Wall clock time and date at job start Tue Mar 31 2020 15:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99860 * 2 1 4 4 H 1.48506 * 109.46942 * 270.00509 * 3 2 1 5 5 H 1.48497 * 109.47141 * 30.00419 * 3 2 1 6 6 H 1.48492 * 109.47005 * 150.00377 * 3 2 1 7 7 C 1.37879 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99371 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00234 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47477 * 184.72188 * 9 7 2 11 11 C 1.46904 * 110.99802 * 298.77286 * 10 9 7 12 12 C 1.53005 * 109.47043 * 287.82039 * 11 10 9 13 13 C 1.52997 * 109.47231 * 179.27761 * 12 11 10 14 14 H 1.09006 * 115.55080 * 29.33147 * 13 12 11 15 15 C 1.52993 * 117.49842 * 243.62248 * 13 12 11 16 16 C 1.53000 * 60.00144 * 252.50922 * 15 13 12 17 17 Cl 1.80299 * 117.50198 * 252.51022 * 16 15 13 18 18 Cl 1.80302 * 117.49713 * 107.48857 * 16 15 13 19 19 C 1.46900 * 111.00086 * 62.72042 * 10 9 7 20 20 C 1.50699 * 109.46714 * 66.05000 * 19 10 9 21 21 C 1.38221 * 119.62094 * 95.00526 * 20 19 10 22 22 C 1.38632 * 119.16413 * 180.27769 * 21 20 19 23 23 C 1.38676 * 118.41738 * 359.47464 * 22 21 20 24 24 C 1.38183 * 119.16187 * 0.52363 * 23 22 21 25 25 N 1.31864 * 119.61698 * 275.01895 * 20 19 10 26 26 H 0.97004 * 120.00005 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46826 * 64.71916 * 9 7 2 28 28 H 1.09004 * 109.47327 * 304.72649 * 9 7 2 29 29 H 1.08995 * 109.47201 * 47.81807 * 11 10 9 30 30 H 1.09001 * 109.46960 * 167.82228 * 11 10 9 31 31 H 1.09000 * 109.46941 * 299.27656 * 12 11 10 32 32 H 1.08996 * 109.46873 * 59.27435 * 12 11 10 33 33 H 1.09006 * 117.50384 * 359.97438 * 15 13 12 34 34 H 1.09002 * 117.49833 * 145.02081 * 15 13 12 35 35 H 1.09001 * 109.47069 * 306.05090 * 19 10 9 36 36 H 1.08995 * 109.47063 * 186.04953 * 19 10 9 37 37 H 1.08000 * 120.41645 * 359.97438 * 21 20 19 38 38 H 1.07998 * 120.78865 * 179.72083 * 22 21 20 39 39 H 1.07997 * 120.41718 * 180.22397 * 23 22 21 40 40 H 1.08002 * 119.61600 * 179.72366 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2016 -3.6134 0.1129 11 6 3.1286 -3.6325 -1.0266 12 6 2.3844 -4.0927 -2.2818 13 6 3.3454 -4.0954 -3.4723 14 1 4.3923 -4.2800 -3.2310 15 6 3.0443 -3.1361 -4.6254 16 6 2.8206 -4.6392 -4.8026 17 17 3.9812 -5.5357 -5.8515 18 17 1.1170 -5.2277 -4.8474 19 6 2.9330 -3.5540 1.3855 20 6 1.9752 -3.7824 2.5263 21 6 1.8254 -5.0533 3.0486 22 6 0.9375 -5.2537 4.0942 23 6 0.2383 -4.1612 4.5848 24 6 0.4404 -2.9200 4.0121 25 7 1.2895 -2.7674 3.0146 26 1 -0.4850 0.8401 0.0004 27 1 0.6890 -2.5941 -0.9296 28 1 0.5627 -2.5213 0.8444 29 1 3.5275 -2.6310 -1.1874 30 1 3.9476 -4.3206 -0.8171 31 1 1.9965 -5.0993 -2.1257 32 1 1.5575 -3.4120 -2.4839 33 1 2.1613 -2.5032 -4.5362 34 1 3.8932 -2.6891 -5.1430 35 1 3.3979 -2.5739 1.4919 36 1 3.7034 -4.3249 1.3980 37 1 2.3894 -5.8807 2.6439 38 1 0.7965 -6.2365 4.5191 39 1 -0.4589 -4.2798 5.4010 40 1 -0.1036 -2.0649 4.3855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822669235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:24 Heat of formation + Delta-G solvation = 36.976626 kcal Electronic energy + Delta-G solvation = -23187.324471 eV Core-core repulsion = 19668.110825 eV Total energy + Delta-G solvation = -3519.213646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.99032 -39.42772 -38.17513 -36.97952 -36.46960 -34.47980 -33.28941 -32.84075 -30.86079 -28.90955 -26.57424 -25.13883 -24.18596 -23.34161 -22.85324 -21.52351 -21.25673 -18.51930 -17.51085 -17.25904 -17.01761 -16.77738 -16.66011 -16.15114 -15.86492 -15.49982 -14.75133 -14.65414 -14.25135 -14.10923 -14.02938 -13.71164 -13.44998 -13.13696 -12.95782 -12.80123 -12.72089 -12.65799 -12.35101 -12.29938 -12.13676 -12.01603 -11.90360 -11.88164 -11.76573 -11.48317 -11.02618 -10.66062 -10.61556 -10.42725 -9.98393 -9.78168 -8.90692 -8.00888 -6.13840 0.20239 0.35536 0.60509 1.24792 1.37319 1.39789 1.47882 2.27784 2.45233 2.94179 3.21282 3.27336 3.42017 3.57098 3.77045 3.99918 4.14313 4.16389 4.26201 4.37243 4.43506 4.50705 4.62238 4.67107 4.72244 4.85595 4.89775 4.94547 4.97626 5.10298 5.30451 5.37682 5.41634 5.43083 5.44344 5.57766 5.92005 6.01049 6.19036 6.34720 6.63111 7.03054 7.41726 7.53704 9.02879 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010236 B = 0.003889 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.886661 B = 7197.181982 C = 8989.070808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.018 3.982 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.206 3.794 10 N -0.535 5.535 11 C 0.064 3.936 12 C -0.074 4.074 13 C -0.099 4.099 14 H 0.148 0.852 15 C -0.138 4.138 16 C 0.000 4.000 17 Cl -0.099 7.099 18 Cl -0.109 7.109 19 C 0.108 3.892 20 C 0.122 3.878 21 C -0.162 4.162 22 C -0.080 4.080 23 C -0.176 4.176 24 C 0.069 3.931 25 N -0.499 5.499 26 H 0.257 0.743 27 H -0.005 1.005 28 H 0.016 0.984 29 H 0.032 0.968 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.139 0.861 35 H 0.030 0.970 36 H 0.104 0.896 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.082 -12.822 -1.559 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.070 0.930 9 C 0.080 3.920 10 N -0.259 5.259 11 C -0.064 4.064 12 C -0.111 4.111 13 C -0.118 4.118 14 H 0.165 0.835 15 C -0.176 4.176 16 C -0.052 4.052 17 Cl -0.072 7.072 18 Cl -0.082 7.082 19 C -0.020 4.020 20 C -0.016 4.016 21 C -0.182 4.182 22 C -0.106 4.106 23 C -0.195 4.195 24 C -0.088 4.088 25 N -0.209 5.209 26 H 0.066 0.934 27 H 0.013 0.987 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.128 0.872 34 H 0.157 0.843 35 H 0.048 0.952 36 H 0.122 0.878 37 H 0.173 0.827 38 H 0.186 0.814 39 H 0.179 0.821 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.749 -12.445 -2.029 14.302 hybrid contribution 0.048 1.287 0.155 1.298 sum 6.797 -11.158 -1.874 13.199 Atomic orbital electron populations 1.70076 1.07391 1.26849 1.52417 1.25568 0.95270 1.01920 0.95301 0.85817 0.78755 0.80517 0.78090 1.19897 1.21660 1.19697 1.21727 0.92709 0.92680 1.49039 0.92971 1.19362 0.91478 0.86257 0.94925 1.62460 1.17487 1.44901 1.01019 1.21966 0.94492 0.99924 0.90001 1.21024 0.96548 1.01769 0.91802 1.23270 1.02111 0.98455 0.88002 0.83471 1.24156 1.05534 0.88375 0.99534 1.26932 0.81475 0.96190 1.00574 1.98730 1.59917 1.78563 1.69983 1.98748 1.20558 1.90379 1.98512 1.20880 0.93391 1.00593 0.87120 1.21352 0.95193 0.89708 0.95343 1.22192 1.00685 0.97365 0.97940 1.21950 0.93628 1.00327 0.94670 1.22394 1.01688 0.93184 1.02278 1.23025 0.95234 0.98311 0.92230 1.67620 1.06643 1.36277 1.10333 0.93417 0.98739 0.96571 0.94959 0.89499 0.90666 0.93367 0.87185 0.84254 0.95174 0.87808 0.82684 0.81363 0.82100 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 2 C 0.02 1.01 5.46 84.66 0.46 1.47 16 3 Si 0.94 44.80 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.52 -28.39 7.33 25.60 0.19 -28.21 16 8 H 0.05 2.79 5.95 -2.91 -0.02 2.77 16 9 C 0.21 10.65 4.71 85.56 0.40 11.06 16 10 N -0.54 -21.60 4.66 -905.38 -4.22 -25.82 16 11 C 0.06 2.15 4.76 86.30 0.41 2.56 16 12 C -0.07 -2.27 4.65 30.59 0.14 -2.13 16 13 C -0.10 -2.36 5.58 -10.80 -0.06 -2.42 16 14 H 0.15 2.86 8.08 -2.38 -0.02 2.84 16 15 C -0.14 -3.17 9.86 30.59 0.30 -2.87 16 16 C 0.00 -0.01 3.62 30.59 0.11 0.10 16 17 Cl -0.10 -2.12 29.29 -2.72 -0.08 -2.20 16 18 Cl -0.11 -2.95 28.23 -2.72 -0.08 -3.03 16 19 C 0.11 4.04 5.09 85.56 0.44 4.48 16 20 C 0.12 4.57 5.70 42.55 0.24 4.81 16 21 C -0.16 -4.58 9.72 22.36 0.22 -4.37 16 22 C -0.08 -1.90 10.18 22.47 0.23 -1.67 16 23 C -0.18 -4.57 10.11 22.36 0.23 -4.35 16 24 C 0.07 2.43 11.18 84.67 0.95 3.38 16 25 N -0.50 -21.47 8.78 -183.89 -1.61 -23.08 16 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 27 H -0.01 -0.30 6.65 -2.39 -0.02 -0.32 16 28 H 0.02 0.95 6.19 -2.39 -0.01 0.93 16 29 H 0.03 1.22 6.17 -2.39 -0.01 1.21 16 30 H 0.09 2.31 7.81 -2.39 -0.02 2.29 16 31 H 0.07 2.31 8.02 -2.39 -0.02 2.29 16 32 H 0.05 1.82 6.46 -2.39 -0.02 1.80 16 33 H 0.11 2.87 8.03 -2.38 -0.02 2.85 16 34 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.03 1.31 6.57 -2.39 -0.02 1.29 16 36 H 0.10 2.98 7.76 -2.39 -0.02 2.96 16 37 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 40 H 0.15 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -68.59 359.41 1.63 -66.96 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.05 Total: 14.33 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 4.25 Total: -18.15 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -5.55 Total: -104.73 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 17 Polarization: -5.07 SS G_CDS: -0.16 Total: -5.23 kcal Total: -68.59 1.63 -66.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822669235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.940 kcal (2) G-P(sol) polarization free energy of solvation -68.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds