Wall clock time and date at job start Tue Mar 31 2020 16:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99979 * 2 1 4 4 N 1.46506 * 109.46554 * 125.00150 * 3 2 1 5 5 C 1.46494 * 120.00405 * 274.96615 * 4 3 2 6 6 C 1.50700 * 109.47106 * 270.00609 * 5 4 3 7 7 H 1.08000 * 120.00297 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00064 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99921 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00063 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47207 * 59.99675 * 10 8 6 12 12 H 1.48499 * 109.47054 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47059 * 299.99648 * 10 8 6 14 14 C 1.34773 * 119.99521 * 94.96989 * 4 3 2 15 15 O 1.21611 * 119.99921 * 185.53492 * 14 4 3 16 16 C 1.47386 * 120.00361 * 5.53757 * 14 4 3 17 17 C 1.39982 * 120.61234 * 55.04268 * 16 14 4 18 18 C 1.38334 * 118.37287 * 180.02562 * 17 16 14 19 19 C 1.38409 * 119.52418 * 359.97438 * 18 17 16 20 20 N 1.31818 * 121.22708 * 359.97438 * 19 18 17 21 21 C 1.32505 * 121.76810 * 0.02727 * 20 19 18 22 22 S 1.76206 * 119.83363 * 179.97438 * 21 20 19 23 23 C 1.80998 * 99.99734 * 359.97438 * 22 21 20 24 24 F 1.39898 * 109.47725 * 300.00098 * 23 22 21 25 25 F 1.39905 * 109.47344 * 60.00236 * 23 22 21 26 26 H 1.07999 * 119.99974 * 179.97438 * 1 2 3 27 27 H 1.07992 * 120.00008 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99954 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46891 * 5.00681 * 3 2 1 30 30 H 1.08992 * 109.47658 * 245.00289 * 3 2 1 31 31 H 1.08999 * 109.47233 * 29.99998 * 5 4 3 32 32 H 1.08990 * 109.47432 * 150.00561 * 5 4 3 33 33 H 0.96995 * 120.00058 * 180.02562 * 9 8 6 34 34 H 1.07998 * 120.81361 * 359.97438 * 17 16 14 35 35 H 1.07998 * 120.23723 * 179.97438 * 18 17 16 36 36 H 1.07992 * 119.38641 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.47268 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5288 1.7626 2.4522 6 6 2.7149 3.2517 2.5892 7 1 3.1377 3.8204 1.7741 8 6 2.3464 3.8882 3.7555 9 7 1.8320 3.1957 4.7482 10 14 2.5778 5.7340 3.9255 11 1 1.7939 6.4302 2.8738 12 1 2.1063 6.1707 5.2643 13 1 4.0166 6.0686 3.7735 14 6 4.2775 0.9600 0.9572 15 8 5.0241 0.8853 1.9143 16 6 4.7764 0.6440 -0.3931 17 6 4.6501 1.5707 -1.4347 18 6 5.1341 1.2257 -2.6838 19 6 5.7243 -0.0126 -2.8685 20 7 5.8352 -0.8718 -1.8749 21 6 5.3891 -0.5933 -0.6587 22 16 5.5633 -1.7801 0.6320 23 6 6.3866 -3.1124 -0.2753 24 9 5.5685 -3.5342 -1.3288 25 9 7.6024 -2.6463 -0.7869 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9352 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6213 1.4027 -0.9313 31 1 1.4727 1.5167 2.5636 32 1 3.1041 1.2520 3.2243 33 1 1.5724 3.6435 5.5685 34 1 4.1854 2.5311 -1.2673 35 1 5.0519 1.9175 -3.5090 36 1 6.1018 -0.2794 -3.8444 37 1 6.5730 -3.9493 0.3979 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816803252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:28 Heat of formation + Delta-G solvation = -76.745713 kcal Electronic energy + Delta-G solvation = -25751.439215 eV Core-core repulsion = 21677.541225 eV Total energy + Delta-G solvation = -4073.897990 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.08733 -48.18277 -41.72825 -40.05671 -37.34962 -35.16918 -34.02921 -33.58936 -32.61335 -29.60306 -28.04246 -27.12943 -26.06248 -24.97431 -24.22410 -21.36494 -20.69581 -19.78051 -18.80116 -18.64550 -18.41892 -18.31951 -18.06083 -17.72320 -17.25928 -16.41007 -15.98755 -15.83245 -15.70713 -15.37090 -14.91772 -14.74914 -14.53209 -14.50348 -14.31542 -14.18338 -14.15500 -13.63677 -13.37197 -13.04526 -12.91706 -12.83247 -12.59072 -12.30693 -12.22566 -11.73048 -11.57137 -11.31487 -11.18401 -10.93401 -10.63700 -10.59287 -10.31262 -9.56089 -9.12341 -8.22306 -6.37513 -0.41703 -0.19298 -0.02963 0.38925 1.24345 1.38104 1.42348 1.49360 1.66529 2.21482 2.40536 2.53734 2.82548 3.08004 3.27720 3.44468 3.45191 3.60387 3.74420 3.88029 4.00795 4.15179 4.16898 4.32773 4.39835 4.74153 4.81861 4.95952 5.00333 5.00460 5.20714 5.43205 5.46908 5.66321 5.72033 5.88079 6.03264 6.49303 6.56932 6.70631 7.15638 7.35180 8.85207 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.003933 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.011219 B = 7116.842811 C = 7252.787353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.189 4.189 3 C 0.127 3.873 4 N -0.583 5.583 5 C 0.266 3.734 6 C -0.545 4.545 7 H 0.059 0.941 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.968 3.032 11 H -0.257 1.257 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.547 3.453 15 O -0.569 6.569 16 C -0.161 4.161 17 C -0.040 4.040 18 C -0.146 4.146 19 C 0.130 3.870 20 N -0.492 5.492 21 C 0.131 3.869 22 S -0.078 6.078 23 C 0.283 3.717 24 F -0.183 7.183 25 F -0.185 7.185 26 H 0.116 0.884 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.025 0.975 32 H -0.001 1.001 33 H 0.267 0.733 34 H 0.159 0.841 35 H 0.195 0.805 36 H 0.206 0.794 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 -8.949 -19.065 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.208 4.208 3 C 0.006 3.994 4 N -0.312 5.312 5 C 0.145 3.855 6 C -0.583 4.583 7 H 0.077 0.923 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.792 3.208 11 H -0.182 1.182 12 H -0.206 1.206 13 H -0.203 1.203 14 C 0.333 3.667 15 O -0.450 6.450 16 C -0.173 4.173 17 C -0.067 4.067 18 C -0.168 4.168 19 C -0.031 4.031 20 N -0.204 5.204 21 C -0.117 4.117 22 S 0.159 5.841 23 C 0.120 3.880 24 F -0.165 7.165 25 F -0.166 7.166 26 H 0.134 0.866 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.043 0.957 32 H 0.017 0.983 33 H 0.076 0.924 34 H 0.177 0.823 35 H 0.212 0.788 36 H 0.222 0.778 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 4.083 -9.882 -17.323 20.357 hybrid contribution 0.020 1.557 -0.249 1.577 sum 4.102 -8.325 -17.572 19.873 Atomic orbital electron populations 1.24051 0.95118 1.03142 0.97500 1.23227 0.96978 0.97972 1.02644 1.21018 0.92704 0.96505 0.89197 1.48102 1.08494 1.62611 1.11992 1.18764 0.93778 0.94019 0.78950 1.21642 1.42263 0.93313 1.01104 0.92323 1.25847 0.94425 1.03625 0.94974 1.70054 1.42869 1.38029 1.05666 0.85469 0.78501 0.79005 0.77853 1.18175 1.20563 1.20320 1.18419 0.82580 0.77370 0.88288 1.90771 1.57047 1.54156 1.42984 1.20505 1.05026 0.96564 0.95240 1.21977 0.94715 0.98441 0.91611 1.22553 0.97831 0.98648 0.97758 1.23661 0.92243 0.89245 0.97969 1.68125 1.18485 1.35366 0.98462 1.22618 0.98147 0.94869 0.96025 1.87610 1.73903 1.10210 1.12423 1.24388 0.77603 0.97827 0.88132 1.93082 1.72319 1.90402 1.60692 1.93082 1.44630 1.89930 1.89004 0.86623 0.87536 0.88439 0.89422 0.87824 0.95749 0.98310 0.92384 0.82332 0.78830 0.77758 0.79070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 14.32 67.78 0.97 -3.12 16 2 C -0.19 -5.67 9.84 25.65 0.25 -5.42 16 3 C 0.13 4.18 5.69 85.63 0.49 4.66 16 4 N -0.58 -25.46 2.44 -834.47 -2.04 -27.50 16 5 C 0.27 14.41 5.22 85.63 0.45 14.86 16 6 C -0.54 -30.84 9.39 25.60 0.24 -30.59 16 7 H 0.06 3.22 7.81 -2.91 -0.02 3.19 16 8 C 0.01 0.61 5.46 84.66 0.46 1.07 16 9 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 10 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 C 0.55 24.27 6.50 86.65 0.56 24.83 16 15 O -0.57 -30.68 15.66 -4.07 -0.06 -30.74 16 16 C -0.16 -5.54 4.92 -19.87 -0.10 -5.64 16 17 C -0.04 -1.00 7.62 22.72 0.17 -0.82 16 18 C -0.15 -2.38 10.09 22.33 0.23 -2.15 16 19 C 0.13 2.42 11.16 84.74 0.95 3.36 16 20 N -0.49 -13.50 7.80 -190.87 -1.49 -14.99 16 21 C 0.13 4.31 6.90 85.17 0.59 4.90 16 22 S -0.08 -2.53 20.63 -56.49 -1.17 -3.69 16 23 C 0.28 6.61 5.42 113.37 0.61 7.22 16 24 F -0.18 -4.62 16.44 44.97 0.74 -3.88 16 25 F -0.18 -4.89 16.44 44.97 0.74 -4.15 16 26 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 27 H 0.11 2.57 7.84 -2.91 -0.02 2.54 16 28 H 0.10 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.09 2.86 7.76 -2.39 -0.02 2.84 16 30 H 0.10 2.79 4.43 -2.39 -0.01 2.78 16 31 H 0.02 1.35 8.07 -2.39 -0.02 1.34 16 32 H 0.00 -0.08 7.35 -2.39 -0.02 -0.09 16 33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.16 3.56 7.61 -2.91 -0.02 3.54 16 35 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.21 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.19 2.61 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -79.24 345.66 6.01 -73.23 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.10 Total: 7.94 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 5.87 Total: 13.16 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -3.24 Total: -97.92 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.06 Total: -30.74 kcal Atomic # 9 Polarization: -9.51 SS G_CDS: 1.48 Total: -8.03 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -1.17 Total: -3.69 kcal Total: -79.24 6.01 -73.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.517 kcal (2) G-P(sol) polarization free energy of solvation -79.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds