Wall clock time and date at job start Tue Mar 31 2020 14:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99853 * 2 1 4 4 H 1.48496 * 109.47497 * 270.00178 * 3 2 1 5 5 H 1.48506 * 109.47040 * 30.00377 * 3 2 1 6 6 H 1.48502 * 109.46980 * 149.99926 * 3 2 1 7 7 C 1.37877 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99723 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00057 * 179.97438 * 7 2 1 10 10 S 1.81398 * 109.47229 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.54236 * 68.37858 * 10 9 7 12 12 O 1.42101 * 110.54458 * 291.62886 * 10 9 7 13 13 N 1.65596 * 104.44847 * 180.02562 * 10 9 7 14 14 C 1.34776 * 120.00569 * 64.99991 * 13 10 9 15 15 O 1.21495 * 119.99465 * 0.02562 * 14 13 10 16 16 C 1.48326 * 120.00481 * 179.97438 * 14 13 10 17 17 N 1.31346 * 127.13005 * 359.96295 * 16 14 13 18 18 O 1.21242 * 111.48339 * 179.97438 * 17 16 14 19 19 C 1.33638 * 111.64423 * 359.62223 * 18 17 16 20 20 C 1.34985 * 106.59827 * 0.67760 * 19 18 17 21 21 C 1.50083 * 126.60301 * 179.22838 * 20 19 18 22 22 C 1.53336 * 109.02954 * 27.93270 * 21 20 19 23 23 C 1.52545 * 109.60095 * 271.60618 * 22 21 20 24 24 C 1.52623 * 110.98589 * 61.28735 * 23 22 21 25 25 C 1.50609 * 127.99898 * 181.60897 * 19 18 17 26 26 H 0.96994 * 120.00312 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46682 * 60.00125 * 9 7 2 28 28 H 1.08998 * 109.47106 * 300.00678 * 9 7 2 29 29 H 0.97002 * 119.99756 * 245.00148 * 13 10 9 30 30 H 1.09002 * 109.56062 * 147.82676 * 21 20 19 31 31 H 1.08997 * 109.56053 * 268.04050 * 21 20 19 32 32 H 1.08992 * 109.46126 * 31.54489 * 22 21 20 33 33 H 1.09007 * 109.45601 * 151.50330 * 22 21 20 34 34 H 1.08994 * 109.11016 * 300.92622 * 23 22 21 35 35 H 1.08998 * 109.19958 * 181.70186 * 23 22 21 36 36 H 1.09002 * 109.40624 * 273.57954 * 24 23 22 37 37 H 1.09003 * 109.34035 * 153.78721 * 24 23 22 38 38 H 1.08997 * 109.53217 * 345.80267 * 25 19 18 39 39 H 1.08994 * 109.53287 * 105.96011 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 16 4.1162 -2.9043 -0.0010 11 8 3.8197 -3.5381 -1.2377 12 8 3.8205 -3.5377 1.2362 13 7 5.7658 -2.7593 -0.0009 14 6 6.3940 -2.2089 1.0568 15 8 5.7500 -1.8194 2.0106 16 6 7.8716 -2.0795 1.0571 17 7 8.7003 -2.4521 0.1086 18 8 9.8512 -2.2119 0.4048 19 6 9.9403 -1.6314 1.6052 20 6 8.6804 -1.5303 2.0792 21 6 8.2657 -0.9586 3.4034 22 6 9.2963 0.0892 3.8405 23 6 10.4126 -0.5887 4.6287 24 6 11.1390 -1.6206 3.7703 25 6 11.1797 -1.1502 2.3127 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6804 0.8889 28 1 3.8745 -0.6800 -0.8910 29 1 6.2801 -3.0706 -0.7623 30 1 7.2864 -0.4896 3.3078 31 1 8.2177 -1.7552 4.1459 32 1 9.7183 0.5730 2.9597 33 1 8.8104 0.8369 4.4675 34 1 9.9841 -1.0849 5.4994 35 1 11.1253 0.1657 4.9619 36 1 10.6142 -2.5742 3.8285 37 1 12.1572 -1.7446 4.1392 38 1 12.0621 -1.5606 1.8218 39 1 11.2181 -0.0614 2.2808 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835408290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:19 Heat of formation + Delta-G solvation = -85.799249 kcal Electronic energy + Delta-G solvation = -26304.065288 eV Core-core repulsion = 22340.862223 eV Total energy + Delta-G solvation = -3963.203065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.35597 -41.35828 -39.10500 -38.30900 -37.24859 -36.01734 -35.41771 -35.14403 -32.97761 -32.20647 -31.92610 -27.50709 -26.32384 -25.82359 -25.19042 -22.83220 -21.83357 -21.02248 -20.58519 -19.74766 -19.18213 -19.01813 -18.41661 -18.04251 -17.74594 -16.79804 -16.50197 -16.36851 -16.19033 -16.03470 -15.72050 -14.78804 -14.75813 -14.47567 -14.41987 -14.27845 -13.91056 -13.70668 -13.42425 -13.38328 -13.29195 -13.04359 -12.89336 -12.70629 -12.50039 -12.26639 -12.19022 -11.94673 -11.91922 -11.79673 -11.54402 -11.46804 -11.39769 -11.20994 -10.99189 -10.15919 -8.51266 -6.69093 -1.03375 -0.33338 0.47336 1.25471 1.27821 1.32500 1.42763 1.52344 1.82911 2.21869 2.34806 2.57243 2.78309 3.02599 3.23464 3.53858 3.60857 3.83169 3.94198 3.97873 4.14150 4.22182 4.26093 4.35498 4.36421 4.44404 4.72654 4.78878 4.89906 4.95651 5.06323 5.08110 5.18155 5.29667 5.33224 5.36610 5.45368 5.54927 5.74698 5.98594 6.33960 6.82248 6.99573 8.63783 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.003817 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.981418 B = 7333.780718 C = 8242.442948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.032 3.968 3 Si 0.947 3.053 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.244 1.244 7 C -0.558 4.558 8 H 0.047 0.953 9 C -0.467 4.467 10 S 2.607 3.393 11 O -0.969 6.969 12 O -0.974 6.974 13 N -1.037 6.037 14 C 0.623 3.377 15 O -0.495 6.495 16 C -0.053 4.053 17 N -0.337 5.337 18 O 0.149 5.851 19 C -0.011 4.011 20 C -0.157 4.157 21 C -0.056 4.056 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.037 4.037 26 H 0.279 0.721 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.446 0.554 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.186 2.946 6.392 31.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.171 4.171 3 Si 0.767 3.233 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.167 1.167 7 C -0.597 4.597 8 H 0.065 0.935 9 C -0.602 4.602 10 S 2.706 3.294 11 O -0.960 6.960 12 O -0.964 6.964 13 N -0.801 5.801 14 C 0.408 3.592 15 O -0.365 6.365 16 C -0.211 4.211 17 N -0.035 5.035 18 O 0.068 5.932 19 C -0.075 4.075 20 C -0.163 4.163 21 C -0.093 4.093 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.075 4.075 26 H 0.089 0.911 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.285 0.715 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.136 0.864 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 29.809 1.865 5.901 30.444 hybrid contribution -0.700 0.853 -0.011 1.104 sum 29.108 2.718 5.889 29.822 Atomic orbital electron populations 1.69987 1.08270 1.29500 1.48448 1.25922 0.95709 1.03505 0.91953 0.85712 0.79800 0.77395 0.80421 1.17361 1.19520 1.16715 1.20241 0.87301 0.95402 1.56763 0.93491 1.28115 1.05729 1.18168 1.08164 1.05282 0.71798 0.79091 0.73195 1.93527 1.81862 1.74978 1.45636 1.93510 1.82057 1.74636 1.46224 1.54983 1.29956 1.67969 1.27198 1.17072 0.86167 0.74978 0.80957 1.90972 1.66327 1.45938 1.33266 1.22748 0.94290 1.08321 0.95715 1.74403 0.90135 1.17279 1.21642 1.84740 1.21130 1.55764 1.31561 1.24852 0.98794 0.98360 0.85464 1.20933 0.91422 1.04503 0.99410 1.20132 1.00201 0.99149 0.89840 1.21731 0.95829 0.97006 1.01224 1.21544 0.97317 0.98831 0.98181 1.21626 1.02796 0.98716 0.92248 1.20624 0.89793 1.03083 0.93980 0.91136 0.87675 0.86839 0.71471 0.91380 0.89807 0.90386 0.90556 0.91788 0.89501 0.92786 0.87739 0.86444 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.96 21.45 0.30 -56.68 16 2 C 0.03 1.84 5.47 84.65 0.46 2.30 16 3 Si 0.95 42.20 27.47 68.60 1.88 44.09 16 4 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 7 C -0.56 -32.84 9.68 25.60 0.25 -32.59 16 8 H 0.05 3.04 7.96 -2.91 -0.02 3.02 16 9 C -0.47 -22.02 4.71 71.24 0.34 -21.68 16 10 S 2.61 115.01 5.03 -56.49 -0.28 114.73 16 11 O -0.97 -45.30 18.08 -127.65 -2.31 -47.60 16 12 O -0.97 -49.70 17.03 -120.71 -2.06 -51.76 16 13 N -1.04 -35.08 5.60 -175.27 -0.98 -36.06 16 14 C 0.62 21.49 7.59 86.93 0.66 22.15 16 15 O -0.49 -19.87 13.59 12.70 0.17 -19.70 16 16 C -0.05 -1.48 7.19 42.69 0.31 -1.18 16 17 N -0.34 -8.33 11.88 -49.01 -0.58 -8.91 16 18 O 0.15 2.82 11.18 74.95 0.84 3.66 16 19 C -0.01 -0.17 6.64 24.91 0.17 0.00 16 20 C -0.16 -3.44 5.73 -20.02 -0.11 -3.56 16 21 C -0.06 -1.12 5.37 29.77 0.16 -0.96 16 22 C -0.12 -1.43 5.55 30.56 0.17 -1.26 16 23 C -0.12 -0.86 5.63 30.32 0.17 -0.69 16 24 C -0.12 -0.67 5.63 30.54 0.17 -0.50 16 25 C -0.04 -0.21 5.55 29.89 0.17 -0.05 16 26 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.11 4.82 6.25 -2.39 -0.01 4.81 16 28 H 0.11 4.60 7.57 -2.39 -0.02 4.59 16 29 H 0.45 12.08 8.56 -96.75 -0.83 11.25 16 30 H 0.07 1.73 7.07 -2.39 -0.02 1.72 16 31 H 0.08 1.66 7.83 -2.39 -0.02 1.64 16 32 H 0.08 0.79 5.69 -2.39 -0.01 0.77 16 33 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.06 0.54 8.09 -2.39 -0.02 0.52 16 35 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.05 0.52 7.79 -2.39 -0.02 0.50 16 37 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.12 0.35 6.38 -2.39 -0.02 0.34 16 Total: -1.00 -80.87 333.38 0.11 -80.75 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.23 Total: 15.49 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 2.90 Total: -37.99 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -1.26 Total: -101.66 kcal Atomic # 8 Polarization: -112.05 SS G_CDS: -3.35 Total: -115.40 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.09 kcal Atomic # 16 Polarization: 115.01 SS G_CDS: -0.28 Total: 114.73 kcal Total: -80.87 0.11 -80.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835408290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.046 kcal (2) G-P(sol) polarization free energy of solvation -80.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds