Wall clock time and date at job start Tue Mar 31 2020 15:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47140 * 274.99124 * 3 2 1 5 5 H 1.48506 * 109.47182 * 34.98648 * 3 2 1 6 6 H 1.48500 * 109.47323 * 154.98882 * 3 2 1 7 7 C 1.37881 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00331 * 173.96633 * 7 2 1 9 9 C 1.50705 * 119.99392 * 354.23595 * 7 2 1 10 10 O 1.42894 * 110.88944 * 299.79209 * 9 7 2 11 11 C 1.55156 * 111.00016 * 175.91314 * 9 7 2 12 12 C 1.54371 * 102.92059 * 206.45621 * 11 9 7 13 13 N 1.47021 * 107.28632 * 22.13773 * 12 11 9 14 14 C 1.34782 * 125.64903 * 181.12818 * 13 12 11 15 15 O 1.21584 * 120.00086 * 179.97438 * 14 13 12 16 16 N 1.34783 * 119.99610 * 359.95841 * 14 13 12 17 17 C 1.46495 * 119.99751 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47267 * 180.02562 * 17 16 14 19 19 S 1.81400 * 109.47492 * 179.97438 * 18 17 16 20 20 C 1.81398 * 103.00089 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.47193 * 60.00207 * 20 19 18 22 22 F 1.39906 * 109.47003 * 180.02562 * 20 19 18 23 23 F 1.39892 * 109.47064 * 300.00033 * 20 19 18 24 24 C 1.47424 * 108.70527 * 1.09378 * 13 12 11 25 25 H 0.96997 * 120.00732 * 359.97438 * 1 2 3 26 26 H 0.96708 * 113.99643 * 59.30012 * 10 9 7 27 27 H 1.09003 * 110.72309 * 324.78746 * 11 9 7 28 28 H 1.08998 * 110.71846 * 88.06318 * 11 9 7 29 29 H 1.08996 * 109.84786 * 262.73547 * 12 11 9 30 30 H 1.09004 * 109.90305 * 141.57781 * 12 11 9 31 31 H 0.96999 * 120.00285 * 0.02562 * 16 14 13 32 32 H 1.09004 * 109.47451 * 300.00363 * 17 16 14 33 33 H 1.09004 * 109.47402 * 60.00167 * 17 16 14 34 34 H 1.08995 * 109.47222 * 300.00290 * 18 17 16 35 35 H 1.09004 * 109.46728 * 60.00299 * 18 17 16 36 36 H 1.08999 * 110.36723 * 217.02770 * 24 13 12 37 37 H 1.09001 * 110.45885 * 94.75631 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4121 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1965 -0.0988 9 6 1.2568 -2.4959 0.1300 10 8 0.5317 -2.5459 1.3603 11 6 2.2200 -3.7056 0.0025 12 6 1.2979 -4.8274 -0.5212 13 7 0.1417 -4.1805 -1.1587 14 6 -0.9036 -4.8184 -1.7219 15 8 -1.8086 -4.1786 -2.2218 16 7 -0.9454 -6.1655 -1.7311 17 6 -2.0818 -6.8589 -2.3426 18 6 -1.8835 -8.3709 -2.2187 19 16 -3.2910 -9.2294 -2.9753 20 6 -2.8800 -10.9795 -2.7323 21 9 -2.7608 -11.2448 -1.3639 22 9 -3.8935 -11.7763 -3.2758 23 9 -1.6687 -11.2669 -3.3703 24 6 0.3146 -2.7186 -1.0793 25 1 -0.4851 0.8400 0.0004 26 1 -0.1179 -1.8369 1.4630 27 1 3.0135 -3.4930 -0.7140 28 1 2.6370 -3.9705 0.9741 29 1 0.9634 -5.4493 0.3090 30 1 1.8315 -5.4358 -1.2515 31 1 -0.2235 -6.6760 -1.3321 32 1 -3.0009 -6.5703 -1.8325 33 1 -2.1499 -6.5861 -3.3958 34 1 -0.9645 -8.6598 -2.7285 35 1 -1.8158 -8.6433 -1.1654 36 1 -0.6453 -2.2319 -0.9070 37 1 0.7731 -2.3390 -1.9924 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825820885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:37 Heat of formation + Delta-G solvation = -234.673890 kcal Electronic energy + Delta-G solvation = -25531.092831 eV Core-core repulsion = 21019.577337 eV Total energy + Delta-G solvation = -4511.515495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.086 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.36892 -49.00241 -48.95085 -41.25995 -39.17701 -36.46813 -36.04418 -34.20946 -32.41881 -31.07587 -29.46204 -27.76585 -26.97504 -24.72903 -23.72098 -21.45089 -21.15610 -20.52722 -19.80960 -19.78464 -19.25351 -18.80354 -17.58316 -17.15400 -17.02688 -16.49088 -16.24151 -16.17031 -15.80488 -15.76019 -15.61017 -15.35957 -15.08490 -15.07322 -14.92764 -14.71643 -14.59585 -13.86099 -13.57575 -13.51640 -13.40057 -13.30229 -13.02303 -12.81608 -12.48370 -12.31023 -12.22118 -12.06833 -11.73365 -11.35573 -11.15019 -10.67700 -10.35030 -10.24764 -9.61541 -9.32747 -8.23001 -6.40037 -1.10752 0.44177 1.42441 1.45712 1.55535 1.73726 1.90958 2.13337 2.39583 2.71919 2.72125 3.02472 3.10615 3.37330 3.69826 3.81643 4.11034 4.19810 4.21575 4.37516 4.55150 4.64044 4.69799 4.80094 5.10827 5.14013 5.29813 5.33758 5.43047 5.48614 5.78161 6.04945 6.16568 6.67295 7.04383 7.29262 7.35104 7.54192 8.81400 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.036894 B = 0.002176 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.756789 B =12863.971159 C =13177.418805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.231 3.769 10 O -0.586 6.586 11 C -0.111 4.111 12 C 0.106 3.894 13 N -0.632 5.632 14 C 0.712 3.288 15 O -0.642 6.642 16 N -0.725 5.725 17 C 0.159 3.841 18 C -0.103 4.103 19 S -0.148 6.148 20 C 0.470 3.530 21 F -0.168 7.168 22 F -0.153 7.153 23 F -0.168 7.168 24 C 0.128 3.872 25 H 0.268 0.732 26 H 0.372 0.628 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.413 0.587 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.043 0.957 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 -22.184 -4.154 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.190 3.810 10 O -0.393 6.393 11 C -0.149 4.149 12 C -0.016 4.016 13 N -0.368 5.368 14 C 0.414 3.586 15 O -0.525 6.525 16 N -0.384 5.384 17 C 0.034 3.966 18 C -0.252 4.252 19 S 0.072 5.928 20 C 0.308 3.692 21 F -0.150 7.150 22 F -0.135 7.135 23 F -0.150 7.150 24 C 0.004 3.996 25 H 0.078 0.922 26 H 0.220 0.780 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.251 0.749 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.062 0.938 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.663 -21.865 -4.939 22.574 hybrid contribution 0.971 0.843 0.556 1.401 sum -1.692 -21.022 -4.383 21.541 Atomic orbital electron populations 1.69885 1.07140 1.28331 1.49969 1.25824 0.95704 1.02832 0.93170 0.85477 0.78904 0.78900 0.77931 1.20440 1.21006 1.18917 1.21809 0.94416 0.91367 1.51812 0.91233 1.19871 0.87646 0.93327 0.80132 1.86090 1.57002 1.55194 1.41043 1.22606 0.97044 0.93264 1.01971 1.22163 0.86148 0.95905 0.97397 1.47869 1.21183 1.08314 1.59466 1.15651 0.81468 0.82341 0.79154 1.90872 1.40022 1.67126 1.54447 1.44687 1.26023 1.03271 1.64464 1.20599 0.89132 0.87670 0.99244 1.23784 0.98618 0.96202 1.06585 1.88457 1.32960 0.93260 1.78092 1.22624 0.76482 0.94198 0.75917 1.93332 1.95710 1.95088 1.30891 1.93259 1.59700 1.74801 1.85705 1.93328 1.45313 1.94716 1.81599 1.22685 1.00222 0.77206 0.99439 0.92224 0.77955 0.89312 0.89588 0.90557 0.88826 0.74930 0.91482 0.91036 0.85318 0.85637 0.93790 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.52 10.70 21.45 0.23 -49.29 16 2 C 0.03 1.33 5.27 84.66 0.45 1.77 16 3 Si 0.96 41.22 29.54 68.60 2.03 43.24 16 4 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.56 -28.21 8.25 25.60 0.21 -28.00 16 8 H 0.07 3.40 7.79 -2.91 -0.02 3.38 16 9 C 0.23 10.79 0.88 -10.15 -0.01 10.78 16 10 O -0.59 -29.17 13.17 -148.98 -1.96 -31.14 16 11 C -0.11 -3.92 6.13 31.80 0.19 -3.73 16 12 C 0.11 3.09 6.15 86.75 0.53 3.63 16 13 N -0.63 -24.48 3.33 -829.66 -2.76 -27.24 16 14 C 0.71 27.03 8.49 179.05 1.52 28.55 16 15 O -0.64 -30.79 16.60 -3.98 -0.07 -30.85 16 16 N -0.73 -17.76 5.52 -478.53 -2.64 -20.40 16 17 C 0.16 3.24 5.68 86.38 0.49 3.73 16 18 C -0.10 -1.25 6.02 71.98 0.43 -0.81 16 19 S -0.15 -2.18 21.77 -56.49 -1.23 -3.41 16 20 C 0.47 6.83 3.51 113.37 0.40 7.23 16 21 F -0.17 -2.51 17.34 44.97 0.78 -1.73 16 22 F -0.15 -2.47 17.36 44.97 0.78 -1.69 16 23 F -0.17 -2.44 17.34 44.97 0.78 -1.66 16 24 C 0.13 6.18 5.39 86.85 0.47 6.65 16 25 H 0.27 14.00 8.31 -92.71 -0.77 13.22 16 26 H 0.37 19.63 7.54 -74.05 -0.56 19.07 16 27 H 0.09 2.92 8.03 -2.39 -0.02 2.90 16 28 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 31 H 0.41 7.12 7.46 -92.71 -0.69 6.43 16 32 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.04 2.47 7.31 -2.39 -0.02 2.46 16 37 H 0.04 1.97 8.03 -2.39 -0.02 1.95 16 Total: -1.00 -66.18 341.23 0.51 -65.67 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -0.11 Total: 28.70 kcal Atomic # 6 Polarization: 25.11 SS G_CDS: 4.69 Total: 29.80 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -5.17 Total: -96.93 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: -2.03 Total: -61.99 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 2.34 Total: -5.09 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -1.23 Total: -3.41 kcal Total: -66.18 0.51 -65.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825820885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.006 kcal (2) G-P(sol) polarization free energy of solvation -66.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds