Wall clock time and date at job start Tue Mar 31 2020 15:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47140 * 274.99124 * 3 2 1 5 5 H 1.48506 * 109.47182 * 34.98648 * 3 2 1 6 6 H 1.48500 * 109.47323 * 154.98882 * 3 2 1 7 7 C 1.37881 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00331 * 173.96633 * 7 2 1 9 9 C 1.50705 * 119.99392 * 354.23595 * 7 2 1 10 10 O 1.42894 * 110.88944 * 299.79209 * 9 7 2 11 11 C 1.55156 * 111.00016 * 175.91314 * 9 7 2 12 12 C 1.54371 * 102.92059 * 206.45621 * 11 9 7 13 13 N 1.47021 * 107.28632 * 22.13773 * 12 11 9 14 14 C 1.34782 * 125.64903 * 181.12818 * 13 12 11 15 15 O 1.21584 * 120.00086 * 179.97438 * 14 13 12 16 16 N 1.34783 * 119.99610 * 359.95841 * 14 13 12 17 17 C 1.46495 * 119.99751 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47267 * 180.02562 * 17 16 14 19 19 S 1.81400 * 109.47492 * 179.97438 * 18 17 16 20 20 C 1.81398 * 103.00089 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.47193 * 60.00207 * 20 19 18 22 22 F 1.39906 * 109.47003 * 180.02562 * 20 19 18 23 23 F 1.39892 * 109.47064 * 300.00033 * 20 19 18 24 24 C 1.47424 * 108.70527 * 1.09378 * 13 12 11 25 25 H 0.96997 * 120.00732 * 359.97438 * 1 2 3 26 26 H 0.96708 * 113.99643 * 59.30012 * 10 9 7 27 27 H 1.09003 * 110.72309 * 324.78746 * 11 9 7 28 28 H 1.08998 * 110.71846 * 88.06318 * 11 9 7 29 29 H 1.08996 * 109.84786 * 262.73547 * 12 11 9 30 30 H 1.09004 * 109.90305 * 141.57781 * 12 11 9 31 31 H 0.96999 * 120.00285 * 0.02562 * 16 14 13 32 32 H 1.09004 * 109.47451 * 300.00363 * 17 16 14 33 33 H 1.09004 * 109.47402 * 60.00167 * 17 16 14 34 34 H 1.08995 * 109.47222 * 300.00290 * 18 17 16 35 35 H 1.09004 * 109.46728 * 60.00299 * 18 17 16 36 36 H 1.08999 * 110.36723 * 217.02770 * 24 13 12 37 37 H 1.09001 * 110.45885 * 94.75631 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4121 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1965 -0.0988 9 6 1.2568 -2.4959 0.1300 10 8 0.5317 -2.5459 1.3603 11 6 2.2200 -3.7056 0.0025 12 6 1.2979 -4.8274 -0.5212 13 7 0.1417 -4.1805 -1.1587 14 6 -0.9036 -4.8184 -1.7219 15 8 -1.8086 -4.1786 -2.2218 16 7 -0.9454 -6.1655 -1.7311 17 6 -2.0818 -6.8589 -2.3426 18 6 -1.8835 -8.3709 -2.2187 19 16 -3.2910 -9.2294 -2.9753 20 6 -2.8800 -10.9795 -2.7323 21 9 -2.7608 -11.2448 -1.3639 22 9 -3.8935 -11.7763 -3.2758 23 9 -1.6687 -11.2669 -3.3703 24 6 0.3146 -2.7186 -1.0793 25 1 -0.4851 0.8400 0.0004 26 1 -0.1179 -1.8369 1.4630 27 1 3.0135 -3.4930 -0.7140 28 1 2.6370 -3.9705 0.9741 29 1 0.9634 -5.4493 0.3090 30 1 1.8315 -5.4358 -1.2515 31 1 -0.2235 -6.6760 -1.3321 32 1 -3.0009 -6.5703 -1.8325 33 1 -2.1499 -6.5861 -3.3958 34 1 -0.9645 -8.6598 -2.7285 35 1 -1.8158 -8.6433 -1.1654 36 1 -0.6453 -2.2319 -0.9070 37 1 0.7731 -2.3390 -1.9924 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825820885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:38 Heat of formation + Delta-G solvation = -213.443711 kcal Electronic energy + Delta-G solvation = -25530.172222 eV Core-core repulsion = 21019.577337 eV Total energy + Delta-G solvation = -4510.594885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.71338 -48.33815 -48.30200 -39.75862 -37.55883 -35.24820 -34.29575 -32.25085 -31.14824 -29.72868 -27.78115 -27.08427 -25.22705 -23.52954 -22.42238 -19.94401 -19.76692 -19.61768 -19.16034 -19.09739 -17.64888 -17.09464 -16.53833 -16.05422 -15.57435 -15.21760 -15.14343 -15.01435 -14.88713 -14.69717 -14.51155 -14.41914 -14.40896 -14.20996 -13.48438 -13.13049 -12.89316 -12.77120 -12.66502 -12.22370 -12.05809 -11.71580 -11.47338 -11.09730 -11.04934 -10.83265 -10.63606 -10.51750 -10.23069 -9.73193 -9.38201 -9.04935 -8.96409 -8.74134 -8.39976 -7.75482 -6.29872 -4.39874 -0.44258 1.09284 2.55694 3.05238 3.19215 3.27474 3.30658 3.36287 3.37269 3.63653 4.12980 4.23642 4.30202 4.39722 4.81863 4.96218 5.34721 5.42049 5.52465 5.59115 5.72943 5.94838 6.05003 6.46678 6.50724 6.66121 6.85345 6.89580 7.20104 7.27868 7.54541 7.72194 7.99019 8.43091 8.63964 9.01427 9.27420 9.33251 10.76441 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.036894 B = 0.002176 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.756789 B =12863.971159 C =13177.418805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.116 4.116 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.718 3.282 15 O -0.592 6.592 16 N -0.750 5.750 17 C 0.160 3.840 18 C -0.115 4.115 19 S -0.137 6.137 20 C 0.463 3.537 21 F -0.168 7.168 22 F -0.149 7.149 23 F -0.168 7.168 24 C 0.114 3.886 25 H 0.270 0.730 26 H 0.381 0.619 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.395 0.605 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 -20.194 -4.291 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.363 5.363 14 C 0.420 3.580 15 O -0.471 6.471 16 N -0.409 5.409 17 C 0.034 3.966 18 C -0.264 4.264 19 S 0.083 5.917 20 C 0.301 3.699 21 F -0.150 7.150 22 F -0.131 7.131 23 F -0.150 7.150 24 C -0.008 4.008 25 H 0.080 0.920 26 H 0.231 0.769 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.229 0.771 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.247 -19.793 -5.090 20.874 hybrid contribution 1.478 0.261 0.615 1.622 sum -2.768 -19.532 -4.475 20.229 Atomic orbital electron populations 1.69756 1.05954 1.27928 1.49193 1.25088 0.95034 0.99802 0.93330 0.86403 0.79911 0.82533 0.78137 1.20519 1.20918 1.19657 1.21452 0.94096 0.90154 1.52085 0.91490 1.19629 0.87012 0.91726 0.80923 1.86099 1.57125 1.55644 1.40200 1.22598 0.97323 0.94674 1.00769 1.21955 0.87641 0.96566 0.95777 1.47957 1.19773 1.09614 1.58911 1.15431 0.82281 0.80740 0.79548 1.90909 1.38242 1.65492 1.52423 1.44975 1.25028 1.05406 1.65517 1.20570 0.90482 0.85485 1.00098 1.23886 0.98160 0.99193 1.05133 1.88322 1.32485 0.92964 1.77954 1.22735 0.76626 0.94498 0.76027 1.93331 1.95719 1.95091 1.30838 1.93265 1.59469 1.74717 1.85633 1.93326 1.45378 1.94725 1.81599 1.23199 1.02667 0.74801 1.00146 0.91975 0.76930 0.90374 0.90737 0.92619 0.93094 0.77116 0.90263 0.90297 0.87460 0.87412 0.89505 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 10.70 55.43 0.59 -22.78 16 2 C 0.07 1.82 5.27 -17.82 -0.09 1.72 16 3 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.54 -13.66 8.25 -34.44 -0.28 -13.94 16 8 H 0.07 1.66 7.79 -52.49 -0.41 1.25 16 9 C 0.25 5.80 0.88 -89.62 -0.08 5.72 16 10 O -0.58 -14.37 13.17 -35.23 -0.46 -14.84 16 11 C -0.12 -2.17 6.13 -24.87 -0.15 -2.33 16 12 C 0.10 1.69 6.15 -3.04 -0.02 1.67 16 13 N -0.63 -12.39 3.33 -176.21 -0.59 -12.98 16 14 C 0.72 13.84 8.49 -86.91 -0.74 13.10 16 15 O -0.59 -13.84 16.60 5.29 0.09 -13.76 16 16 N -0.75 -10.03 5.52 -65.22 -0.36 -10.39 16 17 C 0.16 1.76 5.68 -4.05 -0.02 1.74 16 18 C -0.11 -0.86 6.02 37.16 0.22 -0.64 16 19 S -0.14 -1.14 21.77 -107.50 -2.34 -3.48 16 20 C 0.46 3.84 3.51 101.05 0.35 4.20 16 21 F -0.17 -1.44 17.34 2.25 0.04 -1.41 16 22 F -0.15 -1.32 17.36 2.25 0.04 -1.28 16 23 F -0.17 -1.43 17.34 2.25 0.04 -1.39 16 24 C 0.11 2.67 5.39 -2.53 -0.01 2.66 16 25 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 26 H 0.38 9.71 7.54 45.56 0.34 10.06 16 27 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.39 4.18 7.46 -40.82 -0.30 3.87 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.09 2.33 7.31 -51.93 -0.38 1.95 16 37 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -29.47 341.23 -7.33 -36.80 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -3.68 Total: 11.49 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: -0.82 Total: 13.90 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.35 Total: -46.15 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.38 Total: -28.59 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.12 Total: -4.07 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.34 Total: -3.48 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.47 -7.33 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825820885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.644 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds