Wall clock time and date at job start Tue Mar 31 2020 15:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47279 * 267.32048 * 3 2 1 5 5 H 1.48495 * 109.47277 * 27.32722 * 3 2 1 6 6 H 1.48507 * 109.46941 * 147.32817 * 3 2 1 7 7 C 1.37879 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99820 * 353.51399 * 7 2 1 9 9 C 1.50701 * 120.00028 * 173.51567 * 7 2 1 10 10 O 1.42901 * 110.88583 * 328.70764 * 9 7 2 11 11 C 1.55156 * 111.03491 * 92.60946 * 9 7 2 12 12 C 1.54334 * 103.02230 * 153.39549 * 11 9 7 13 13 N 1.47028 * 107.26236 * 338.14327 * 12 11 9 14 14 C 1.34770 * 125.64831 * 178.85233 * 13 12 11 15 15 O 1.21586 * 120.00207 * 179.68980 * 14 13 12 16 16 N 1.34785 * 119.99820 * 359.68472 * 14 13 12 17 17 C 1.46502 * 119.99837 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47201 * 180.02562 * 17 16 14 19 19 S 1.81402 * 109.47129 * 179.97438 * 18 17 16 20 20 C 1.81403 * 102.99537 * 180.02562 * 19 18 17 21 21 F 1.39895 * 109.47582 * 60.00334 * 20 19 18 22 22 F 1.39906 * 109.46923 * 180.02562 * 20 19 18 23 23 F 1.39896 * 109.47129 * 299.99694 * 20 19 18 24 24 C 1.47425 * 108.70316 * 358.58157 * 13 12 11 25 25 H 0.97001 * 119.99652 * 359.97438 * 1 2 3 26 26 H 0.96706 * 113.99743 * 292.31772 * 10 9 7 27 27 H 1.09006 * 110.72194 * 271.95355 * 11 9 7 28 28 H 1.08996 * 110.72222 * 35.22720 * 11 9 7 29 29 H 1.08993 * 109.99061 * 218.66765 * 12 11 9 30 30 H 1.09001 * 109.78014 * 97.49377 * 12 11 9 31 31 H 0.96993 * 120.00060 * 0.02562 * 16 14 13 32 32 H 1.09002 * 109.47095 * 60.00189 * 17 16 14 33 33 H 1.09002 * 109.47154 * 299.99963 * 17 16 14 34 34 H 1.09002 * 109.46992 * 60.00065 * 18 17 16 35 35 H 1.08995 * 109.46956 * 300.00400 * 18 17 16 36 36 H 1.08995 * 110.36574 * 143.19990 * 24 13 12 37 37 H 1.08999 * 110.36722 * 265.40917 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5533 2.0137 -1.3985 5 1 1.4195 2.6683 0.6427 6 1 3.5173 1.4571 0.7558 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1264 0.1047 9 6 3.5043 -1.1982 -0.1479 10 8 3.9403 -0.0994 -0.9507 11 6 4.2002 -1.1846 1.2387 12 6 5.5566 -1.8634 0.9538 13 7 5.3950 -2.6655 -0.2678 14 6 6.3599 -3.3954 -0.8615 15 8 6.1107 -4.0271 -1.8700 16 7 7.6013 -3.4251 -0.3372 17 6 8.6503 -4.2181 -0.9829 18 6 9.9531 -4.0806 -0.1925 19 16 11.2518 -5.0632 -0.9916 20 6 12.6926 -4.7778 0.0730 21 9 12.4080 -5.2166 1.3705 22 9 13.7905 -5.4851 -0.4286 23 9 12.9907 -3.4112 0.0978 24 6 4.0010 -2.5442 -0.7320 25 1 -0.4850 0.8401 0.0004 26 1 3.6749 -0.1605 -1.8786 27 1 4.3439 -0.1621 1.5881 28 1 3.6279 -1.7639 1.9632 29 1 5.8326 -2.5090 1.7874 30 1 6.3238 -1.1045 0.8001 31 1 7.8001 -2.9214 0.4675 32 1 8.8028 -3.8589 -2.0007 33 1 8.3501 -5.2657 -1.0084 34 1 9.8003 -4.4401 0.8252 35 1 10.2534 -3.0332 -0.1665 36 1 3.9645 -2.5217 -1.8211 37 1 3.4008 -3.3700 -0.3500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825820884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:34 Heat of formation + Delta-G solvation = -207.732222 kcal Electronic energy + Delta-G solvation = -25521.830899 eV Core-core repulsion = 21011.483683 eV Total energy + Delta-G solvation = -4510.347216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.78204 -48.40609 -48.37155 -40.06900 -37.98929 -35.49095 -34.80301 -32.41495 -31.37970 -29.93450 -28.35968 -27.16417 -25.39504 -23.56445 -22.53340 -20.12832 -19.96532 -19.80960 -19.22906 -19.18157 -17.99081 -17.45387 -16.68611 -16.24440 -15.68473 -15.42025 -15.21145 -15.12268 -15.09825 -14.86405 -14.76587 -14.49967 -14.47965 -14.40369 -13.76878 -13.65761 -12.93975 -12.83618 -12.72330 -12.44402 -12.36912 -11.98181 -11.68516 -11.60209 -11.18674 -11.09070 -10.55240 -10.43712 -10.26232 -9.98848 -9.28209 -9.25616 -9.06202 -8.72418 -8.57345 -8.11084 -6.23033 -4.35477 -0.52993 0.98966 2.49055 2.79655 3.29110 3.29923 3.35939 3.42381 3.49033 3.65092 3.99456 4.12327 4.18894 4.45800 4.70670 4.96569 5.07802 5.25043 5.27593 5.39731 5.48815 5.69979 5.78356 6.02035 6.29298 6.40880 6.45567 6.56768 6.65909 6.98913 7.16231 7.42294 8.08254 8.12142 8.57314 8.72413 8.77607 9.38117 10.85752 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.031840 B = 0.002250 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.188645 B =12441.342686 C =12787.056771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.074 3.926 3 Si 0.952 3.048 4 H -0.293 1.293 5 H -0.327 1.327 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.220 3.780 10 O -0.559 6.559 11 C -0.120 4.120 12 C 0.100 3.900 13 N -0.626 5.626 14 C 0.722 3.278 15 O -0.594 6.594 16 N -0.748 5.748 17 C 0.160 3.840 18 C -0.116 4.116 19 S -0.137 6.137 20 C 0.464 3.536 21 F -0.168 7.168 22 F -0.149 7.149 23 F -0.168 7.168 24 C 0.108 3.892 25 H 0.267 0.733 26 H 0.372 0.628 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.397 0.603 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.140 -7.528 2.464 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.131 4.131 3 Si 0.788 3.212 4 H -0.221 1.221 5 H -0.258 1.258 6 H -0.196 1.196 7 C -0.590 4.590 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.367 6.367 11 C -0.158 4.158 12 C -0.023 4.023 13 N -0.363 5.363 14 C 0.424 3.576 15 O -0.472 6.472 16 N -0.406 5.406 17 C 0.034 3.966 18 C -0.265 4.265 19 S 0.083 5.917 20 C 0.302 3.698 21 F -0.150 7.150 22 F -0.130 7.130 23 F -0.150 7.150 24 C -0.015 4.015 25 H 0.076 0.924 26 H 0.220 0.780 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.231 0.769 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.094 -8.399 1.370 25.553 hybrid contribution 0.613 1.622 1.157 2.085 sum 24.708 -6.777 2.527 25.745 Atomic orbital electron populations 1.69968 1.06859 1.27865 1.47454 1.25121 0.94882 1.00542 0.92541 0.85631 0.77728 0.79935 0.77926 1.22060 1.25815 1.19628 1.21094 0.88345 0.95500 1.54067 0.90017 1.20249 0.93716 0.81109 0.87022 1.86107 1.80078 1.46541 1.23987 1.22957 0.92776 1.00912 0.99177 1.22083 1.00334 0.93717 0.86192 1.47710 1.11098 1.48961 1.28496 1.15353 0.79533 0.80040 0.82721 1.90915 1.81284 1.48832 1.26184 1.44938 1.09124 1.54396 1.32172 1.20596 0.82704 0.97392 0.95938 1.23877 0.95824 1.03329 1.03482 1.88311 1.02231 1.65568 1.35554 1.22715 0.88840 0.76180 0.82098 1.93330 1.93109 1.89179 1.39350 1.93269 1.54509 1.78309 1.86937 1.93332 1.94157 1.31088 1.96380 1.23031 0.78232 1.00359 0.99848 0.92361 0.78003 0.90124 0.89563 0.92650 0.92411 0.76883 0.90163 0.90160 0.87390 0.87376 0.91094 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.95 22.67 24.93 -169.99 -4.24 18.43 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.33 -8.04 7.11 56.52 0.40 -7.63 16 6 H -0.27 -6.23 5.42 56.52 0.31 -5.92 16 7 C -0.55 -14.09 8.89 -34.44 -0.31 -14.40 16 8 H 0.08 2.27 8.00 -52.49 -0.42 1.85 16 9 C 0.22 4.61 0.70 -89.63 -0.06 4.54 16 10 O -0.56 -11.67 8.52 -35.23 -0.30 -11.97 16 11 C -0.12 -2.18 5.90 -24.89 -0.15 -2.32 16 12 C 0.10 1.46 6.15 -3.06 -0.02 1.44 16 13 N -0.63 -10.58 3.33 -176.23 -0.59 -11.17 16 14 C 0.72 11.96 8.49 -86.92 -0.74 11.22 16 15 O -0.59 -12.04 16.60 5.29 0.09 -11.95 16 16 N -0.75 -8.57 5.52 -65.22 -0.36 -8.93 16 17 C 0.16 1.50 5.68 -4.04 -0.02 1.48 16 18 C -0.12 -0.74 6.02 37.16 0.22 -0.51 16 19 S -0.14 -1.00 21.77 -107.50 -2.34 -3.34 16 20 C 0.46 3.52 3.51 101.05 0.35 3.88 16 21 F -0.17 -1.32 17.34 2.25 0.04 -1.28 16 22 F -0.15 -1.22 17.36 2.25 0.04 -1.18 16 23 F -0.17 -1.33 17.34 2.25 0.04 -1.29 16 24 C 0.11 2.09 6.07 -2.53 -0.02 2.08 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.37 7.00 8.98 45.56 0.41 7.41 16 27 H 0.08 1.50 6.66 -51.93 -0.35 1.16 16 28 H 0.09 1.54 8.03 -51.93 -0.42 1.12 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.40 3.56 7.46 -40.82 -0.30 3.25 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.42 8.02 -51.93 -0.42 1.00 16 37 H 0.07 1.42 7.99 -51.93 -0.41 1.00 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -31.56 335.46 -6.29 -37.85 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -3.67 Total: 5.38 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -0.83 Total: 9.31 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.17 Total: -45.01 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.21 Total: -23.92 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.12 Total: -3.75 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.24 Total: 18.43 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.34 Total: -3.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.56 -6.29 -37.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825820884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.883 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds