Wall clock time and date at job start Tue Mar 31 2020 15:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99860 * 2 1 4 4 H 1.48506 * 109.46942 * 270.00509 * 3 2 1 5 5 H 1.48497 * 109.47141 * 30.00419 * 3 2 1 6 6 H 1.48492 * 109.47005 * 150.00377 * 3 2 1 7 7 C 1.37879 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99371 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00234 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47477 * 184.72188 * 9 7 2 11 11 C 1.46904 * 110.99802 * 298.77286 * 10 9 7 12 12 C 1.53005 * 109.47043 * 287.82039 * 11 10 9 13 13 C 1.52997 * 109.47231 * 179.27761 * 12 11 10 14 14 H 1.09006 * 115.55080 * 29.33147 * 13 12 11 15 15 C 1.52993 * 117.49842 * 243.62248 * 13 12 11 16 16 C 1.53000 * 60.00144 * 252.50922 * 15 13 12 17 17 Cl 1.80299 * 117.50198 * 252.51022 * 16 15 13 18 18 Cl 1.80302 * 117.49713 * 107.48857 * 16 15 13 19 19 C 1.46900 * 111.00086 * 62.72042 * 10 9 7 20 20 C 1.50699 * 109.46714 * 66.05000 * 19 10 9 21 21 C 1.38221 * 119.62094 * 95.00526 * 20 19 10 22 22 C 1.38632 * 119.16413 * 180.27769 * 21 20 19 23 23 C 1.38676 * 118.41738 * 359.47464 * 22 21 20 24 24 C 1.38183 * 119.16187 * 0.52363 * 23 22 21 25 25 N 1.31864 * 119.61698 * 275.01895 * 20 19 10 26 26 H 0.97004 * 120.00005 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46826 * 64.71916 * 9 7 2 28 28 H 1.09004 * 109.47327 * 304.72649 * 9 7 2 29 29 H 1.08995 * 109.47201 * 47.81807 * 11 10 9 30 30 H 1.09001 * 109.46960 * 167.82228 * 11 10 9 31 31 H 1.09000 * 109.46941 * 299.27656 * 12 11 10 32 32 H 1.08996 * 109.46873 * 59.27435 * 12 11 10 33 33 H 1.09006 * 117.50384 * 359.97438 * 15 13 12 34 34 H 1.09002 * 117.49833 * 145.02081 * 15 13 12 35 35 H 1.09001 * 109.47069 * 306.05090 * 19 10 9 36 36 H 1.08995 * 109.47063 * 186.04953 * 19 10 9 37 37 H 1.08000 * 120.41645 * 359.97438 * 21 20 19 38 38 H 1.07998 * 120.78865 * 179.72083 * 22 21 20 39 39 H 1.07997 * 120.41718 * 180.22397 * 23 22 21 40 40 H 1.08002 * 119.61600 * 179.72366 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2016 -3.6134 0.1129 11 6 3.1286 -3.6325 -1.0266 12 6 2.3844 -4.0927 -2.2818 13 6 3.3454 -4.0954 -3.4723 14 1 4.3923 -4.2800 -3.2310 15 6 3.0443 -3.1361 -4.6254 16 6 2.8206 -4.6392 -4.8026 17 17 3.9812 -5.5357 -5.8515 18 17 1.1170 -5.2277 -4.8474 19 6 2.9330 -3.5540 1.3855 20 6 1.9752 -3.7824 2.5263 21 6 1.8254 -5.0533 3.0486 22 6 0.9375 -5.2537 4.0942 23 6 0.2383 -4.1612 4.5848 24 6 0.4404 -2.9200 4.0121 25 7 1.2895 -2.7674 3.0146 26 1 -0.4850 0.8401 0.0004 27 1 0.6890 -2.5941 -0.9296 28 1 0.5627 -2.5213 0.8444 29 1 3.5275 -2.6310 -1.1874 30 1 3.9476 -4.3206 -0.8171 31 1 1.9965 -5.0993 -2.1257 32 1 1.5575 -3.4120 -2.4839 33 1 2.1613 -2.5032 -4.5362 34 1 3.8932 -2.6891 -5.1430 35 1 3.3979 -2.5739 1.4919 36 1 3.7034 -4.3249 1.3980 37 1 2.3894 -5.8807 2.6439 38 1 0.7965 -6.2365 4.5191 39 1 -0.4589 -4.2798 5.4010 40 1 -0.1036 -2.0649 4.3855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822669235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:25 Heat of formation + Delta-G solvation = 53.472669 kcal Electronic energy + Delta-G solvation = -23186.609149 eV Core-core repulsion = 19668.110825 eV Total energy + Delta-G solvation = -3518.498324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.71252 -38.29143 -36.73881 -35.97075 -35.38062 -32.43840 -32.05999 -31.55422 -29.45583 -27.09434 -25.05601 -23.42709 -22.93940 -22.27589 -21.64421 -20.36813 -19.63389 -16.74932 -16.23539 -16.05487 -15.70492 -15.38156 -15.10117 -14.79736 -14.33442 -14.07686 -13.34013 -13.20269 -13.05192 -12.84505 -12.62026 -12.35348 -12.23846 -11.77001 -11.71355 -11.41282 -11.16849 -11.11318 -10.93796 -10.87180 -10.82573 -10.70921 -10.52733 -10.26288 -9.94888 -9.81448 -9.64685 -9.52430 -9.33615 -8.69381 -8.53581 -8.28160 -7.18413 -5.91176 -3.96295 1.20941 1.58420 1.77300 2.25855 3.29280 3.31817 3.39613 3.41932 4.18025 4.29362 4.46215 4.49423 4.84727 5.03790 5.15417 5.25922 5.30188 5.41640 5.42720 5.49497 5.58616 5.66896 5.75229 5.91921 5.98214 6.03139 6.14238 6.16772 6.27628 6.44698 6.56429 6.67898 6.72633 6.81637 7.16860 7.31013 7.66070 7.99514 8.06507 8.29918 8.37891 8.68535 9.09439 9.67751 11.15346 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010236 B = 0.003889 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.886661 B = 7197.181982 C = 8989.070808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.184 3.816 10 N -0.538 5.538 11 C 0.064 3.936 12 C -0.085 4.085 13 C -0.100 4.100 14 H 0.124 0.876 15 C -0.141 4.141 16 C -0.003 4.003 17 Cl -0.112 7.112 18 Cl -0.093 7.093 19 C 0.106 3.894 20 C 0.156 3.844 21 C -0.166 4.166 22 C -0.086 4.086 23 C -0.190 4.190 24 C 0.099 3.901 25 N -0.442 5.442 26 H 0.258 0.742 27 H 0.023 0.977 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 -10.907 -1.963 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.131 4.131 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.059 3.941 10 N -0.262 5.262 11 C -0.065 4.065 12 C -0.123 4.123 13 C -0.120 4.120 14 H 0.142 0.858 15 C -0.179 4.179 16 C -0.054 4.054 17 Cl -0.085 7.085 18 Cl -0.066 7.066 19 C -0.023 4.023 20 C 0.017 3.983 21 C -0.186 4.186 22 C -0.112 4.112 23 C -0.210 4.210 24 C -0.058 4.058 25 N -0.151 5.151 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.142 0.858 34 H 0.134 0.866 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.015 -10.519 -2.426 11.903 hybrid contribution 0.575 0.789 0.227 1.002 sum 5.589 -9.729 -2.200 11.434 Atomic orbital electron populations 1.69940 1.05901 1.26308 1.50625 1.24820 0.94568 0.98585 0.95127 0.86775 0.80041 0.84409 0.77754 1.21006 1.21374 1.20149 1.21496 0.92714 0.91923 1.50861 0.92973 1.19860 0.91183 0.85096 0.97949 1.62550 1.16837 1.47542 0.99223 1.21868 0.94060 1.00107 0.90439 1.21235 0.97022 1.02912 0.91106 1.23333 1.01829 0.97770 0.89022 0.85770 1.24088 1.05230 0.88671 0.99889 1.26966 0.82049 0.95852 1.00557 1.98726 1.60592 1.78763 1.70388 1.98747 1.19181 1.90227 1.98479 1.20813 0.92702 1.01131 0.87650 1.21246 0.94159 0.88375 0.94471 1.21911 1.00528 0.98235 0.97965 1.21429 0.95265 0.98690 0.95820 1.22043 1.02052 0.94514 1.02377 1.22803 0.94815 0.96373 0.91852 1.67793 1.04797 1.34098 1.08417 0.93176 0.95854 0.93401 0.92890 0.93055 0.90647 0.89983 0.85805 0.86608 0.91816 0.91612 0.85443 0.85735 0.85728 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 3 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.53 -13.93 7.33 -34.44 -0.25 -14.18 16 8 H 0.05 1.36 5.95 -52.49 -0.31 1.05 16 9 C 0.18 4.54 4.71 -4.98 -0.02 4.52 16 10 N -0.54 -10.73 4.66 -237.52 -1.11 -11.83 16 11 C 0.06 1.09 4.76 -3.82 -0.02 1.07 16 12 C -0.09 -1.32 4.65 -26.73 -0.12 -1.44 16 13 C -0.10 -1.26 5.58 -90.62 -0.51 -1.77 16 14 H 0.12 1.39 8.08 -51.93 -0.42 0.97 16 15 C -0.14 -1.69 9.86 -26.73 -0.26 -1.95 16 16 C 0.00 -0.04 3.62 -26.73 -0.10 -0.13 16 17 Cl -0.11 -1.31 29.29 -51.86 -1.52 -2.83 16 18 Cl -0.09 -1.28 28.23 -51.86 -1.46 -2.74 16 19 C 0.11 1.97 5.09 -4.98 -0.03 1.95 16 20 C 0.16 2.92 5.70 -82.58 -0.47 2.45 16 21 C -0.17 -2.55 9.72 -39.44 -0.38 -2.93 16 22 C -0.09 -1.17 10.18 -39.27 -0.40 -1.57 16 23 C -0.19 -2.67 10.11 -39.44 -0.40 -3.07 16 24 C 0.10 1.72 11.18 -17.55 -0.20 1.52 16 25 N -0.44 -9.19 8.78 -9.47 -0.08 -9.27 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.02 0.62 6.65 -51.93 -0.35 0.28 16 28 H 0.05 1.32 6.19 -51.93 -0.32 1.00 16 29 H 0.05 1.01 6.17 -51.93 -0.32 0.69 16 30 H 0.05 0.75 7.81 -51.93 -0.41 0.34 16 31 H 0.08 1.17 8.02 -51.93 -0.42 0.76 16 32 H 0.08 1.48 6.46 -51.93 -0.34 1.15 16 33 H 0.12 1.59 8.03 -51.93 -0.42 1.18 16 34 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.35 6.57 -51.93 -0.34 1.01 16 36 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 37 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.15 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -29.81 359.41 -11.58 -41.40 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.29 Total: 2.34 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -3.26 Total: -13.68 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.45 Total: -46.20 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -2.98 Total: -5.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.81 -11.58 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822669235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.870 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds