Wall clock time and date at job start Tue Mar 31 2020 14:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99853 * 2 1 4 4 H 1.48496 * 109.47497 * 270.00178 * 3 2 1 5 5 H 1.48506 * 109.47040 * 30.00377 * 3 2 1 6 6 H 1.48502 * 109.46980 * 149.99926 * 3 2 1 7 7 C 1.37877 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99723 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00057 * 179.97438 * 7 2 1 10 10 S 1.81398 * 109.47229 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.54236 * 68.37858 * 10 9 7 12 12 O 1.42101 * 110.54458 * 291.62886 * 10 9 7 13 13 N 1.65596 * 104.44847 * 180.02562 * 10 9 7 14 14 C 1.34776 * 120.00569 * 64.99991 * 13 10 9 15 15 O 1.21495 * 119.99465 * 0.02562 * 14 13 10 16 16 C 1.48326 * 120.00481 * 179.97438 * 14 13 10 17 17 N 1.31346 * 127.13005 * 359.96295 * 16 14 13 18 18 O 1.21242 * 111.48339 * 179.97438 * 17 16 14 19 19 C 1.33638 * 111.64423 * 359.62223 * 18 17 16 20 20 C 1.34985 * 106.59827 * 0.67760 * 19 18 17 21 21 C 1.50083 * 126.60301 * 179.22838 * 20 19 18 22 22 C 1.53336 * 109.02954 * 27.93270 * 21 20 19 23 23 C 1.52545 * 109.60095 * 271.60618 * 22 21 20 24 24 C 1.52623 * 110.98589 * 61.28735 * 23 22 21 25 25 C 1.50609 * 127.99898 * 181.60897 * 19 18 17 26 26 H 0.96994 * 120.00312 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46682 * 60.00125 * 9 7 2 28 28 H 1.08998 * 109.47106 * 300.00678 * 9 7 2 29 29 H 0.97002 * 119.99756 * 245.00148 * 13 10 9 30 30 H 1.09002 * 109.56062 * 147.82676 * 21 20 19 31 31 H 1.08997 * 109.56053 * 268.04050 * 21 20 19 32 32 H 1.08992 * 109.46126 * 31.54489 * 22 21 20 33 33 H 1.09007 * 109.45601 * 151.50330 * 22 21 20 34 34 H 1.08994 * 109.11016 * 300.92622 * 23 22 21 35 35 H 1.08998 * 109.19958 * 181.70186 * 23 22 21 36 36 H 1.09002 * 109.40624 * 273.57954 * 24 23 22 37 37 H 1.09003 * 109.34035 * 153.78721 * 24 23 22 38 38 H 1.08997 * 109.53217 * 345.80267 * 25 19 18 39 39 H 1.08994 * 109.53287 * 105.96011 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 16 4.1162 -2.9043 -0.0010 11 8 3.8197 -3.5381 -1.2377 12 8 3.8205 -3.5377 1.2362 13 7 5.7658 -2.7593 -0.0009 14 6 6.3940 -2.2089 1.0568 15 8 5.7500 -1.8194 2.0106 16 6 7.8716 -2.0795 1.0571 17 7 8.7003 -2.4521 0.1086 18 8 9.8512 -2.2119 0.4048 19 6 9.9403 -1.6314 1.6052 20 6 8.6804 -1.5303 2.0792 21 6 8.2657 -0.9586 3.4034 22 6 9.2963 0.0892 3.8405 23 6 10.4126 -0.5887 4.6287 24 6 11.1390 -1.6206 3.7703 25 6 11.1797 -1.1502 2.3127 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6804 0.8889 28 1 3.8745 -0.6800 -0.8910 29 1 6.2801 -3.0706 -0.7623 30 1 7.2864 -0.4896 3.3078 31 1 8.2177 -1.7552 4.1459 32 1 9.7183 0.5730 2.9597 33 1 8.8104 0.8369 4.4675 34 1 9.9841 -1.0849 5.4994 35 1 11.1253 0.1657 4.9619 36 1 10.6142 -2.5742 3.8285 37 1 12.1572 -1.7446 4.1392 38 1 12.0621 -1.5606 1.8218 39 1 11.2181 -0.0614 2.2808 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835408290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:19 Heat of formation + Delta-G solvation = -58.528415 kcal Electronic energy + Delta-G solvation = -26302.882736 eV Core-core repulsion = 22340.862223 eV Total energy + Delta-G solvation = -3962.020513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.40849 -39.94683 -38.52350 -36.44263 -35.36763 -34.63187 -34.15722 -33.29236 -32.28999 -31.50641 -29.86592 -26.73410 -25.29647 -25.17947 -23.11370 -21.75182 -20.81148 -20.12722 -19.38968 -18.24797 -18.04667 -17.61516 -17.03270 -16.59279 -15.97205 -15.86147 -15.23560 -14.98468 -14.86035 -14.69167 -14.22915 -14.04391 -13.76788 -13.72225 -12.82477 -12.75688 -12.60757 -12.36996 -12.31668 -12.10810 -11.71002 -11.60749 -11.47909 -11.38241 -11.30771 -11.02087 -10.90488 -10.86433 -10.80182 -10.56064 -10.51030 -10.29383 -9.92332 -9.47964 -9.39447 -8.85846 -6.34422 -4.44265 0.71040 0.79932 1.33523 2.56863 2.71261 2.88020 3.13643 3.22071 3.23581 3.54266 4.00894 4.20254 4.29923 4.35412 4.39362 4.48873 4.54516 4.64524 4.78832 4.86013 4.95540 4.96484 5.05640 5.08519 5.25844 5.32892 5.38838 5.46975 5.55084 5.67078 5.79212 5.83237 5.93372 6.10075 6.12231 6.23601 6.68181 7.11649 7.32194 7.73405 7.96653 8.55428 9.19853 10.76397 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.003817 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.981418 B = 7333.780718 C = 8242.442948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.092 3.908 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.088 0.912 9 C -0.457 4.457 10 S 2.576 3.424 11 O -0.953 6.953 12 O -0.939 6.939 13 N -1.051 6.051 14 C 0.624 3.376 15 O -0.466 6.466 16 C -0.026 4.026 17 N -0.327 5.327 18 O 0.132 5.868 19 C -0.036 4.036 20 C -0.140 4.140 21 C -0.054 4.054 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.037 4.037 26 H 0.273 0.727 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.431 0.569 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.748 1.121 6.241 27.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.115 4.115 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.106 0.894 9 C -0.593 4.593 10 S 2.677 3.323 11 O -0.944 6.944 12 O -0.929 6.929 13 N -0.811 5.811 14 C 0.407 3.593 15 O -0.334 6.334 16 C -0.185 4.185 17 N -0.027 5.027 18 O 0.055 5.945 19 C -0.100 4.100 20 C -0.145 4.145 21 C -0.092 4.092 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.075 4.075 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.267 0.733 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 25.393 0.067 5.779 26.042 hybrid contribution 0.602 1.515 0.019 1.630 sum 25.994 1.582 5.797 26.680 Atomic orbital electron populations 1.69855 1.06242 1.27917 1.47269 1.24839 0.94743 0.99112 0.92837 0.86745 0.80639 0.82952 0.79039 1.19542 1.20377 1.18599 1.20012 0.84549 0.96490 1.56241 0.89388 1.28102 1.08749 1.15939 1.06496 1.06484 0.71158 0.80327 0.74379 1.93558 1.80725 1.74930 1.45173 1.93559 1.80602 1.74146 1.44639 1.55518 1.31578 1.67766 1.26212 1.16681 0.84788 0.76007 0.81823 1.90989 1.65364 1.44694 1.32344 1.23039 0.95930 1.05805 0.93763 1.74407 0.89574 1.17068 1.21643 1.84758 1.22288 1.56556 1.30907 1.24134 0.98145 1.00835 0.86861 1.20720 0.90808 1.03749 0.99247 1.20110 1.00377 0.98460 0.90209 1.21728 0.96055 0.97883 1.00598 1.21546 0.97659 0.98310 0.98599 1.21600 1.01602 0.99782 0.92556 1.20288 0.91081 1.01882 0.94268 0.91729 0.88419 0.89976 0.73343 0.88579 0.89496 0.91226 0.90724 0.91309 0.91588 0.91154 0.90343 0.89159 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.24 13.96 55.43 0.77 -25.47 16 2 C 0.09 2.62 5.47 -17.82 -0.10 2.53 16 3 Si 0.88 20.81 27.47 -169.99 -4.67 16.15 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.53 -15.21 9.68 -34.44 -0.33 -15.54 16 8 H 0.09 2.68 7.96 -52.49 -0.42 2.26 16 9 C -0.46 -10.74 4.71 36.00 0.17 -10.58 16 10 S 2.58 55.77 5.03 -107.50 -0.54 55.23 16 11 O -0.95 -21.95 18.08 -57.54 -1.04 -22.99 16 12 O -0.94 -23.15 17.03 -64.80 -1.10 -24.25 16 13 N -1.05 -17.84 5.60 30.64 0.17 -17.67 16 14 C 0.62 10.74 7.59 -12.11 -0.09 10.64 16 15 O -0.47 -9.15 13.59 -11.78 -0.16 -9.31 16 16 C -0.03 -0.37 7.19 -82.71 -0.60 -0.96 16 17 N -0.33 -4.30 11.88 33.31 0.40 -3.91 16 18 O 0.13 1.43 11.18 18.13 0.20 1.63 16 19 C -0.04 -0.33 6.64 -35.51 -0.24 -0.57 16 20 C -0.14 -1.63 5.73 -104.86 -0.60 -2.23 16 21 C -0.05 -0.56 5.37 -28.01 -0.15 -0.71 16 22 C -0.13 -0.89 5.55 -26.79 -0.15 -1.03 16 23 C -0.12 -0.64 5.63 -27.16 -0.15 -0.79 16 24 C -0.12 -0.57 5.63 -26.81 -0.15 -0.72 16 25 C -0.04 -0.19 5.55 -27.81 -0.15 -0.35 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.10 2.25 6.25 -51.92 -0.32 1.93 16 28 H 0.08 1.72 7.57 -51.93 -0.39 1.33 16 29 H 0.43 5.96 8.56 -34.47 -0.30 5.67 16 30 H 0.10 1.19 7.07 -51.93 -0.37 0.82 16 31 H 0.09 0.85 7.83 -51.93 -0.41 0.45 16 32 H 0.07 0.47 5.69 -51.93 -0.30 0.17 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.10 0.42 6.38 -51.93 -0.33 0.09 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -35.74 333.38 -8.00 -43.74 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.51 Total: 2.15 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.54 Total: -20.32 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 1.34 Total: -47.05 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -2.10 Total: -54.93 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: 55.77 SS G_CDS: -0.54 Total: 55.23 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.74 -8.00 -43.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835408290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.788 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds