Wall clock time and date at job start Tue Mar 31 2020 14:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86795 * 120.00147 * 2 1 4 4 H 1.48501 * 109.46985 * 240.00236 * 3 2 1 5 5 H 1.48500 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47478 * 119.99547 * 3 2 1 7 7 C 1.38653 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99953 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99958 * 174.96083 * 9 7 2 11 11 C 1.38951 * 120.03278 * 5.36957 * 10 9 7 12 12 C 1.38130 * 120.07345 * 179.97438 * 11 10 9 13 13 C 1.38192 * 120.14368 * 359.72645 * 12 11 10 14 14 C 1.38947 * 120.06146 * 0.55332 * 13 12 11 15 15 N 1.39834 * 120.03635 * 179.72270 * 14 13 12 16 16 C 1.34777 * 119.99618 * 214.85757 * 15 14 13 17 17 O 1.21525 * 120.00094 * 355.48120 * 16 15 14 18 18 C 1.48113 * 119.99639 * 175.48418 * 16 15 14 19 19 C 1.39817 * 120.89370 * 0.26780 * 18 16 15 20 20 C 1.38514 * 119.19581 * 180.27641 * 19 18 16 21 21 N 1.31452 * 121.04010 * 359.72127 * 20 19 18 22 22 C 1.32703 * 121.96529 * 0.02562 * 21 20 19 23 23 C 1.48059 * 119.66177 * 180.02562 * 22 21 20 24 24 O 1.21429 * 120.00375 * 179.97438 * 23 22 21 25 25 O 1.34685 * 119.99722 * 359.97438 * 23 22 21 26 26 C 1.39279 * 120.68034 * 359.97438 * 22 21 20 27 27 C 1.38727 * 120.03153 * 185.34687 * 10 9 7 28 28 H 0.96998 * 120.00168 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.96599 * 359.95956 * 11 10 9 30 30 H 1.08009 * 119.92591 * 180.02562 * 12 11 10 31 31 H 1.07998 * 119.96928 * 180.27473 * 13 12 11 32 32 H 0.97001 * 120.00109 * 34.85555 * 15 14 13 33 33 H 1.08005 * 120.40207 * 0.02562 * 19 18 16 34 34 H 1.07997 * 119.47876 * 179.74430 * 20 19 18 35 35 H 0.96698 * 117.00030 * 180.02562 * 25 23 22 36 36 H 1.08002 * 120.55505 * 180.02562 * 26 22 21 37 37 H 1.07999 * 120.06697 * 0.04738 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0700 -3.5047 -0.1052 11 6 3.4579 -3.4383 -0.0947 12 6 4.2070 -4.5939 -0.2017 13 6 3.5793 -5.8199 -0.3137 14 6 2.1918 -5.8925 -0.3307 15 7 1.5572 -7.1328 -0.4499 16 6 0.4028 -7.2357 -1.1379 17 8 -0.1293 -6.2386 -1.5846 18 6 -0.2172 -8.5641 -1.3496 19 6 0.3761 -9.7227 -0.8392 20 6 -0.2310 -10.9475 -1.0629 21 7 -1.3542 -11.0335 -1.7404 22 6 -1.9573 -9.9621 -2.2399 23 6 -3.2215 -10.1180 -2.9946 24 8 -3.7788 -9.1418 -3.4539 25 8 -3.7534 -11.3426 -3.1717 26 6 -1.4137 -8.6924 -2.0605 27 6 1.4366 -4.7332 -0.2233 28 1 -0.4850 0.8400 -0.0004 29 1 3.9515 -2.4821 -0.0031 30 1 5.2857 -4.5395 -0.1928 31 1 4.1677 -6.7220 -0.3927 32 1 1.9478 -7.9191 -0.0375 33 1 1.2986 -9.6639 -0.2807 34 1 0.2254 -11.8458 -0.6743 35 1 -4.5796 -11.3943 -3.6715 36 1 -1.9064 -7.8217 -2.4675 37 1 0.3580 -4.7872 -0.2321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:08 Heat of formation + Delta-G solvation = -70.835818 kcal Electronic energy + Delta-G solvation = -25693.357927 eV Core-core repulsion = 21595.359773 eV Total energy + Delta-G solvation = -4097.998154 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39251 -40.38308 -39.54720 -38.58764 -36.63635 -36.48395 -34.46181 -33.20857 -32.28258 -32.06398 -29.59761 -28.59641 -26.05533 -25.45653 -24.88229 -22.82350 -22.23185 -21.50068 -20.50422 -18.95451 -18.36201 -18.22311 -17.27286 -17.11410 -16.44372 -16.19015 -15.89011 -15.63215 -15.31518 -15.12708 -14.94594 -14.36287 -14.31823 -14.10531 -13.87392 -13.67752 -13.58332 -12.90678 -12.56381 -12.47884 -11.92526 -11.80686 -11.62503 -11.34116 -11.27624 -11.03482 -10.87711 -10.51203 -10.45596 -10.40125 -9.99374 -9.85413 -9.82956 -9.28932 -8.84429 -7.82077 -7.26006 -6.44424 -4.04024 -0.12941 0.33628 1.80903 2.02769 2.27384 2.35496 2.77582 2.89117 3.13076 3.15042 3.17719 3.39401 3.75048 3.95604 4.08218 4.26116 4.37814 4.41462 4.54511 4.85075 5.09052 5.14004 5.19328 5.30598 5.48347 5.55043 5.73137 5.88771 5.99903 6.01860 6.11087 6.30130 6.54873 6.74164 6.94745 7.00928 7.08150 7.28908 7.39994 7.48690 7.52890 7.68416 7.99304 8.06158 8.99914 9.69731 10.73115 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.002490 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.115818 B =11243.724631 C =12665.085644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.171 6.171 10 C 0.166 3.834 11 C -0.242 4.242 12 C -0.058 4.058 13 C -0.234 4.234 14 C 0.170 3.830 15 N -0.657 5.657 16 C 0.548 3.452 17 O -0.488 6.488 18 C -0.085 4.085 19 C -0.108 4.108 20 C 0.096 3.904 21 N -0.421 5.421 22 C 0.085 3.915 23 C 0.543 3.457 24 O -0.496 6.496 25 O -0.493 6.493 26 C -0.047 4.047 27 C -0.186 4.186 28 H 0.271 0.729 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.406 0.594 33 H 0.151 0.849 34 H 0.176 0.824 35 H 0.415 0.585 36 H 0.167 0.833 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.704 -22.938 -1.388 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.074 6.074 10 C 0.111 3.889 11 C -0.262 4.262 12 C -0.077 4.077 13 C -0.255 4.255 14 C 0.077 3.923 15 N -0.303 5.303 16 C 0.334 3.666 17 O -0.360 6.360 18 C -0.097 4.097 19 C -0.129 4.129 20 C -0.064 4.064 21 N -0.133 5.133 22 C -0.051 4.051 23 C 0.385 3.615 24 O -0.383 6.383 25 O -0.303 6.303 26 C -0.068 4.068 27 C -0.207 4.207 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.242 0.758 33 H 0.168 0.832 34 H 0.193 0.807 35 H 0.274 0.726 36 H 0.185 0.815 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.624 -22.494 -1.784 22.574 hybrid contribution 0.648 1.108 0.036 1.284 sum 1.272 -21.386 -1.748 21.495 Atomic orbital electron populations 1.70040 1.05995 1.27881 1.45372 1.25317 0.95846 0.98885 0.96461 0.85767 0.78691 0.79702 0.79174 1.19460 1.20260 1.19473 1.21306 0.91806 0.80740 1.53123 0.88972 1.83992 1.34264 1.11355 1.77760 1.19120 0.90032 0.87858 0.91898 1.21209 0.93736 0.99164 1.12071 1.20510 0.98474 0.91625 0.97066 1.20247 0.91626 0.97843 1.15736 1.17119 0.90922 0.83431 1.00818 1.43135 1.23786 1.10422 1.52934 1.18059 0.81298 0.87998 0.79233 1.90927 1.60674 1.36764 1.47681 1.20368 0.95848 0.94168 0.99282 1.22753 1.00385 0.92801 0.96955 1.22886 0.90880 0.97618 0.94992 1.67538 1.08429 1.31805 1.05492 1.19863 0.94772 0.89695 1.00723 1.20309 0.83488 0.80882 0.76859 1.90976 1.60621 1.40102 1.46553 1.84651 1.43253 1.31612 1.70802 1.22269 0.93106 0.98474 0.92971 1.20162 1.00608 0.89236 1.10669 0.91875 0.85343 0.86893 0.87267 0.75826 0.83177 0.80739 0.72641 0.81525 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -11.08 9.49 30.89 0.29 -10.78 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 9 O -0.17 -4.99 9.76 0.04 0.00 -4.99 16 10 C 0.17 4.09 6.64 -39.14 -0.26 3.83 16 11 C -0.24 -5.17 9.17 -39.36 -0.36 -5.53 16 12 C -0.06 -1.01 10.03 -39.64 -0.40 -1.40 16 13 C -0.23 -3.73 9.96 -39.34 -0.39 -4.12 16 14 C 0.17 2.99 6.29 -83.75 -0.53 2.46 16 15 N -0.66 -8.65 5.29 -10.66 -0.06 -8.70 16 16 C 0.55 8.04 7.64 -12.21 -0.09 7.94 16 17 O -0.49 -9.62 13.88 5.34 0.07 -9.55 16 18 C -0.09 -0.93 5.91 -104.68 -0.62 -1.55 16 19 C -0.11 -0.74 9.62 -38.89 -0.37 -1.12 16 20 C 0.10 0.65 11.17 -17.61 -0.20 0.45 16 21 N -0.42 -4.10 10.09 -9.87 -0.10 -4.20 16 22 C 0.09 0.94 6.74 -83.08 -0.56 0.38 16 23 C 0.54 5.96 8.32 34.76 0.29 6.25 16 24 O -0.50 -6.72 17.11 -19.21 -0.33 -7.05 16 25 O -0.49 -3.96 13.24 -40.45 -0.54 -4.49 16 26 C -0.05 -0.56 9.20 -38.62 -0.36 -0.92 16 27 C -0.19 -4.14 8.64 -39.20 -0.34 -4.48 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.13 2.72 5.63 -52.49 -0.30 2.42 16 30 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.41 3.38 6.97 -40.82 -0.28 3.10 16 33 H 0.15 0.49 6.53 -52.48 -0.34 0.14 16 34 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.41 1.26 9.11 45.56 0.42 1.68 16 36 H 0.17 2.21 7.33 -52.49 -0.38 1.83 16 37 H 0.13 3.21 6.22 -52.49 -0.33 2.88 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -37.46 337.69 -6.00 -43.46 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -1.89 Total: 7.30 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.99 Total: -7.58 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.60 Total: -37.75 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.79 Total: -26.08 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.46 -6.00 -43.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.376 kcal (2) G-P(sol) polarization free energy of solvation -37.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds