Wall clock time and date at job start Tue Mar 31 2020 14:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86795 * 120.00147 * 2 1 4 4 H 1.48501 * 109.46985 * 240.00236 * 3 2 1 5 5 H 1.48500 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47478 * 119.99547 * 3 2 1 7 7 C 1.38653 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99953 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99958 * 174.96083 * 9 7 2 11 11 C 1.38951 * 120.03278 * 5.36957 * 10 9 7 12 12 C 1.38130 * 120.07345 * 179.97438 * 11 10 9 13 13 C 1.38192 * 120.14368 * 359.72645 * 12 11 10 14 14 C 1.38947 * 120.06146 * 0.55332 * 13 12 11 15 15 N 1.39834 * 120.03635 * 179.72270 * 14 13 12 16 16 C 1.34777 * 119.99618 * 214.85757 * 15 14 13 17 17 O 1.21525 * 120.00094 * 355.48120 * 16 15 14 18 18 C 1.48113 * 119.99639 * 175.48418 * 16 15 14 19 19 C 1.39817 * 120.89370 * 0.26780 * 18 16 15 20 20 C 1.38514 * 119.19581 * 180.27641 * 19 18 16 21 21 N 1.31452 * 121.04010 * 359.72127 * 20 19 18 22 22 C 1.32703 * 121.96529 * 0.02562 * 21 20 19 23 23 C 1.48059 * 119.66177 * 180.02562 * 22 21 20 24 24 O 1.21429 * 120.00375 * 179.97438 * 23 22 21 25 25 O 1.34685 * 119.99722 * 359.97438 * 23 22 21 26 26 C 1.39279 * 120.68034 * 359.97438 * 22 21 20 27 27 C 1.38727 * 120.03153 * 185.34687 * 10 9 7 28 28 H 0.96998 * 120.00168 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.96599 * 359.95956 * 11 10 9 30 30 H 1.08009 * 119.92591 * 180.02562 * 12 11 10 31 31 H 1.07998 * 119.96928 * 180.27473 * 13 12 11 32 32 H 0.97001 * 120.00109 * 34.85555 * 15 14 13 33 33 H 1.08005 * 120.40207 * 0.02562 * 19 18 16 34 34 H 1.07997 * 119.47876 * 179.74430 * 20 19 18 35 35 H 0.96698 * 117.00030 * 180.02562 * 25 23 22 36 36 H 1.08002 * 120.55505 * 180.02562 * 26 22 21 37 37 H 1.07999 * 120.06697 * 0.04738 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0700 -3.5047 -0.1052 11 6 3.4579 -3.4383 -0.0947 12 6 4.2070 -4.5939 -0.2017 13 6 3.5793 -5.8199 -0.3137 14 6 2.1918 -5.8925 -0.3307 15 7 1.5572 -7.1328 -0.4499 16 6 0.4028 -7.2357 -1.1379 17 8 -0.1293 -6.2386 -1.5846 18 6 -0.2172 -8.5641 -1.3496 19 6 0.3761 -9.7227 -0.8392 20 6 -0.2310 -10.9475 -1.0629 21 7 -1.3542 -11.0335 -1.7404 22 6 -1.9573 -9.9621 -2.2399 23 6 -3.2215 -10.1180 -2.9946 24 8 -3.7788 -9.1418 -3.4539 25 8 -3.7534 -11.3426 -3.1717 26 6 -1.4137 -8.6924 -2.0605 27 6 1.4366 -4.7332 -0.2233 28 1 -0.4850 0.8400 -0.0004 29 1 3.9515 -2.4821 -0.0031 30 1 5.2857 -4.5395 -0.1928 31 1 4.1677 -6.7220 -0.3927 32 1 1.9478 -7.9191 -0.0375 33 1 1.2986 -9.6639 -0.2807 34 1 0.2254 -11.8458 -0.6743 35 1 -4.5796 -11.3943 -3.6715 36 1 -1.9064 -7.8217 -2.4675 37 1 0.3580 -4.7872 -0.2321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:07 Heat of formation + Delta-G solvation = -101.092897 kcal Electronic energy + Delta-G solvation = -25694.669972 eV Core-core repulsion = 21595.359773 eV Total energy + Delta-G solvation = -4099.310199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30094 -41.50458 -40.65465 -40.06086 -38.25794 -37.28072 -35.83764 -34.31367 -34.06777 -32.81727 -31.19928 -30.11075 -27.39003 -26.83569 -25.99282 -23.89157 -23.36392 -23.02537 -21.70819 -20.18702 -19.75024 -19.21737 -18.87821 -18.06745 -17.43367 -17.04334 -16.99826 -16.78541 -16.69294 -16.58392 -16.09017 -15.91063 -15.57459 -15.50476 -15.18406 -14.83905 -14.54137 -14.41693 -14.24642 -13.60813 -13.29408 -13.16408 -13.01836 -12.72614 -12.67098 -12.38769 -12.17207 -12.16008 -11.70303 -11.39240 -11.29257 -11.12071 -10.80104 -10.77279 -10.55398 -9.39514 -8.91487 -8.47182 -6.17132 -0.88894 -0.50177 0.43329 0.69713 1.10449 1.33806 1.45777 1.51314 1.53200 1.69931 1.85007 2.18194 2.58638 2.81958 3.05693 3.15930 3.21617 3.52617 3.58408 3.59703 3.75589 4.13490 4.20597 4.36013 4.40493 4.47645 4.51677 4.63767 4.71483 4.75944 5.00056 5.09888 5.25038 5.34295 5.37608 5.39159 5.62728 5.73222 6.01865 6.16634 6.27123 6.42627 6.84787 6.93960 6.96492 7.79041 8.76476 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.002490 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.115818 B =11243.724631 C =12665.085644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.028 4.028 3 Si 1.024 2.976 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.108 0.892 9 O -0.236 6.236 10 C 0.123 3.877 11 C -0.252 4.252 12 C -0.049 4.049 13 C -0.195 4.195 14 C 0.179 3.821 15 N -0.636 5.636 16 C 0.549 3.451 17 O -0.552 6.552 18 C -0.100 4.100 19 C -0.074 4.074 20 C 0.110 3.890 21 N -0.429 5.429 22 C 0.072 3.928 23 C 0.547 3.453 24 O -0.536 6.536 25 O -0.484 6.484 26 C -0.066 4.066 27 C -0.214 4.214 28 H 0.272 0.728 29 H 0.123 0.877 30 H 0.163 0.837 31 H 0.173 0.827 32 H 0.435 0.565 33 H 0.201 0.799 34 H 0.227 0.773 35 H 0.435 0.565 36 H 0.135 0.865 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.357 -27.307 -0.516 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.225 4.225 3 Si 0.842 3.158 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.125 0.875 9 O -0.143 6.143 10 C 0.072 3.928 11 C -0.271 4.271 12 C -0.067 4.067 13 C -0.215 4.215 14 C 0.085 3.915 15 N -0.284 5.284 16 C 0.337 3.663 17 O -0.428 6.428 18 C -0.111 4.111 19 C -0.094 4.094 20 C -0.051 4.051 21 N -0.141 5.141 22 C -0.062 4.062 23 C 0.390 3.610 24 O -0.425 6.425 25 O -0.297 6.297 26 C -0.088 4.088 27 C -0.236 4.236 28 H 0.081 0.919 29 H 0.141 0.859 30 H 0.180 0.820 31 H 0.190 0.810 32 H 0.277 0.723 33 H 0.218 0.782 34 H 0.244 0.756 35 H 0.297 0.703 36 H 0.152 0.848 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.310 -27.001 -0.903 27.533 hybrid contribution -0.663 1.936 -0.232 2.059 sum 4.648 -25.065 -1.135 25.517 Atomic orbital electron populations 1.70221 1.08343 1.28870 1.48948 1.26731 0.96847 1.03113 0.95823 0.84587 0.77293 0.73776 0.80142 1.18030 1.19924 1.17580 1.21885 0.92723 0.81231 1.53163 0.87455 1.83961 1.36287 1.12754 1.81295 1.19699 0.91846 0.87401 0.93830 1.21374 0.92377 1.00993 1.12403 1.21083 1.00711 0.90349 0.94588 1.20938 0.90616 0.99712 1.10249 1.17252 0.91861 0.83563 0.98835 1.42932 1.23192 1.09849 1.52445 1.18670 0.80924 0.88749 0.77965 1.90926 1.62329 1.39401 1.50189 1.20035 0.96096 0.93536 1.01424 1.23259 1.00916 0.90783 0.94409 1.23808 0.89292 0.99210 0.92777 1.67612 1.09697 1.30897 1.05894 1.19729 0.95194 0.89561 1.01765 1.20424 0.83449 0.81008 0.76158 1.90959 1.61807 1.41430 1.48351 1.84603 1.44447 1.29838 1.70788 1.22083 0.94191 0.98173 0.94334 1.20209 0.99604 0.90851 1.12911 0.91917 0.85880 0.81961 0.80989 0.72327 0.78240 0.75628 0.70257 0.84750 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.72 13.67 21.61 0.30 -59.42 16 2 C -0.03 -1.67 5.49 84.83 0.47 -1.20 16 3 Si 1.02 43.93 29.55 68.60 2.03 45.96 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.41 -24.90 9.49 67.92 0.64 -24.25 16 8 H 0.11 5.77 5.20 -2.91 -0.02 5.75 16 9 O -0.24 -15.09 9.76 -22.78 -0.22 -15.31 16 10 C 0.12 6.44 6.64 22.56 0.15 6.59 16 11 C -0.25 -10.70 9.17 22.42 0.21 -10.49 16 12 C -0.05 -1.48 10.03 22.23 0.22 -1.26 16 13 C -0.19 -5.10 9.96 22.43 0.22 -4.88 16 14 C 0.18 5.92 6.29 38.16 0.24 6.16 16 15 N -0.64 -14.75 5.29 -305.92 -1.62 -16.36 16 16 C 0.55 15.99 7.64 86.87 0.66 16.66 16 17 O -0.55 -23.62 13.88 -3.80 -0.05 -23.67 16 18 C -0.10 -2.05 5.91 -19.90 -0.12 -2.17 16 19 C -0.07 -0.62 9.62 22.72 0.22 -0.40 16 20 C 0.11 0.87 11.17 84.82 0.95 1.82 16 21 N -0.43 -7.10 10.09 -185.13 -1.87 -8.97 16 22 C 0.07 1.57 6.74 41.87 0.28 1.85 16 23 C 0.55 12.39 8.32 70.43 0.59 12.97 16 24 O -0.54 -15.76 17.11 20.06 0.34 -15.42 16 25 O -0.48 -7.42 13.24 -55.94 -0.74 -8.16 16 26 C -0.07 -1.66 9.20 22.89 0.21 -1.45 16 27 C -0.21 -10.08 8.64 22.52 0.19 -9.88 16 28 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 29 H 0.12 5.26 5.63 -2.91 -0.02 5.24 16 30 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.43 4.55 6.97 -92.71 -0.65 3.91 16 33 H 0.20 -0.35 6.53 -2.91 -0.02 -0.37 16 34 H 0.23 -0.47 8.06 -2.91 -0.02 -0.50 16 35 H 0.44 2.35 9.11 -74.06 -0.67 1.67 16 36 H 0.13 4.17 7.33 -2.91 -0.02 4.15 16 37 H 0.10 5.29 6.22 -2.91 -0.02 5.27 16 Total: -1.00 -97.61 337.69 3.17 -94.44 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -0.13 Total: 16.84 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 5.14 Total: -9.93 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -3.19 Total: -84.75 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -0.67 Total: -62.56 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -97.61 3.17 -94.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.652 kcal (2) G-P(sol) polarization free energy of solvation -97.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds