Wall clock time and date at job start Tue Mar 31 2020 16:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47021 * 2 1 4 4 O 1.42904 * 109.46948 * 179.97438 * 3 2 1 5 5 C 1.35648 * 117.00011 * 180.02562 * 4 3 2 6 6 C 1.39350 * 120.53676 * 0.26136 * 5 4 3 7 7 C 1.38302 * 118.43628 * 180.28612 * 6 5 4 8 8 C 1.38774 * 119.44542 * 359.45800 * 7 6 5 9 9 N 1.31372 * 121.06668 * 0.27535 * 8 7 6 10 10 C 1.32869 * 121.69602 * 0.02562 * 9 8 7 11 11 C 1.47825 * 119.78217 * 180.02562 * 10 9 8 12 12 O 1.21555 * 120.00179 * 180.02562 * 11 10 9 13 13 N 1.34777 * 120.00427 * 359.97438 * 11 10 9 14 14 S 1.65596 * 120.00517 * 179.97438 * 13 11 10 15 15 O 1.42096 * 104.28091 * 181.07839 * 14 13 11 16 16 O 1.42104 * 104.27673 * 308.93540 * 14 13 11 17 17 C 1.81404 * 104.44619 * 65.00502 * 14 13 11 18 18 C 1.50698 * 109.46972 * 180.02562 * 17 14 13 19 19 H 1.08000 * 120.00298 * 0.02562 * 18 17 14 20 20 C 1.37885 * 119.99955 * 179.97438 * 18 17 14 21 21 N 1.31508 * 119.99714 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47309 * 59.99932 * 22 20 18 24 24 H 1.48496 * 109.47162 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46984 * 300.00368 * 22 20 18 26 26 H 1.09000 * 109.46624 * 299.99895 * 1 2 3 27 27 H 1.08992 * 109.46969 * 59.99594 * 1 2 3 28 28 H 1.08998 * 109.46450 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47091 * 240.00360 * 2 1 3 30 30 H 1.08998 * 109.47622 * 120.00567 * 2 1 3 31 31 H 1.09001 * 109.46894 * 60.00239 * 3 2 1 32 32 H 1.08992 * 109.47580 * 300.00031 * 3 2 1 33 33 H 1.07996 * 120.78249 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.28034 * 179.73973 * 7 6 5 35 35 H 1.07996 * 119.46727 * 180.26429 * 8 7 6 36 36 H 0.97005 * 119.99926 * 0.02562 * 13 11 10 37 37 H 1.09004 * 109.47013 * 299.99868 * 17 14 13 38 38 H 1.08996 * 109.47143 * 60.00405 * 17 14 13 39 39 H 0.97001 * 119.99739 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0849 2.6511 0.0012 6 6 3.3369 3.8269 0.0067 7 6 4.0095 5.0353 0.0011 8 6 5.3973 5.0437 0.0016 9 7 6.0820 3.9225 0.0020 10 6 5.4810 2.7375 0.0014 11 6 6.2932 1.5024 0.0024 12 8 5.7475 0.4161 0.0014 13 7 7.6387 1.5805 0.0034 14 16 8.5485 0.1968 0.0052 15 8 9.8914 0.6604 0.0319 16 8 8.0170 -0.5707 1.0766 17 6 8.1782 -0.5903 -1.5866 18 6 8.9560 -1.8757 -1.7043 19 1 9.6076 -2.1881 -0.9017 20 6 8.8351 -2.6535 -2.8364 21 7 8.0413 -2.2734 -3.8136 22 14 9.7986 -4.2471 -2.9820 23 1 9.4143 -5.1608 -1.8763 24 1 9.4956 -4.8915 -4.2852 25 1 11.2525 -3.9557 -2.9006 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 2.2575 3.7952 0.0110 34 1 3.4595 5.9648 0.0009 35 1 5.9228 5.9871 0.0015 36 1 8.0742 2.4472 0.0039 37 1 7.1112 -0.8050 -1.6463 38 1 8.4599 0.0807 -2.3980 39 1 7.9565 -2.8204 -4.6101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835408255.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:38 Heat of formation + Delta-G solvation = -117.176903 kcal Electronic energy + Delta-G solvation = -25911.528002 eV Core-core repulsion = 21946.964299 eV Total energy + Delta-G solvation = -3964.563703 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 4.48 seconds Orbital eigenvalues (eV) -41.15020 -39.13483 -38.51453 -36.12594 -35.06855 -34.29055 -33.92255 -33.28571 -32.48080 -30.75746 -28.98080 -26.97881 -25.25452 -23.49667 -23.30747 -22.04701 -21.22164 -19.12565 -18.60990 -18.05710 -17.31497 -16.93400 -16.62967 -16.24754 -15.65798 -15.61319 -15.01014 -14.84938 -14.59398 -14.30836 -14.21590 -14.04630 -13.92876 -13.37373 -12.99117 -12.47145 -12.34756 -12.29525 -12.07714 -11.86010 -11.80428 -11.40603 -11.23976 -11.19832 -11.09499 -10.89518 -10.83628 -10.60135 -10.35630 -10.32601 -10.12500 -9.85280 -9.71333 -9.07624 -8.69900 -8.64191 -6.26673 -4.37531 0.39878 0.95772 1.14219 2.58465 2.80045 3.22358 3.29029 3.30711 3.35841 3.63784 3.91577 4.23603 4.28969 4.34375 4.59220 4.62417 4.65170 4.71299 4.82891 4.91775 5.04310 5.08432 5.12606 5.18239 5.27497 5.37574 5.45650 5.62191 5.64064 5.76071 5.87027 5.98566 6.11679 6.68272 6.85671 6.98915 7.12749 7.48151 7.51698 7.80231 7.90871 8.63381 9.29091 10.85172 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.004031 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.370208 B = 6945.077462 C = 8501.523426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.051 3.949 4 O -0.269 6.269 5 C 0.147 3.853 6 C -0.177 4.177 7 C -0.104 4.104 8 C 0.057 3.943 9 N -0.415 5.415 10 C 0.040 3.960 11 C 0.593 3.407 12 O -0.461 6.461 13 N -1.047 6.047 14 S 2.555 3.445 15 O -0.968 6.968 16 O -0.953 6.953 17 C -0.405 4.405 18 C -0.534 4.534 19 H 0.070 0.930 20 C 0.078 3.922 21 N -0.878 5.878 22 Si 0.906 3.094 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.269 1.269 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.431 0.569 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.429 15.722 5.322 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.024 4.024 4 O -0.178 6.178 5 C 0.096 3.904 6 C -0.204 4.204 7 C -0.124 4.124 8 C -0.105 4.105 9 N -0.126 5.126 10 C -0.100 4.100 11 C 0.377 3.623 12 O -0.330 6.330 13 N -0.807 5.807 14 S 2.657 3.343 15 O -0.958 6.958 16 O -0.943 6.943 17 C -0.542 4.542 18 C -0.574 4.574 19 H 0.088 0.912 20 C -0.129 4.129 21 N -0.513 5.513 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.194 1.194 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.185 0.815 36 H 0.267 0.733 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.385 14.383 5.911 21.184 hybrid contribution -0.796 0.134 -0.748 1.100 sum -15.181 14.517 5.163 21.630 Atomic orbital electron populations 1.21685 0.94296 1.02678 1.01819 1.21494 0.95644 0.94365 1.04888 1.23077 0.78249 0.99878 1.01222 1.86441 1.21194 1.24417 1.85785 1.20025 0.92152 0.85952 0.92279 1.21767 1.01153 0.91728 1.05737 1.22233 0.95781 0.98416 0.95937 1.22716 0.91378 0.96296 1.00081 1.67555 1.39999 0.97358 1.07738 1.20549 0.88515 0.92812 1.08159 1.17450 0.81591 0.88138 0.75127 1.91041 1.70916 1.27059 1.43935 1.55271 1.16094 1.29179 1.80197 1.07079 0.73330 0.73177 0.80669 1.93517 1.33833 1.79620 1.88863 1.93526 1.78953 1.68638 1.53197 1.27608 1.08211 1.07219 1.11115 1.20260 1.27738 1.04260 1.05102 0.91162 1.24914 0.94824 0.98304 0.94847 1.69956 1.35997 1.38527 1.06864 0.86407 0.80436 0.82181 0.77782 1.19367 1.20718 1.19405 0.92585 0.92496 0.91557 0.90085 0.90257 0.91875 0.91765 0.83518 0.83831 0.81547 0.73331 0.88291 0.89635 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -1.25 6.30 -26.73 -0.17 -1.42 16 3 C 0.05 0.50 4.76 37.16 0.18 0.68 16 4 O -0.27 -3.97 8.20 -40.59 -0.33 -4.30 16 5 C 0.15 2.01 6.71 -38.55 -0.26 1.75 16 6 C -0.18 -1.62 9.13 -39.14 -0.36 -1.98 16 7 C -0.10 -0.77 10.10 -39.36 -0.40 -1.17 16 8 C 0.06 0.52 11.17 -17.55 -0.20 0.33 16 9 N -0.41 -5.51 9.54 -9.71 -0.09 -5.60 16 10 C 0.04 0.63 6.76 -82.88 -0.56 0.07 16 11 C 0.59 11.56 7.54 -12.34 -0.09 11.46 16 12 O -0.46 -10.45 13.24 -24.08 -0.32 -10.77 16 13 N -1.05 -19.85 5.59 30.52 0.17 -19.68 16 14 S 2.56 59.60 5.03 -107.50 -0.54 59.06 16 15 O -0.97 -23.51 18.08 -57.54 -1.04 -24.55 16 16 O -0.95 -24.96 17.04 -64.78 -1.10 -26.06 16 17 C -0.40 -10.57 5.64 36.00 0.20 -10.37 16 18 C -0.53 -15.43 9.13 -34.44 -0.31 -15.75 16 19 H 0.07 1.97 7.71 -52.49 -0.40 1.57 16 20 C 0.08 2.21 5.46 -17.82 -0.10 2.12 16 21 N -0.88 -25.67 13.29 55.43 0.74 -24.93 16 22 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.48 7.68 -51.93 -0.40 0.08 16 32 H 0.06 0.51 7.71 -51.93 -0.40 0.11 16 33 H 0.15 0.90 6.46 -52.49 -0.34 0.56 16 34 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.43 6.78 8.11 -34.46 -0.28 6.50 16 37 H 0.10 2.70 7.19 -51.92 -0.37 2.32 16 38 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 351.61 15.07 5.30 5.30 Total: -1.00 -37.80 351.61 -8.65 -46.45 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.71 Total: 3.49 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -1.70 Total: -14.95 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.81 Total: -50.21 kcal Atomic # 8 Polarization: -62.88 SS G_CDS: -2.80 Total: -65.68 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 59.60 SS G_CDS: -0.54 Total: 59.06 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.80 -8.65 -46.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835408255.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.730 kcal (2) G-P(sol) polarization free energy of solvation -37.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.48 seconds