Wall clock time and date at job start Tue Mar 31 2020 15:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99656 * 2 1 4 4 H 1.08991 * 109.47851 * 329.99895 * 3 2 1 5 5 C 1.53006 * 109.47175 * 90.00294 * 3 2 1 6 6 C 1.50706 * 109.46744 * 209.99696 * 3 2 1 7 7 N 1.29374 * 124.69913 * 315.02434 * 6 3 2 8 8 C 1.30949 * 117.46256 * 180.02562 * 7 6 3 9 9 C 1.50696 * 123.03810 * 180.02562 * 8 7 6 10 10 C 1.36773 * 113.92077 * 359.97438 * 8 7 6 11 11 C 1.46568 * 126.17886 * 180.02562 * 10 8 7 12 12 O 1.21723 * 119.99926 * 351.05263 * 11 10 8 13 13 N 1.34774 * 119.99949 * 171.05303 * 11 10 8 14 14 C 1.36894 * 120.00026 * 182.44574 * 13 11 10 15 15 H 1.08006 * 119.99689 * 19.87252 * 14 13 11 16 16 C 1.39006 * 119.99997 * 199.87611 * 14 13 11 17 17 N 1.31390 * 120.00208 * 22.60312 * 16 14 13 18 18 Si 1.86809 * 119.99616 * 202.60509 * 16 14 13 19 19 H 1.48493 * 109.47221 * 59.99826 * 18 16 14 20 20 H 1.48500 * 109.46761 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46997 * 299.99501 * 18 16 14 22 22 C 1.46500 * 120.00422 * 2.44797 * 13 11 10 23 23 C 1.50699 * 109.47473 * 80.30334 * 22 13 11 24 24 O 1.20833 * 119.99669 * 0.02562 * 23 22 13 25 25 O 1.34221 * 120.00339 * 180.02562 * 23 22 13 26 26 S 1.70919 * 124.69843 * 134.72862 * 6 3 2 27 27 H 1.08997 * 109.47042 * 300.00314 * 1 2 3 28 28 H 1.08996 * 109.46920 * 60.00192 * 1 2 3 29 29 H 1.08995 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47408 * 59.98971 * 5 3 2 31 31 H 1.08995 * 109.47239 * 180.02562 * 5 3 2 32 32 H 1.09008 * 109.46591 * 299.99288 * 5 3 2 33 33 H 1.08999 * 109.47820 * 90.02046 * 9 8 7 34 34 H 1.09002 * 109.46856 * 210.02165 * 9 8 7 35 35 H 1.09000 * 109.47313 * 330.01756 * 9 8 7 36 36 H 0.97005 * 120.00058 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.47660 * 200.30929 * 22 13 11 38 38 H 1.09004 * 109.46900 * 320.30507 * 22 13 11 39 39 H 0.96698 * 117.00428 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2177 1.7714 1.4426 6 6 3.3387 1.2639 -0.7104 7 7 4.2412 0.3543 -0.5318 8 6 5.3472 0.4566 -1.2253 9 6 6.4796 -0.5318 -1.1166 10 6 5.3814 1.5411 -2.0580 11 6 6.4828 1.9119 -2.9511 12 8 7.5471 1.3254 -2.8807 13 7 6.3172 2.9022 -3.8501 14 6 7.3286 3.2150 -4.7180 15 1 8.1126 2.4985 -4.9143 16 6 7.3467 4.4547 -5.3464 17 7 6.7003 5.4689 -4.8174 18 14 8.2900 4.6787 -6.9432 19 1 7.7422 3.7616 -7.9746 20 1 8.1533 6.0831 -7.4060 21 1 9.7250 4.3698 -6.7179 22 6 5.0548 3.6440 -3.8987 23 6 5.0436 4.6883 -2.8123 24 8 5.9930 4.8016 -2.0735 25 8 3.9791 5.4925 -2.6653 26 16 3.8588 2.4079 -1.8689 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.8829 1.0775 1.9564 31 1 2.6606 2.7673 1.4426 32 1 1.2568 1.8015 1.9563 33 1 6.3339 -1.3325 -1.8417 34 1 7.4238 -0.0262 -1.3184 35 1 6.5000 -0.9517 -0.1109 36 1 6.7126 6.3340 -5.2562 37 1 4.9554 4.1288 -4.8698 38 1 4.2229 2.9555 -3.7495 39 1 4.0182 6.1472 -1.9548 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831492721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:29 Heat of formation + Delta-G solvation = -103.323897 kcal Electronic energy + Delta-G solvation = -26887.151508 eV Core-core repulsion = 22923.188517 eV Total energy + Delta-G solvation = -3963.962991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.82386 -39.58151 -38.34187 -37.71030 -35.42185 -34.72242 -32.68847 -32.07293 -30.19011 -28.26143 -27.82664 -26.90971 -25.21077 -24.76317 -21.71426 -21.51059 -20.82191 -18.35336 -17.89076 -17.45459 -17.07234 -16.44005 -16.13039 -15.91694 -15.61820 -15.38470 -14.79538 -14.75211 -14.47602 -14.09768 -13.61476 -13.31210 -13.09737 -12.96363 -12.68427 -12.54458 -12.27466 -12.12749 -11.91230 -11.82646 -11.77066 -11.51426 -11.13237 -11.07480 -10.89269 -10.66281 -10.60637 -10.52173 -9.93900 -9.86166 -9.34758 -9.11845 -8.88231 -8.68542 -8.32236 -8.05472 -6.71529 -4.09548 0.69676 1.56940 1.99219 2.90592 3.09794 3.12128 3.15649 3.29601 3.59458 3.78145 3.94182 4.16215 4.23136 4.49253 4.71204 4.85410 4.99589 5.15477 5.23698 5.27157 5.43971 5.48757 5.55808 5.59214 5.61531 5.68039 6.08477 6.13281 6.16503 6.26161 6.31318 6.36352 6.88130 7.03152 7.27700 7.31595 7.72134 8.10486 8.16833 8.78952 8.83143 9.00478 9.58764 10.36032 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.004477 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.316915 B = 6252.113455 C = 7098.236644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.172 3.828 4 H 0.077 0.923 5 C -0.166 4.166 6 C -0.006 4.006 7 N -0.444 5.444 8 C 0.105 3.895 9 C -0.080 4.080 10 C -0.243 4.243 11 C 0.523 3.477 12 O -0.556 6.556 13 N -0.410 5.410 14 C -0.300 4.300 15 H 0.115 0.885 16 C 0.032 3.968 17 N -0.864 5.864 18 Si 0.935 3.065 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.269 1.269 22 C 0.127 3.873 23 C 0.487 3.513 24 O -0.492 6.492 25 O -0.528 6.528 26 S 0.161 5.839 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.277 0.723 37 H 0.141 0.859 38 H 0.084 0.916 39 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.516 -2.096 5.046 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.284 6.284 3 C 0.111 3.889 4 H 0.095 0.905 5 C -0.225 4.225 6 C -0.281 4.281 7 N -0.159 5.159 8 C -0.032 4.032 9 C -0.139 4.139 10 C -0.367 4.367 11 C 0.312 3.688 12 O -0.441 6.441 13 N -0.127 5.127 14 C -0.428 4.428 15 H 0.133 0.867 16 C -0.174 4.174 17 N -0.501 5.501 18 Si 0.760 3.240 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.194 1.194 22 C -0.001 4.001 23 C 0.325 3.675 24 O -0.377 6.377 25 O -0.339 6.339 26 S 0.420 5.580 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.159 0.841 38 H 0.101 0.899 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -13.248 -2.130 4.879 14.277 hybrid contribution 0.717 0.638 -0.093 0.964 sum -12.531 -1.492 4.786 13.496 Atomic orbital electron populations 1.22847 0.81246 1.02941 0.99922 1.88104 1.19112 1.26233 1.94920 1.20393 0.87841 0.85691 0.94989 0.90470 1.22238 1.02753 1.02243 0.95262 1.27244 1.00090 0.98564 1.02196 1.65859 1.00611 1.25662 1.23740 1.20776 0.93987 0.95359 0.93121 1.20537 0.95473 0.96266 1.01664 1.26226 0.99545 1.01595 1.09338 1.16455 0.86003 0.85392 0.80941 1.90617 1.26355 1.56859 1.70280 1.43331 1.12098 1.27970 1.29349 1.19798 1.05606 1.00544 1.16844 0.86702 1.25422 0.98003 0.93913 1.00039 1.69856 1.42383 1.01033 1.36869 0.85844 0.80081 0.77391 0.80674 1.19414 1.20707 1.19377 1.20964 0.87352 0.91922 0.99891 1.23345 0.79281 0.81018 0.83820 1.90661 1.34466 1.68558 1.43985 1.84485 1.44951 1.47834 1.56613 1.84279 1.10748 1.28892 1.34064 0.93982 0.93927 0.89449 0.90805 0.91253 0.91655 0.91035 0.87870 0.91668 0.91245 0.84143 0.89924 0.74712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.37 -5.06 10.31 -35.23 -0.36 -5.43 16 3 C 0.17 2.29 3.22 -27.88 -0.09 2.20 16 4 H 0.08 0.83 7.78 -51.93 -0.40 0.43 16 5 C -0.17 -1.91 9.51 37.16 0.35 -1.56 16 6 C -0.01 -0.10 6.27 -13.31 -0.08 -0.18 16 7 N -0.44 -8.63 10.47 -7.47 -0.08 -8.71 16 8 C 0.10 2.17 6.83 -83.50 -0.57 1.60 16 9 C -0.08 -1.50 9.83 36.00 0.35 -1.14 16 10 C -0.24 -5.32 6.24 -36.75 -0.23 -5.55 16 11 C 0.52 13.23 7.18 -12.90 -0.09 13.14 16 12 O -0.56 -15.24 14.01 5.17 0.07 -15.17 16 13 N -0.41 -10.30 2.23 -117.62 -0.26 -10.56 16 14 C -0.30 -7.91 9.25 -15.01 -0.14 -8.05 16 15 H 0.12 3.12 7.45 -52.48 -0.39 2.73 16 16 C 0.03 0.78 4.80 -17.46 -0.08 0.70 16 17 N -0.86 -21.53 9.70 55.50 0.54 -20.99 16 18 Si 0.93 19.20 29.61 -169.99 -5.03 14.17 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 C 0.13 2.74 4.76 -5.19 -0.02 2.72 16 23 C 0.49 10.40 3.91 36.01 0.14 10.54 16 24 O -0.49 -12.48 16.72 -18.76 -0.31 -12.79 16 25 O -0.53 -8.76 13.38 -39.23 -0.53 -9.29 16 26 S 0.16 2.85 16.26 -107.50 -1.75 1.10 16 27 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 28 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.58 7.87 -51.92 -0.41 0.17 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.10 2.13 5.90 -51.93 -0.31 1.82 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 37 H 0.14 3.03 6.39 -51.93 -0.33 2.70 16 38 H 0.08 1.58 4.72 -24.28 -0.11 1.46 16 39 H 0.40 4.93 9.10 45.56 0.41 5.35 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -33.43 340.83 -5.57 -38.99 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -3.62 Total: 7.79 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 0.63 Total: 15.75 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.20 Total: -40.26 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -1.13 Total: -42.68 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.75 Total: 1.10 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.43 -5.57 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831492721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.330 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds