94649 1.21306 0.94785 1.00802 0.96120 1.21190 0.96543 0.97109 0.91578 1.98378 1.88648 1.78180 1.38575 1.21192 1.00787 0.95160 0.96041 1.21108 0.95141 0.99986 0.95877 0.88053 0.88200 0.90575 0.75622 0.90993 0.87226 0.90026 0.92621 0.99065 0.99360 0.92025 0.82599 0.82537 0.83192 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.12 71.98 0.58 -1.77 16 2 C 0.20 4.27 1.22 -12.29 -0.01 4.25 16 3 O -0.54 -12.78 12.50 -135.71 -1.70 -14.48 16 4 C 0.44 12.09 6.79 71.24 0.48 12.57 16 5 O -0.52 -15.77 15.99 21.97 0.35 -15.41 16 6 O -0.35 -11.13 9.94 -44.94 -0.45 -11.58 16 7 C 0.07 2.26 5.84 71.98 0.42 2.68 16 8 C 0.05 1.92 6.33 71.98 0.46 2.37 16 9 O -0.41 -19.74 10.30 -145.57 -1.50 -21.24 16 10 C 0.21 11.58 5.69 71.23 0.41 11.99 16 11 C -0.55 -32.51 9.43 25.60 0.24 -32.26 16 12 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 13 C 0.01 0.36 5.46 84.65 0.46 0.83 16 14 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 15 Si 0.98 44.05 29.54 68.60 2.03 46.08 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 19 C -0.11 -2.25 4.24 -19.86 -0.08 -2.33 16 20 C -0.08 -1.35 9.11 22.27 0.20 -1.14 16 21 C -0.11 -1.73 9.83 22.29 0.22 -1.51 16 22 C -0.04 -0.65 6.32 22.33 0.14 -0.50 16 23 Cl -0.07 -1.06 28.96 -2.72 -0.08 -1.14 16 24 C -0.11 -1.96 9.83 22.29 0.22 -1.74 16 25 C -0.10 -1.92 9.32 22.26 0.21 -1.72 16 26 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.10 1.22 6.51 -2.39 -0.02 1.20 16 28 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.39 7.77 7.32 -74.06 -0.54 7.23 16 30 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16 31 H 0.11 2.62 8.13 -2.38 -0.02 2.60 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 34 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.16 1.84 6.16 -2.91 -0.02 1.82 16 38 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.14 2.25 6.49 -2.91 -0.02 2.23 16 Total: -1.00 -72.41 363.20 3.42 -69.00 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.53 Total: 12.23 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 3.94 Total: -8.29 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.28 Total: -55.16 kcal Atomic # 8 Polarization: -59.43 SS G_CDS: -3.29 Total: -62.72 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -72.41 3.42 -69.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815502525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.070 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds