Wall clock time and date at job start Tue Mar 31 2020 16:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47293 * 2 1 4 4 O 1.42905 * 109.46996 * 119.99600 * 2 1 3 5 5 C 1.35682 * 117.00042 * 90.00232 * 4 2 1 6 6 C 1.38894 * 119.62679 * 179.97438 * 5 4 2 7 7 C 1.39570 * 118.95045 * 179.97438 * 6 5 4 8 8 C 1.48156 * 120.89500 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00027 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00345 * 180.02562 * 8 7 6 11 11 S 1.65604 * 120.00201 * 180.02562 * 10 8 7 12 12 O 1.42105 * 104.27618 * 181.07018 * 11 10 8 13 13 O 1.42094 * 104.27728 * 308.92776 * 11 10 8 14 14 C 1.81404 * 104.44848 * 64.99946 * 11 10 8 15 15 C 1.50700 * 109.47098 * 180.02562 * 14 11 10 16 16 H 1.08001 * 119.99568 * 359.97438 * 15 14 11 17 17 C 1.37870 * 119.99929 * 180.02562 * 15 14 11 18 18 N 1.31518 * 120.00252 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00068 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46752 * 59.99501 * 19 17 15 21 21 H 1.48499 * 109.47116 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47032 * 300.00109 * 19 17 15 23 23 C 1.39966 * 118.21440 * 0.02562 * 7 6 5 24 24 C 1.37978 * 119.13523 * 359.97438 * 23 7 6 25 25 N 1.31911 * 120.97769 * 359.74642 * 24 23 7 26 26 H 1.09008 * 109.47142 * 299.99897 * 1 2 3 27 27 H 1.08992 * 109.47123 * 59.99863 * 1 2 3 28 28 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46955 * 239.99484 * 2 1 3 30 30 H 1.08999 * 109.47130 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46694 * 299.99854 * 3 2 1 32 32 H 1.08996 * 109.46889 * 59.99514 * 3 2 1 33 33 H 1.07999 * 120.52431 * 359.97438 * 6 5 4 34 34 H 0.97006 * 120.00327 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.46954 * 299.99799 * 14 11 10 36 36 H 1.09000 * 109.46843 * 60.00076 * 14 11 10 37 37 H 0.97000 * 119.99863 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.43205 * 179.97438 * 23 7 6 39 39 H 1.07998 * 119.50996 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2117 -2.0109 1.0654 6 6 2.6747 -2.7200 2.1664 7 6 2.8805 -4.0952 2.0465 8 6 3.3738 -4.8934 3.1931 9 8 3.6045 -4.3517 4.2560 10 7 3.5667 -6.2203 3.0572 11 16 4.1175 -7.1125 4.3389 12 8 4.2215 -8.4341 3.8271 13 8 5.2671 -6.4083 4.7879 14 6 2.7871 -7.0087 5.5677 15 6 3.1754 -7.7909 6.7959 16 1 4.1272 -8.2999 6.8333 17 6 2.3152 -7.8575 7.8713 18 7 1.1560 -7.2380 7.8255 19 14 2.7963 -8.8277 9.3934 20 1 4.0443 -8.2626 9.9666 21 1 1.7072 -8.7425 10.3993 22 1 3.0201 -10.2486 9.0245 23 6 2.6094 -4.6998 0.8137 24 6 2.1518 -3.9219 -0.2300 25 7 1.9637 -2.6251 -0.0784 26 1 -0.3634 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 2.8723 -2.2151 3.1005 34 1 3.3822 -6.6529 2.2087 35 1 2.6232 -5.9656 5.8385 36 1 1.8709 -7.4232 5.1471 37 1 0.5510 -7.2846 8.5823 38 1 2.7564 -5.7615 0.6810 39 1 1.9403 -4.3822 -1.1837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835410945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:31 Heat of formation + Delta-G solvation = -115.028167 kcal Electronic energy + Delta-G solvation = -25316.122416 eV Core-core repulsion = 21351.651890 eV Total energy + Delta-G solvation = -3964.470526 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.16040 -39.80473 -38.27182 -36.31840 -35.25582 -34.46678 -33.56643 -33.38198 -32.73075 -30.39436 -29.09816 -27.58503 -25.60324 -23.67684 -23.56056 -22.55253 -20.92427 -19.49590 -19.05846 -17.58175 -17.41776 -16.64757 -16.26142 -16.07335 -15.99713 -15.75248 -15.02239 -14.94176 -14.73968 -14.60042 -14.26823 -14.16898 -14.06003 -13.43419 -12.67745 -12.63163 -12.56473 -12.28866 -12.24380 -12.22036 -12.00106 -11.50874 -11.36700 -11.28077 -11.26784 -11.11240 -10.90591 -10.73888 -10.60344 -10.46756 -10.20281 -9.92553 -9.84532 -9.22975 -8.80860 -8.72391 -6.35132 -4.46957 0.38052 0.85727 0.93296 2.51382 2.62838 3.07526 3.23499 3.26016 3.30500 3.53589 3.92505 4.06684 4.22939 4.48655 4.53725 4.60542 4.65221 4.69589 4.76216 4.93067 4.94963 5.06306 5.12316 5.22383 5.35207 5.42527 5.44512 5.47524 5.52137 5.76441 5.78521 5.87229 6.05235 6.51983 6.70046 6.86598 6.98451 7.38132 7.48827 7.53267 7.71286 8.53928 9.20761 10.76544 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002820 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.987988 B = 9926.406872 C =10662.574696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 C -0.152 4.152 4 O -0.298 6.298 5 C 0.323 3.677 6 C -0.128 4.128 7 C -0.053 4.053 8 C 0.580 3.420 9 O -0.469 6.469 10 N -1.053 6.053 11 S 2.552 3.448 12 O -0.964 6.964 13 O -0.949 6.949 14 C -0.402 4.402 15 C -0.536 4.536 16 H 0.071 0.929 17 C 0.078 3.922 18 N -0.877 5.877 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.179 4.179 24 C 0.139 3.861 25 N -0.526 5.526 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.159 0.841 34 H 0.424 0.576 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.270 0.730 38 H 0.146 0.854 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 11.675 -19.236 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.025 3.975 3 C -0.209 4.209 4 O -0.205 6.205 5 C 0.144 3.856 6 C -0.150 4.150 7 C -0.065 4.065 8 C 0.365 3.635 9 O -0.339 6.339 10 N -0.813 5.813 11 S 2.655 3.345 12 O -0.955 6.955 13 O -0.939 6.939 14 C -0.539 4.539 15 C -0.576 4.576 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.512 5.512 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.194 1.194 23 C -0.200 4.200 24 C -0.017 4.017 25 N -0.250 5.250 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.177 0.823 34 H 0.259 0.741 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.163 0.837 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.829 12.400 -18.844 22.632 hybrid contribution -0.382 -1.031 0.856 1.393 sum -2.211 11.369 -17.988 21.394 Atomic orbital electron populations 1.22226 0.94761 1.03008 1.02685 1.22382 0.94494 0.92831 0.87794 1.21917 1.02084 0.93810 1.03066 1.86339 1.79946 1.15478 1.38723 1.19608 0.91708 0.84973 0.89314 1.21220 1.01349 0.92635 0.99776 1.20082 0.98728 0.93540 0.94147 1.17932 0.76177 0.81447 0.87947 1.91008 1.45811 1.70050 1.27052 1.55480 1.75586 1.17813 1.32409 1.07265 0.79032 0.72983 0.75260 1.93530 1.87465 1.35880 1.78654 1.93539 1.47318 1.72868 1.80197 1.27596 1.09783 1.07855 1.08663 1.20235 1.05014 1.33754 0.98592 0.91104 1.24919 0.94385 0.94874 0.98699 1.69945 1.08510 1.40935 1.31853 0.86390 0.78669 0.80473 0.81187 1.19331 1.20658 1.19383 1.22198 1.02725 1.02026 0.93035 1.22364 0.93105 0.87429 0.98775 1.67140 1.20371 1.12930 1.24568 0.91838 0.91082 0.91907 0.89210 0.91739 0.90471 0.91481 0.82330 0.74073 0.88310 0.89562 0.92035 0.83672 0.81485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.53 37.16 0.35 -0.97 16 2 C 0.08 0.71 3.10 -26.73 -0.08 0.63 16 3 C -0.15 -1.02 9.56 37.16 0.36 -0.67 16 4 O -0.30 -3.46 9.76 -18.75 -0.18 -3.64 16 5 C 0.32 3.92 7.45 -17.16 -0.13 3.79 16 6 C -0.13 -1.68 9.61 -38.84 -0.37 -2.06 16 7 C -0.05 -0.68 5.91 -104.68 -0.62 -1.30 16 8 C 0.58 9.56 7.54 -12.19 -0.09 9.47 16 9 O -0.47 -9.61 14.54 -11.78 -0.17 -9.78 16 10 N -1.05 -16.39 5.56 30.60 0.17 -16.22 16 11 S 2.55 53.79 5.03 -107.50 -0.54 53.25 16 12 O -0.96 -21.29 18.08 -57.54 -1.04 -22.33 16 13 O -0.95 -23.12 17.04 -64.79 -1.10 -24.22 16 14 C -0.40 -9.82 5.64 36.01 0.20 -9.62 16 15 C -0.54 -14.85 9.13 -34.44 -0.31 -15.17 16 16 H 0.07 1.90 7.71 -52.49 -0.40 1.50 16 17 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 18 N -0.88 -24.93 13.29 55.43 0.74 -24.20 16 19 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.18 -1.70 9.61 -39.03 -0.38 -2.07 16 24 C 0.14 1.20 11.17 -17.61 -0.20 1.00 16 25 N -0.53 -5.64 8.62 -13.38 -0.12 -5.75 16 26 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.80 6.98 -51.93 -0.36 0.43 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.16 2.13 7.74 -52.49 -0.41 1.72 16 34 H 0.42 4.64 6.93 -34.47 -0.24 4.40 16 35 H 0.10 2.53 7.19 -51.92 -0.37 2.15 16 36 H 0.09 2.02 8.14 -51.92 -0.42 1.60 16 37 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.15 0.93 6.53 -52.49 -0.34 0.59 16 39 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -35.97 352.93 -7.96 -43.93 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.65 Total: 2.56 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -1.37 Total: -14.90 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.79 Total: -46.17 kcal Atomic # 8 Polarization: -57.47 SS G_CDS: -2.50 Total: -59.97 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 53.79 SS G_CDS: -0.54 Total: 53.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.97 -7.96 -43.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.099 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds