Wall clock time and date at job start Tue Mar 31 2020 16:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99979 * 2 1 4 4 N 1.46506 * 109.46554 * 125.00150 * 3 2 1 5 5 C 1.46494 * 120.00405 * 274.96615 * 4 3 2 6 6 C 1.50700 * 109.47106 * 270.00609 * 5 4 3 7 7 H 1.08000 * 120.00297 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00064 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99921 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00063 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47207 * 59.99675 * 10 8 6 12 12 H 1.48499 * 109.47054 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47059 * 299.99648 * 10 8 6 14 14 C 1.34773 * 119.99521 * 94.96989 * 4 3 2 15 15 O 1.21611 * 119.99921 * 185.53492 * 14 4 3 16 16 C 1.47386 * 120.00361 * 5.53757 * 14 4 3 17 17 C 1.39982 * 120.61234 * 55.04268 * 16 14 4 18 18 C 1.38334 * 118.37287 * 180.02562 * 17 16 14 19 19 C 1.38409 * 119.52418 * 359.97438 * 18 17 16 20 20 N 1.31818 * 121.22708 * 359.97438 * 19 18 17 21 21 C 1.32505 * 121.76810 * 0.02727 * 20 19 18 22 22 S 1.76206 * 119.83363 * 179.97438 * 21 20 19 23 23 C 1.80998 * 99.99734 * 359.97438 * 22 21 20 24 24 F 1.39898 * 109.47725 * 300.00098 * 23 22 21 25 25 F 1.39905 * 109.47344 * 60.00236 * 23 22 21 26 26 H 1.07999 * 119.99974 * 179.97438 * 1 2 3 27 27 H 1.07992 * 120.00008 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99954 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46891 * 5.00681 * 3 2 1 30 30 H 1.08992 * 109.47658 * 245.00289 * 3 2 1 31 31 H 1.08999 * 109.47233 * 29.99998 * 5 4 3 32 32 H 1.08990 * 109.47432 * 150.00561 * 5 4 3 33 33 H 0.96995 * 120.00058 * 180.02562 * 9 8 6 34 34 H 1.07998 * 120.81361 * 359.97438 * 17 16 14 35 35 H 1.07998 * 120.23723 * 179.97438 * 18 17 16 36 36 H 1.07992 * 119.38641 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.47268 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5288 1.7626 2.4522 6 6 2.7149 3.2517 2.5892 7 1 3.1377 3.8204 1.7741 8 6 2.3464 3.8882 3.7555 9 7 1.8320 3.1957 4.7482 10 14 2.5778 5.7340 3.9255 11 1 1.7939 6.4302 2.8738 12 1 2.1063 6.1707 5.2643 13 1 4.0166 6.0686 3.7735 14 6 4.2775 0.9600 0.9572 15 8 5.0241 0.8853 1.9143 16 6 4.7764 0.6440 -0.3931 17 6 4.6501 1.5707 -1.4347 18 6 5.1341 1.2257 -2.6838 19 6 5.7243 -0.0126 -2.8685 20 7 5.8352 -0.8718 -1.8749 21 6 5.3891 -0.5933 -0.6587 22 16 5.5633 -1.7801 0.6320 23 6 6.3866 -3.1124 -0.2753 24 9 5.5685 -3.5342 -1.3288 25 9 7.6024 -2.6463 -0.7869 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9352 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6213 1.4027 -0.9313 31 1 1.4727 1.5167 2.5636 32 1 3.1041 1.2520 3.2243 33 1 1.5724 3.6435 5.5685 34 1 4.1854 2.5311 -1.2673 35 1 5.0519 1.9175 -3.5090 36 1 6.1018 -0.2794 -3.8444 37 1 6.5730 -3.9493 0.3979 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816803252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:29 Heat of formation + Delta-G solvation = -55.808766 kcal Electronic energy + Delta-G solvation = -25750.531321 eV Core-core repulsion = 21677.541225 eV Total energy + Delta-G solvation = -4072.990096 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.06395 -47.15521 -40.49218 -38.62360 -35.78743 -33.28512 -32.88055 -32.04792 -31.47292 -27.71886 -27.05847 -25.75932 -24.51999 -23.93761 -22.56060 -20.03392 -19.39746 -18.63177 -17.76199 -17.39731 -17.18269 -16.77943 -16.68645 -16.34503 -15.74827 -14.96630 -14.63826 -14.49677 -14.26873 -14.16498 -13.83948 -13.60274 -13.46824 -13.21926 -13.01527 -12.87992 -12.51986 -12.19188 -11.81883 -11.70813 -11.35766 -11.12124 -10.94386 -10.64733 -10.52628 -10.31706 -10.25349 -9.94234 -9.81914 -9.71031 -9.18920 -9.05033 -8.47828 -7.96865 -7.80711 -6.09174 -4.14926 0.67085 0.83591 0.99974 1.47672 2.43735 3.12083 3.28238 3.33463 3.36013 3.55673 3.70851 3.79400 4.24900 4.38930 4.42637 4.48930 4.70231 4.77979 4.91222 5.06315 5.19680 5.25105 5.35064 5.42032 5.55799 5.79850 5.92596 5.98213 6.15222 6.33124 6.80212 6.87783 7.00877 7.37006 7.43116 7.51867 7.85794 8.15597 8.22547 8.74143 8.91935 9.50087 10.98858 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.003933 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.011219 B = 7116.842811 C = 7252.787353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.166 4.166 3 C 0.127 3.873 4 N -0.579 5.579 5 C 0.247 3.753 6 C -0.532 4.532 7 H 0.057 0.943 8 C 0.064 3.936 9 N -0.891 5.891 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.547 3.453 15 O -0.514 6.514 16 C -0.135 4.135 17 C -0.034 4.034 18 C -0.174 4.174 19 C 0.126 3.874 20 N -0.478 5.478 21 C 0.140 3.860 22 S -0.009 6.009 23 C 0.267 3.733 24 F -0.180 7.180 25 F -0.177 7.177 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.265 0.735 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 -9.766 -15.621 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.186 4.186 3 C 0.004 3.996 4 N -0.309 5.309 5 C 0.129 3.871 6 C -0.570 4.570 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.332 3.668 15 O -0.390 6.390 16 C -0.147 4.147 17 C -0.062 4.062 18 C -0.196 4.196 19 C -0.035 4.035 20 N -0.189 5.189 21 C -0.109 4.109 22 S 0.227 5.773 23 C 0.104 3.896 24 F -0.161 7.161 25 F -0.159 7.159 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.126 -10.690 -13.827 17.958 hybrid contribution 0.015 1.876 -1.180 2.217 sum 4.141 -8.814 -15.008 17.890 Atomic orbital electron populations 1.23805 0.95719 1.01794 1.00450 1.23354 0.96378 0.98873 0.99965 1.20812 0.93146 0.95773 0.89900 1.48172 1.07447 1.62836 1.12480 1.19354 0.95475 0.95001 0.77300 1.21355 1.42384 0.92508 1.00785 0.92502 1.24917 0.94937 0.98574 0.95434 1.69920 1.41994 1.35963 1.05110 0.86564 0.78660 0.84982 0.77252 1.20226 1.21109 1.20151 1.17813 0.83255 0.78850 0.86912 1.90826 1.55720 1.51900 1.40583 1.20838 1.02428 0.94705 0.96743 1.21736 0.94354 0.98814 0.91259 1.22069 1.00929 0.98559 0.98090 1.22800 0.93855 0.89549 0.97334 1.68068 1.18082 1.34160 0.98624 1.22759 0.97465 0.95218 0.95427 1.87472 1.72741 1.07455 1.09640 1.24119 0.78854 0.98508 0.88143 1.93101 1.72043 1.90652 1.60314 1.93107 1.44218 1.89701 1.88849 0.88682 0.88252 0.87815 0.89263 0.90435 0.94565 0.93493 0.92560 0.83256 0.83798 0.81995 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 14.32 29.01 0.42 -1.98 16 2 C -0.17 -2.50 9.84 -36.03 -0.35 -2.85 16 3 C 0.13 2.08 5.69 -5.19 -0.03 2.05 16 4 N -0.58 -12.09 2.44 -177.73 -0.43 -12.53 16 5 C 0.25 6.32 5.22 -5.20 -0.03 6.30 16 6 C -0.53 -14.59 9.39 -34.44 -0.32 -14.92 16 7 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 10 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.55 11.55 6.50 -12.54 -0.08 11.47 16 15 O -0.51 -12.85 15.66 5.27 0.08 -12.77 16 16 C -0.14 -2.31 4.92 -104.63 -0.51 -2.82 16 17 C -0.03 -0.46 7.62 -38.89 -0.30 -0.76 16 18 C -0.17 -1.81 10.09 -39.48 -0.40 -2.21 16 19 C 0.13 1.43 11.16 -17.49 -0.20 1.23 16 20 N -0.48 -7.00 7.80 -11.68 -0.09 -7.09 16 21 C 0.14 2.30 6.90 -16.37 -0.11 2.18 16 22 S -0.01 -0.15 20.63 -107.50 -2.22 -2.36 16 23 C 0.27 3.22 5.42 101.05 0.55 3.77 16 24 F -0.18 -2.37 16.44 2.25 0.04 -2.33 16 25 F -0.18 -2.43 16.44 2.25 0.04 -2.40 16 26 H 0.09 1.11 8.06 -52.49 -0.42 0.68 16 27 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 28 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 29 H 0.09 1.46 7.76 -51.93 -0.40 1.06 16 30 H 0.08 1.08 4.43 -51.93 -0.23 0.85 16 31 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 32 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.15 1.84 7.61 -52.49 -0.40 1.44 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.14 1.10 8.14 -51.91 -0.42 0.68 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -33.76 345.66 -7.03 -40.79 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -3.90 Total: -0.73 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.47 Total: 3.15 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.21 Total: -44.87 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.22 Total: -2.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.76 -7.03 -40.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.014 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds