Wall clock time and date at job start Tue Mar 31 2020 15:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47279 * 267.32048 * 3 2 1 5 5 H 1.48495 * 109.47277 * 27.32722 * 3 2 1 6 6 H 1.48507 * 109.46941 * 147.32817 * 3 2 1 7 7 C 1.37879 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99820 * 353.51399 * 7 2 1 9 9 C 1.50701 * 120.00028 * 173.51567 * 7 2 1 10 10 O 1.42901 * 110.88583 * 328.70764 * 9 7 2 11 11 C 1.55156 * 111.03491 * 92.60946 * 9 7 2 12 12 C 1.54334 * 103.02230 * 153.39549 * 11 9 7 13 13 N 1.47028 * 107.26236 * 338.14327 * 12 11 9 14 14 C 1.34770 * 125.64831 * 178.85233 * 13 12 11 15 15 O 1.21586 * 120.00207 * 179.68980 * 14 13 12 16 16 N 1.34785 * 119.99820 * 359.68472 * 14 13 12 17 17 C 1.46502 * 119.99837 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47201 * 180.02562 * 17 16 14 19 19 S 1.81402 * 109.47129 * 179.97438 * 18 17 16 20 20 C 1.81403 * 102.99537 * 180.02562 * 19 18 17 21 21 F 1.39895 * 109.47582 * 60.00334 * 20 19 18 22 22 F 1.39906 * 109.46923 * 180.02562 * 20 19 18 23 23 F 1.39896 * 109.47129 * 299.99694 * 20 19 18 24 24 C 1.47425 * 108.70316 * 358.58157 * 13 12 11 25 25 H 0.97001 * 119.99652 * 359.97438 * 1 2 3 26 26 H 0.96706 * 113.99743 * 292.31772 * 10 9 7 27 27 H 1.09006 * 110.72194 * 271.95355 * 11 9 7 28 28 H 1.08996 * 110.72222 * 35.22720 * 11 9 7 29 29 H 1.08993 * 109.99061 * 218.66765 * 12 11 9 30 30 H 1.09001 * 109.78014 * 97.49377 * 12 11 9 31 31 H 0.96993 * 120.00060 * 0.02562 * 16 14 13 32 32 H 1.09002 * 109.47095 * 60.00189 * 17 16 14 33 33 H 1.09002 * 109.47154 * 299.99963 * 17 16 14 34 34 H 1.09002 * 109.46992 * 60.00065 * 18 17 16 35 35 H 1.08995 * 109.46956 * 300.00400 * 18 17 16 36 36 H 1.08995 * 110.36574 * 143.19990 * 24 13 12 37 37 H 1.08999 * 110.36722 * 265.40917 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5533 2.0137 -1.3985 5 1 1.4195 2.6683 0.6427 6 1 3.5173 1.4571 0.7558 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1264 0.1047 9 6 3.5043 -1.1982 -0.1479 10 8 3.9403 -0.0994 -0.9507 11 6 4.2002 -1.1846 1.2387 12 6 5.5566 -1.8634 0.9538 13 7 5.3950 -2.6655 -0.2678 14 6 6.3599 -3.3954 -0.8615 15 8 6.1107 -4.0271 -1.8700 16 7 7.6013 -3.4251 -0.3372 17 6 8.6503 -4.2181 -0.9829 18 6 9.9531 -4.0806 -0.1925 19 16 11.2518 -5.0632 -0.9916 20 6 12.6926 -4.7778 0.0730 21 9 12.4080 -5.2166 1.3705 22 9 13.7905 -5.4851 -0.4286 23 9 12.9907 -3.4112 0.0978 24 6 4.0010 -2.5442 -0.7320 25 1 -0.4850 0.8401 0.0004 26 1 3.6749 -0.1605 -1.8786 27 1 4.3439 -0.1621 1.5881 28 1 3.6279 -1.7639 1.9632 29 1 5.8326 -2.5090 1.7874 30 1 6.3238 -1.1045 0.8001 31 1 7.8001 -2.9214 0.4675 32 1 8.8028 -3.8589 -2.0007 33 1 8.3501 -5.2657 -1.0084 34 1 9.8003 -4.4401 0.8252 35 1 10.2534 -3.0332 -0.1665 36 1 3.9645 -2.5217 -1.8211 37 1 3.4008 -3.3700 -0.3500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825820884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:33 Heat of formation + Delta-G solvation = -231.579368 kcal Electronic energy + Delta-G solvation = -25522.864989 eV Core-core repulsion = 21011.483683 eV Total energy + Delta-G solvation = -4511.381306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.086 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.37215 -49.00637 -48.95604 -41.37813 -39.45124 -36.53735 -36.31159 -34.43864 -32.52526 -31.14505 -29.87582 -27.77558 -27.07504 -24.61858 -23.72960 -21.55928 -21.25017 -20.55000 -19.81551 -19.81338 -19.54537 -18.93983 -17.59938 -17.26190 -17.03986 -16.70050 -16.45030 -16.23769 -15.81512 -15.78642 -15.65085 -15.36424 -15.25239 -15.08957 -15.07673 -14.89429 -14.52058 -14.03813 -13.83790 -13.53147 -13.43389 -13.38924 -13.12821 -13.01317 -12.72092 -12.28655 -12.19090 -11.93299 -11.73971 -11.39789 -11.21904 -10.62222 -10.40381 -10.31258 -9.61413 -9.44065 -8.32151 -6.45813 -1.11263 0.44060 1.52895 1.55201 1.64831 1.76598 1.91147 2.08499 2.47337 2.71392 2.71642 2.98466 3.04236 3.37174 3.51321 3.70088 3.85959 4.09176 4.20465 4.29757 4.44911 4.55831 4.62921 4.67941 4.85636 4.97760 5.16646 5.24252 5.32066 5.40007 5.55909 6.04838 6.07083 6.60401 6.90061 6.97413 7.32126 7.48459 8.80809 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.031840 B = 0.002250 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.188645 B =12441.342686 C =12787.056771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.023 3.977 3 Si 1.012 2.988 4 H -0.288 1.288 5 H -0.339 1.339 6 H -0.252 1.252 7 C -0.547 4.547 8 H 0.044 0.956 9 C 0.216 3.784 10 O -0.559 6.559 11 C -0.119 4.119 12 C 0.106 3.894 13 N -0.629 5.629 14 C 0.719 3.281 15 O -0.637 6.637 16 N -0.726 5.726 17 C 0.160 3.840 18 C -0.106 4.106 19 S -0.146 6.146 20 C 0.468 3.532 21 F -0.168 7.168 22 F -0.154 7.154 23 F -0.169 7.169 24 C 0.117 3.883 25 H 0.267 0.733 26 H 0.379 0.621 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.414 0.586 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.059 0.941 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.226 -6.980 3.542 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.176 4.176 3 Si 0.845 3.155 4 H -0.215 1.215 5 H -0.272 1.272 6 H -0.177 1.177 7 C -0.585 4.585 8 H 0.062 0.938 9 C 0.175 3.825 10 O -0.367 6.367 11 C -0.157 4.157 12 C -0.015 4.015 13 N -0.365 5.365 14 C 0.420 3.580 15 O -0.519 6.519 16 N -0.385 5.385 17 C 0.034 3.966 18 C -0.254 4.254 19 S 0.074 5.926 20 C 0.306 3.694 21 F -0.150 7.150 22 F -0.135 7.135 23 F -0.151 7.151 24 C -0.007 4.007 25 H 0.075 0.925 26 H 0.229 0.771 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.251 0.749 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.077 0.923 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 27.251 -7.856 2.482 28.470 hybrid contribution -0.358 1.341 0.793 1.598 sum 26.894 -6.516 3.275 27.865 Atomic orbital electron populations 1.70095 1.08636 1.28516 1.50329 1.25891 0.95316 1.03830 0.92601 0.84659 0.76828 0.75829 0.78155 1.21522 1.27231 1.17691 1.21351 0.91119 0.93760 1.52284 0.93768 1.20139 0.91242 0.82053 0.89050 1.86063 1.79643 1.46350 1.24682 1.22862 0.94548 1.01548 0.96780 1.22178 0.98604 0.94504 0.86255 1.47599 1.10044 1.49607 1.29259 1.15504 0.80625 0.79562 0.82291 1.90890 1.82249 1.50516 1.28205 1.44713 1.07592 1.53916 1.32253 1.20611 0.83411 0.96552 0.96000 1.23805 0.93700 1.04336 1.03588 1.88441 1.02596 1.65868 1.35682 1.22666 0.88686 0.76014 0.81985 1.93330 1.93088 1.89187 1.39409 1.93260 1.54812 1.78440 1.87017 1.93331 1.94182 1.31170 1.96382 1.22632 0.80088 0.98993 0.98996 0.92475 0.77145 0.90053 0.89717 0.88906 0.90039 0.74905 0.91084 0.90898 0.85480 0.85651 0.92295 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.98 13.96 21.45 0.30 -55.68 16 2 C 0.02 1.27 5.46 84.66 0.46 1.74 16 3 Si 1.01 46.30 24.93 68.60 1.71 48.01 16 4 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.34 -16.20 7.11 99.48 0.71 -15.49 16 6 H -0.25 -10.66 5.42 99.48 0.54 -10.12 16 7 C -0.55 -28.38 8.89 25.60 0.23 -28.15 16 8 H 0.04 2.57 8.00 -2.91 -0.02 2.55 16 9 C 0.22 8.82 0.70 -10.15 -0.01 8.81 16 10 O -0.56 -22.11 8.52 -148.98 -1.27 -23.38 16 11 C -0.12 -4.00 5.90 31.79 0.19 -3.81 16 12 C 0.11 2.67 6.15 86.73 0.53 3.20 16 13 N -0.63 -19.71 3.33 -829.75 -2.76 -22.47 16 14 C 0.72 22.22 8.49 179.05 1.52 23.74 16 15 O -0.64 -25.34 16.60 -3.99 -0.07 -25.41 16 16 N -0.73 -14.18 5.52 -478.52 -2.64 -16.82 16 17 C 0.16 2.58 5.68 86.38 0.49 3.08 16 18 C -0.11 -0.98 6.02 71.98 0.43 -0.54 16 19 S -0.15 -1.82 21.77 -56.49 -1.23 -3.05 16 20 C 0.47 6.10 3.51 113.37 0.40 6.50 16 21 F -0.17 -2.23 17.34 44.97 0.78 -1.45 16 22 F -0.15 -2.28 17.36 44.97 0.78 -1.50 16 23 F -0.17 -2.28 17.34 44.97 0.78 -1.50 16 24 C 0.12 4.48 6.07 86.85 0.53 5.01 16 25 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.38 13.72 8.98 -74.05 -0.67 13.05 16 27 H 0.08 2.74 6.66 -2.38 -0.02 2.72 16 28 H 0.08 2.85 8.03 -2.39 -0.02 2.83 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.41 5.40 7.46 -92.71 -0.69 4.71 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.13 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.06 2.37 8.02 -2.39 -0.02 2.35 16 37 H 0.06 2.36 7.99 -2.39 -0.02 2.34 16 Total: -1.00 -69.80 335.46 0.77 -69.03 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -0.39 Total: 14.67 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 4.77 Total: 19.56 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -5.10 Total: -94.97 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -1.33 Total: -48.79 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 2.34 Total: -4.45 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.71 Total: 48.01 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -1.23 Total: -3.05 kcal Total: -69.80 0.77 -69.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825820884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.553 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds