Wall clock time and date at job start Tue Mar 31 2020 15:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99656 * 2 1 4 4 H 1.08991 * 109.47851 * 329.99895 * 3 2 1 5 5 C 1.53006 * 109.47175 * 90.00294 * 3 2 1 6 6 C 1.50706 * 109.46744 * 209.99696 * 3 2 1 7 7 N 1.29374 * 124.69913 * 315.02434 * 6 3 2 8 8 C 1.30949 * 117.46256 * 180.02562 * 7 6 3 9 9 C 1.50696 * 123.03810 * 180.02562 * 8 7 6 10 10 C 1.36773 * 113.92077 * 359.97438 * 8 7 6 11 11 C 1.46568 * 126.17886 * 180.02562 * 10 8 7 12 12 O 1.21723 * 119.99926 * 351.05263 * 11 10 8 13 13 N 1.34774 * 119.99949 * 171.05303 * 11 10 8 14 14 C 1.36894 * 120.00026 * 182.44574 * 13 11 10 15 15 H 1.08006 * 119.99689 * 19.87252 * 14 13 11 16 16 C 1.39006 * 119.99997 * 199.87611 * 14 13 11 17 17 N 1.31390 * 120.00208 * 22.60312 * 16 14 13 18 18 Si 1.86809 * 119.99616 * 202.60509 * 16 14 13 19 19 H 1.48493 * 109.47221 * 59.99826 * 18 16 14 20 20 H 1.48500 * 109.46761 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46997 * 299.99501 * 18 16 14 22 22 C 1.46500 * 120.00422 * 2.44797 * 13 11 10 23 23 C 1.50699 * 109.47473 * 80.30334 * 22 13 11 24 24 O 1.20833 * 119.99669 * 0.02562 * 23 22 13 25 25 O 1.34221 * 120.00339 * 180.02562 * 23 22 13 26 26 S 1.70919 * 124.69843 * 134.72862 * 6 3 2 27 27 H 1.08997 * 109.47042 * 300.00314 * 1 2 3 28 28 H 1.08996 * 109.46920 * 60.00192 * 1 2 3 29 29 H 1.08995 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47408 * 59.98971 * 5 3 2 31 31 H 1.08995 * 109.47239 * 180.02562 * 5 3 2 32 32 H 1.09008 * 109.46591 * 299.99288 * 5 3 2 33 33 H 1.08999 * 109.47820 * 90.02046 * 9 8 7 34 34 H 1.09002 * 109.46856 * 210.02165 * 9 8 7 35 35 H 1.09000 * 109.47313 * 330.01756 * 9 8 7 36 36 H 0.97005 * 120.00058 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.47660 * 200.30929 * 22 13 11 38 38 H 1.09004 * 109.46900 * 320.30507 * 22 13 11 39 39 H 0.96698 * 117.00428 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2177 1.7714 1.4426 6 6 3.3387 1.2639 -0.7104 7 7 4.2412 0.3543 -0.5318 8 6 5.3472 0.4566 -1.2253 9 6 6.4796 -0.5318 -1.1166 10 6 5.3814 1.5411 -2.0580 11 6 6.4828 1.9119 -2.9511 12 8 7.5471 1.3254 -2.8807 13 7 6.3172 2.9022 -3.8501 14 6 7.3286 3.2150 -4.7180 15 1 8.1126 2.4985 -4.9143 16 6 7.3467 4.4547 -5.3464 17 7 6.7003 5.4689 -4.8174 18 14 8.2900 4.6787 -6.9432 19 1 7.7422 3.7616 -7.9746 20 1 8.1533 6.0831 -7.4060 21 1 9.7250 4.3698 -6.7179 22 6 5.0548 3.6440 -3.8987 23 6 5.0436 4.6883 -2.8123 24 8 5.9930 4.8016 -2.0735 25 8 3.9791 5.4925 -2.6653 26 16 3.8588 2.4079 -1.8689 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.8829 1.0775 1.9564 31 1 2.6606 2.7673 1.4426 32 1 1.2568 1.8015 1.9563 33 1 6.3339 -1.3325 -1.8417 34 1 7.4238 -0.0262 -1.3184 35 1 6.5000 -0.9517 -0.1109 36 1 6.7126 6.3340 -5.2562 37 1 4.9554 4.1288 -4.8698 38 1 4.2229 2.9555 -3.7495 39 1 4.0182 6.1472 -1.9548 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831492721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:28 Heat of formation + Delta-G solvation = -128.341229 kcal Electronic energy + Delta-G solvation = -26888.236341 eV Core-core repulsion = 22923.188517 eV Total energy + Delta-G solvation = -3965.047824 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51670 -41.10890 -39.87578 -38.94136 -37.13596 -36.49630 -34.12294 -33.74099 -31.48298 -29.99228 -29.50187 -27.69121 -26.75461 -26.23049 -23.32787 -22.87245 -22.39498 -19.94263 -19.37082 -19.22179 -18.77672 -17.79742 -17.66001 -17.40630 -16.95348 -16.55933 -16.41699 -16.34081 -15.90290 -15.74024 -15.02690 -14.98742 -14.57645 -14.23304 -13.93164 -13.81973 -13.71600 -13.64453 -13.49022 -13.21033 -13.06208 -12.79591 -12.60412 -12.54764 -12.43288 -12.22258 -12.14332 -11.97063 -11.65924 -11.11597 -10.97235 -10.66353 -10.49692 -10.37947 -10.06310 -9.68660 -8.56998 -6.06723 -0.81862 0.07993 0.47490 1.29922 1.42736 1.47857 1.54690 1.63942 1.96672 2.22474 2.42470 2.68133 2.83977 2.96032 3.03792 3.70271 3.72565 3.91719 4.02866 4.05528 4.07616 4.45774 4.51948 4.60541 4.64201 4.69297 4.69875 4.75028 4.85214 4.87378 4.91763 5.20454 5.33073 5.38386 5.83287 5.85759 6.15481 6.22800 6.65389 6.92286 7.08689 7.29327 7.71201 8.49999 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.004477 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.316915 B = 6252.113455 C = 7098.236644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.395 6.395 3 C 0.166 3.834 4 H 0.110 0.890 5 C -0.163 4.163 6 C 0.017 3.983 7 N -0.466 5.466 8 C 0.112 3.888 9 C -0.078 4.078 10 C -0.296 4.296 11 C 0.513 3.487 12 O -0.597 6.597 13 N -0.423 5.423 14 C -0.344 4.344 15 H 0.090 0.910 16 C 0.006 3.994 17 N -0.880 5.880 18 Si 0.999 3.001 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.279 1.279 22 C 0.125 3.875 23 C 0.497 3.503 24 O -0.537 6.537 25 O -0.507 6.507 26 S 0.205 5.795 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.282 0.718 37 H 0.139 0.861 38 H 0.107 0.893 39 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 -1.323 5.541 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.314 6.314 3 C 0.105 3.895 4 H 0.128 0.872 5 C -0.222 4.222 6 C -0.258 4.258 7 N -0.181 5.181 8 C -0.026 4.026 9 C -0.137 4.137 10 C -0.420 4.420 11 C 0.304 3.696 12 O -0.484 6.484 13 N -0.140 5.140 14 C -0.472 4.472 15 H 0.107 0.893 16 C -0.198 4.198 17 N -0.517 5.517 18 Si 0.821 3.179 19 H -0.183 1.183 20 H -0.193 1.193 21 H -0.204 1.204 22 C -0.003 4.003 23 C 0.338 3.662 24 O -0.426 6.426 25 O -0.320 6.320 26 S 0.466 5.534 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.124 0.876 39 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -16.485 -1.313 5.367 17.386 hybrid contribution 1.474 0.350 -0.062 1.516 sum -15.011 -0.964 5.305 15.950 Atomic orbital electron populations 1.23117 0.78711 1.04238 1.01601 1.88061 1.21863 1.26300 1.95132 1.20730 0.86199 0.86676 0.95916 0.87203 1.22241 1.04221 1.01746 0.93966 1.28219 1.00916 0.96576 1.00114 1.65993 1.00777 1.26838 1.24496 1.21113 0.94564 0.94927 0.91995 1.20510 0.93910 0.96080 1.03230 1.25951 1.01458 1.03928 1.10634 1.16962 0.86561 0.85047 0.81077 1.90559 1.28269 1.58030 1.71547 1.43420 1.12951 1.28422 1.29218 1.19737 1.06858 1.01287 1.19274 0.89259 1.26167 0.98579 0.92924 1.02165 1.69911 1.42934 1.01227 1.37610 0.84913 0.78046 0.77925 0.76987 1.18259 1.19335 1.20415 1.21080 0.86761 0.92387 1.00047 1.23181 0.79247 0.80946 0.82865 1.90653 1.36398 1.69887 1.45663 1.84408 1.42518 1.47623 1.57405 1.83812 1.07749 1.27992 1.33866 0.91844 0.92622 0.88520 0.92801 0.90763 0.88382 0.89879 0.90325 0.89509 0.90769 0.84387 0.87617 0.72072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.39 -9.65 10.31 -148.98 -1.54 -11.19 16 3 C 0.17 3.82 3.22 29.85 0.10 3.92 16 4 H 0.11 1.82 7.78 -2.39 -0.02 1.80 16 5 C -0.16 -3.18 9.51 71.98 0.68 -2.49 16 6 C 0.02 0.55 6.27 88.47 0.55 1.11 16 7 N -0.47 -17.62 10.47 -177.54 -1.86 -19.48 16 8 C 0.11 4.67 6.83 42.35 0.29 4.96 16 9 C -0.08 -2.99 9.83 71.23 0.70 -2.29 16 10 C -0.30 -13.20 6.24 24.10 0.15 -13.05 16 11 C 0.51 27.25 7.18 86.42 0.62 27.87 16 12 O -0.60 -34.91 14.01 -4.42 -0.06 -34.97 16 13 N -0.42 -22.08 2.23 -644.24 -1.44 -23.52 16 14 C -0.34 -19.02 9.25 84.09 0.78 -18.25 16 15 H 0.09 5.22 7.45 -2.91 -0.02 5.20 16 16 C 0.01 0.28 4.80 84.94 0.41 0.69 16 17 N -0.88 -43.99 9.70 21.67 0.21 -43.78 16 18 Si 1.00 39.80 29.61 68.60 2.03 41.83 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 21 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 22 C 0.12 5.40 4.76 85.63 0.41 5.80 16 23 C 0.50 20.93 3.91 71.24 0.28 21.21 16 24 O -0.54 -27.51 16.72 21.94 0.37 -27.14 16 25 O -0.51 -15.61 13.38 -51.33 -0.69 -16.30 16 26 S 0.21 6.96 16.26 -56.49 -0.92 6.04 16 27 H 0.06 0.64 7.87 -2.39 -0.02 0.62 16 28 H 0.06 0.65 8.08 -2.39 -0.02 0.63 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.29 7.87 -2.38 -0.02 1.27 16 33 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.08 3.43 5.90 -2.39 -0.01 3.42 16 35 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.28 13.14 8.31 -92.70 -0.77 12.36 16 37 H 0.14 5.98 6.39 -2.39 -0.02 5.97 16 38 H 0.11 3.96 4.72 -19.96 -0.09 3.87 16 39 H 0.42 9.19 9.10 -74.06 -0.67 8.51 16 Total: -1.00 -76.18 340.83 2.66 -73.52 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.36 Total: 24.01 kcal Atomic # 6 Polarization: 24.79 SS G_CDS: 6.19 Total: 30.98 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -3.08 Total: -86.78 kcal Atomic # 8 Polarization: -87.68 SS G_CDS: -1.92 Total: -89.60 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -0.92 Total: 6.04 kcal Total: -76.18 2.66 -73.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831492721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.825 kcal (2) G-P(sol) polarization free energy of solvation -76.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds