Wall clock time and date at job start Tue Mar 31 2020 16:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47293 * 2 1 4 4 O 1.42905 * 109.46996 * 119.99600 * 2 1 3 5 5 C 1.35682 * 117.00042 * 90.00232 * 4 2 1 6 6 C 1.38894 * 119.62679 * 179.97438 * 5 4 2 7 7 C 1.39570 * 118.95045 * 179.97438 * 6 5 4 8 8 C 1.48156 * 120.89500 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00027 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00345 * 180.02562 * 8 7 6 11 11 S 1.65604 * 120.00201 * 180.02562 * 10 8 7 12 12 O 1.42105 * 104.27618 * 181.07018 * 11 10 8 13 13 O 1.42094 * 104.27728 * 308.92776 * 11 10 8 14 14 C 1.81404 * 104.44848 * 64.99946 * 11 10 8 15 15 C 1.50700 * 109.47098 * 180.02562 * 14 11 10 16 16 H 1.08001 * 119.99568 * 359.97438 * 15 14 11 17 17 C 1.37870 * 119.99929 * 180.02562 * 15 14 11 18 18 N 1.31518 * 120.00252 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00068 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46752 * 59.99501 * 19 17 15 21 21 H 1.48499 * 109.47116 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47032 * 300.00109 * 19 17 15 23 23 C 1.39966 * 118.21440 * 0.02562 * 7 6 5 24 24 C 1.37978 * 119.13523 * 359.97438 * 23 7 6 25 25 N 1.31911 * 120.97769 * 359.74642 * 24 23 7 26 26 H 1.09008 * 109.47142 * 299.99897 * 1 2 3 27 27 H 1.08992 * 109.47123 * 59.99863 * 1 2 3 28 28 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46955 * 239.99484 * 2 1 3 30 30 H 1.08999 * 109.47130 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46694 * 299.99854 * 3 2 1 32 32 H 1.08996 * 109.46889 * 59.99514 * 3 2 1 33 33 H 1.07999 * 120.52431 * 359.97438 * 6 5 4 34 34 H 0.97006 * 120.00327 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.46954 * 299.99799 * 14 11 10 36 36 H 1.09000 * 109.46843 * 60.00076 * 14 11 10 37 37 H 0.97000 * 119.99863 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.43205 * 179.97438 * 23 7 6 39 39 H 1.07998 * 119.50996 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2117 -2.0109 1.0654 6 6 2.6747 -2.7200 2.1664 7 6 2.8805 -4.0952 2.0465 8 6 3.3738 -4.8934 3.1931 9 8 3.6045 -4.3517 4.2560 10 7 3.5667 -6.2203 3.0572 11 16 4.1175 -7.1125 4.3389 12 8 4.2215 -8.4341 3.8271 13 8 5.2671 -6.4083 4.7879 14 6 2.7871 -7.0087 5.5677 15 6 3.1754 -7.7909 6.7959 16 1 4.1272 -8.2999 6.8333 17 6 2.3152 -7.8575 7.8713 18 7 1.1560 -7.2380 7.8255 19 14 2.7963 -8.8277 9.3934 20 1 4.0443 -8.2626 9.9666 21 1 1.7072 -8.7425 10.3993 22 1 3.0201 -10.2486 9.0245 23 6 2.6094 -4.6998 0.8137 24 6 2.1518 -3.9219 -0.2300 25 7 1.9637 -2.6251 -0.0784 26 1 -0.3634 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 2.8723 -2.2151 3.1005 34 1 3.3822 -6.6529 2.2087 35 1 2.6232 -5.9656 5.8385 36 1 1.8709 -7.4232 5.1471 37 1 0.5510 -7.2846 8.5823 38 1 2.7564 -5.7615 0.6810 39 1 1.9403 -4.3822 -1.1837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835410945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:28 Heat of formation + Delta-G solvation = -143.631553 kcal Electronic energy + Delta-G solvation = -25317.362752 eV Core-core repulsion = 21351.651890 eV Total energy + Delta-G solvation = -3965.710862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.13446 -41.00806 -39.15353 -38.13493 -37.10303 -35.90088 -35.43876 -34.26069 -33.69627 -31.22262 -31.12101 -28.15948 -26.68955 -25.60815 -24.49464 -23.54918 -21.88115 -20.97513 -20.19916 -19.23681 -18.53526 -18.42282 -17.59050 -17.32623 -17.01170 -16.84800 -16.55125 -16.29816 -16.10255 -16.04500 -15.47576 -15.07644 -14.84134 -14.52023 -14.18401 -14.12540 -13.73682 -13.50769 -13.29132 -13.24226 -13.18641 -13.13718 -13.09877 -12.86775 -12.73103 -12.56863 -12.18689 -12.00941 -11.89781 -11.83475 -11.69741 -11.18799 -11.10565 -10.79773 -10.76747 -9.62627 -8.43594 -6.63084 -0.83033 -0.62239 0.03611 1.27693 1.37099 1.41695 1.45460 1.49804 1.93837 2.29305 2.63037 2.71371 2.88477 2.91378 3.21903 3.31311 3.71746 3.82194 3.84689 3.95857 3.98040 4.03978 4.28636 4.56723 4.61665 4.63557 4.70654 4.72600 4.82717 4.85880 4.89199 4.89348 5.19829 5.27241 5.27784 5.32101 5.59517 5.67972 6.19789 6.24304 6.46904 6.66857 7.08983 8.69146 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002820 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.987988 B = 9926.406872 C =10662.574696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.074 3.926 3 C -0.148 4.148 4 O -0.315 6.315 5 C 0.316 3.684 6 C -0.151 4.151 7 C -0.066 4.066 8 C 0.581 3.419 9 O -0.517 6.517 10 N -1.033 6.033 11 S 2.602 3.398 12 O -0.969 6.969 13 O -0.981 6.981 14 C -0.422 4.422 15 C -0.568 4.568 16 H 0.070 0.930 17 C 0.025 3.975 18 N -0.909 5.909 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.270 1.270 22 H -0.256 1.256 23 C -0.165 4.165 24 C 0.150 3.850 25 N -0.524 5.524 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.141 0.859 34 H 0.447 0.553 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.275 0.725 38 H 0.182 0.818 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 10.976 -21.743 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.018 3.982 3 C -0.205 4.205 4 O -0.223 6.223 5 C 0.137 3.863 6 C -0.173 4.173 7 C -0.079 4.079 8 C 0.368 3.632 9 O -0.390 6.390 10 N -0.799 5.799 11 S 2.702 3.298 12 O -0.960 6.960 13 O -0.971 6.971 14 C -0.557 4.557 15 C -0.607 4.607 16 H 0.089 0.911 17 C -0.178 4.178 18 N -0.545 5.545 19 Si 0.789 3.211 20 H -0.190 1.190 21 H -0.194 1.194 22 H -0.180 1.180 23 C -0.185 4.185 24 C -0.006 4.006 25 N -0.249 5.249 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.159 0.841 34 H 0.288 0.712 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.200 0.800 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.137 11.689 -21.370 24.452 hybrid contribution -0.332 -0.756 1.455 1.673 sum -2.469 10.932 -19.915 22.852 Atomic orbital electron populations 1.22204 0.94076 1.02374 1.03584 1.22657 0.95105 0.93551 0.86865 1.21941 1.01841 0.92680 1.04081 1.86323 1.80119 1.15495 1.40375 1.19571 0.92027 0.85296 0.89374 1.21150 1.03094 0.93152 0.99880 1.19822 1.00718 0.93107 0.94207 1.18507 0.74931 0.81356 0.88369 1.90990 1.47932 1.70801 1.29264 1.54848 1.75218 1.17470 1.32346 1.05463 0.77050 0.72515 0.74765 1.93515 1.87179 1.36672 1.78629 1.93498 1.48384 1.73809 1.81454 1.27673 1.12011 1.06099 1.09894 1.20701 1.05290 1.34390 1.00332 0.91147 1.25880 0.94315 0.95779 1.01875 1.70035 1.09471 1.42051 1.32965 0.85468 0.78665 0.79503 0.77502 1.18975 1.19441 1.18035 1.22628 1.00724 1.03857 0.91280 1.23193 0.90794 0.86489 1.00109 1.67270 1.19932 1.14058 1.23604 0.92340 0.88768 0.93239 0.89110 0.92148 0.88033 0.91846 0.84146 0.71165 0.90413 0.89262 0.91643 0.80043 0.76775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.53 71.98 0.69 -1.70 16 2 C 0.07 1.22 3.10 30.60 0.09 1.32 16 3 C -0.15 -1.83 9.56 71.98 0.69 -1.14 16 4 O -0.32 -7.41 9.76 -90.00 -0.88 -8.29 16 5 C 0.32 7.56 7.45 84.80 0.63 8.19 16 6 C -0.15 -4.09 9.61 22.75 0.22 -3.87 16 7 C -0.07 -1.67 5.91 -19.90 -0.12 -1.79 16 8 C 0.58 19.30 7.54 86.88 0.65 19.95 16 9 O -0.52 -22.24 14.54 12.63 0.18 -22.06 16 10 N -1.03 -31.12 5.56 -175.40 -0.98 -32.09 16 11 S 2.60 109.64 5.03 -56.49 -0.28 109.36 16 12 O -0.97 -41.58 18.08 -127.65 -2.31 -43.89 16 13 O -0.98 -48.41 17.04 -120.72 -2.06 -50.46 16 14 C -0.42 -21.25 5.64 71.24 0.40 -20.85 16 15 C -0.57 -32.13 9.13 25.60 0.23 -31.90 16 16 H 0.07 3.85 7.71 -2.91 -0.02 3.83 16 17 C 0.03 1.40 5.46 84.65 0.46 1.86 16 18 N -0.91 -52.75 13.29 21.45 0.28 -52.47 16 19 Si 0.97 43.02 29.54 68.60 2.03 45.04 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 C -0.16 -2.58 9.61 22.63 0.22 -2.36 16 24 C 0.15 2.00 11.17 84.62 0.94 2.94 16 25 N -0.52 -10.08 8.62 -309.14 -2.66 -12.74 16 26 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 1.47 6.98 -2.39 -0.02 1.45 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.14 4.18 7.74 -2.91 -0.02 4.16 16 34 H 0.45 8.55 6.93 -96.74 -0.67 7.88 16 35 H 0.08 4.21 7.19 -2.39 -0.02 4.19 16 36 H 0.09 4.31 8.14 -2.39 -0.02 4.29 16 37 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.18 1.41 6.53 -2.91 -0.02 1.39 16 39 H 0.22 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -80.52 352.93 -1.13 -81.65 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.42 Total: 15.29 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 5.12 Total: -29.35 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -3.35 Total: -97.30 kcal Atomic # 8 Polarization: -119.64 SS G_CDS: -5.06 Total: -124.70 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 109.64 SS G_CDS: -0.28 Total: 109.36 kcal Total: -80.52 -1.13 -81.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.977 kcal (2) G-P(sol) polarization free energy of solvation -80.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds