Wall clock time and date at job start Tue Mar 31 2020 16:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46959 * 2 1 4 4 O 1.42904 * 109.46997 * 119.99618 * 2 1 3 5 5 C 1.35918 * 116.99842 * 155.10673 * 4 2 1 6 6 C 1.38853 * 120.40417 * 185.52196 * 5 4 2 7 7 N 1.31880 * 120.99986 * 179.97438 * 6 5 4 8 8 C 1.31687 * 121.93947 * 359.70012 * 7 6 5 9 9 C 1.39523 * 120.69071 * 0.58839 * 8 7 6 10 10 C 1.47855 * 120.52988 * 179.70238 * 9 8 7 11 11 O 1.21546 * 120.00170 * 179.72420 * 10 9 8 12 12 N 1.34779 * 119.99884 * 359.72329 * 10 9 8 13 13 S 1.65602 * 119.99851 * 180.02562 * 12 10 9 14 14 O 1.42101 * 104.27482 * 181.07206 * 13 12 10 15 15 O 1.42105 * 104.27645 * 308.92400 * 13 12 10 16 16 C 1.81396 * 104.45015 * 64.99755 * 13 12 10 17 17 C 1.50700 * 109.46893 * 180.02562 * 16 13 12 18 18 H 1.08003 * 120.00390 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99917 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99728 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99999 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47392 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46969 * 119.99879 * 21 19 17 24 24 H 1.48493 * 109.47437 * 240.00373 * 21 19 17 25 25 C 1.38836 * 120.40748 * 5.49777 * 5 4 2 26 26 H 1.08994 * 109.47537 * 300.00577 * 1 2 3 27 27 H 1.09006 * 109.46937 * 60.00164 * 1 2 3 28 28 H 1.08996 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47119 * 239.99720 * 2 1 3 30 30 H 1.08997 * 109.46985 * 59.99967 * 3 2 1 31 31 H 1.08999 * 109.46547 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47207 * 299.99310 * 3 2 1 33 33 H 1.07998 * 119.50030 * 359.95261 * 6 5 4 34 34 H 1.08004 * 119.64841 * 180.31268 * 8 7 6 35 35 H 0.97001 * 119.99755 * 359.97438 * 12 10 9 36 36 H 1.08997 * 109.46975 * 299.99910 * 16 13 12 37 37 H 1.09000 * 109.47302 * 60.00335 * 16 13 12 38 38 H 0.97000 * 119.99039 * 179.97438 * 20 19 17 39 39 H 1.08005 * 120.88257 * 0.04198 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2477 -1.2229 1.0987 6 6 3.7350 -1.9906 2.1480 7 7 4.9375 -2.5295 2.0941 8 6 5.7251 -2.3725 1.0505 9 6 5.3141 -1.6105 -0.0437 10 6 6.2039 -1.4312 -1.2108 11 8 5.8341 -0.7696 -2.1610 12 7 7.4251 -2.0013 -1.2210 13 16 8.4220 -1.7998 -2.5280 14 8 9.5850 -2.5476 -2.2001 15 8 7.6142 -2.1528 -3.6425 16 6 8.7911 -0.0239 -2.5463 17 6 9.7015 0.2879 -3.7060 18 1 10.0253 -0.5030 -4.3663 19 6 10.1202 1.5833 -3.9248 20 7 9.7255 2.5465 -3.1210 21 14 11.2493 1.9698 -5.3618 22 1 11.5457 0.7207 -6.1084 23 1 10.5837 2.9408 -6.2670 24 1 12.5156 2.5550 -4.8530 25 6 4.0438 -1.0236 -0.0211 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9564 -0.8900 33 1 3.1202 -2.1486 3.0217 34 1 6.7012 -2.8347 1.0435 35 1 7.7204 -2.5290 -0.4625 36 1 7.8636 0.5388 -2.6514 37 1 9.2816 0.2549 -1.6137 38 1 10.0204 3.4577 -3.2748 39 1 3.6923 -0.4310 -0.8529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835412269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:51 Heat of formation + Delta-G solvation = -116.756582 kcal Electronic energy + Delta-G solvation = -25665.468442 eV Core-core repulsion = 21700.922966 eV Total energy + Delta-G solvation = -3964.545476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.26364 -39.77397 -38.58121 -36.31901 -35.25666 -34.42877 -33.66161 -33.39750 -32.59114 -30.46429 -29.11019 -27.67052 -25.36508 -24.21859 -23.58726 -21.74664 -21.45635 -19.52290 -18.97499 -17.49041 -17.34920 -17.10957 -16.82945 -16.36585 -15.95482 -15.72309 -15.02119 -14.88191 -14.64970 -14.57828 -14.34729 -14.20625 -13.73835 -13.29383 -12.91881 -12.71593 -12.59760 -12.57128 -12.24884 -12.19221 -12.00475 -11.50012 -11.39564 -11.36864 -11.27445 -11.15738 -10.96795 -10.75299 -10.63628 -10.59584 -10.08691 -9.88345 -9.76719 -9.24076 -8.80121 -8.75185 -6.37132 -4.48470 0.27464 0.88639 0.93472 2.46603 2.67967 3.01701 3.18512 3.25661 3.32307 3.50433 3.90099 4.18975 4.23694 4.37713 4.38739 4.48462 4.51879 4.53873 4.65314 4.72690 4.91737 5.04073 5.10111 5.12795 5.20516 5.33130 5.39314 5.39638 5.57154 5.63592 5.74577 5.85362 5.97536 6.50936 6.68808 6.85165 6.86814 7.37548 7.49250 7.56253 7.69572 8.52782 9.19251 10.74641 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003345 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.865866 B = 8368.213167 C = 9471.113547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 C -0.184 4.184 4 O -0.301 6.301 5 C 0.077 3.923 6 C 0.098 3.902 7 N -0.447 5.447 8 C 0.098 3.902 9 C -0.146 4.146 10 C 0.584 3.416 11 O -0.477 6.477 12 N -1.055 6.055 13 S 2.552 3.448 14 O -0.964 6.964 15 O -0.950 6.950 16 C -0.403 4.403 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.077 3.923 20 N -0.877 5.877 21 Si 0.908 3.092 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.107 4.107 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.424 0.576 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.269 0.731 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.996 -4.818 11.200 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 C -0.241 4.241 4 O -0.214 6.214 5 C 0.029 3.971 6 C -0.060 4.060 7 N -0.155 5.155 8 C -0.060 4.060 9 C -0.153 4.153 10 C 0.369 3.631 11 O -0.349 6.349 12 N -0.814 5.814 13 S 2.655 3.345 14 O -0.955 6.955 15 O -0.940 6.940 16 C -0.540 4.540 17 C -0.574 4.574 18 H 0.090 0.910 19 C -0.130 4.130 20 N -0.512 5.512 21 Si 0.734 3.266 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.134 4.134 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.187 0.813 34 H 0.183 0.817 35 H 0.259 0.741 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.891 -5.382 10.831 19.970 hybrid contribution 0.469 1.178 -0.852 1.527 sum -15.422 -4.204 9.979 18.844 Atomic orbital electron populations 1.21848 0.91922 1.03278 1.03345 1.22608 0.95822 0.93018 0.87028 1.22414 1.02587 0.95497 1.03582 1.86152 1.27891 1.68027 1.39328 1.20036 0.86265 0.95436 0.95335 1.22466 0.92533 0.93558 0.97459 1.67776 1.03502 1.19128 1.25131 1.22918 0.99574 0.95362 0.88112 1.20809 0.95758 1.02055 0.96632 1.17858 0.80806 0.77935 0.86480 1.90988 1.73173 1.36234 1.34496 1.55495 1.27098 1.59363 1.39465 1.07253 0.72974 0.81663 0.72642 1.93532 1.47658 1.71524 1.82760 1.93536 1.67843 1.83854 1.48762 1.27607 1.07523 1.12243 1.06620 1.20326 1.30546 0.95492 1.11083 0.90996 1.24929 0.95738 0.95493 0.96790 1.69967 1.43273 1.00990 1.37006 0.86264 0.79938 0.79023 0.81406 1.18922 1.20272 1.20281 1.21971 0.93114 0.99690 0.98647 0.91314 0.90174 0.91558 0.90438 0.91209 0.91546 0.90409 0.81315 0.81719 0.74088 0.88360 0.89539 0.92170 0.82429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.56 37.16 0.36 -0.54 16 2 C 0.07 0.59 2.85 -26.73 -0.08 0.51 16 3 C -0.18 -1.50 9.19 37.16 0.34 -1.16 16 4 O -0.30 -2.94 9.81 -19.48 -0.19 -3.13 16 5 C 0.08 0.83 6.61 -39.13 -0.26 0.57 16 6 C 0.10 0.99 11.13 -17.30 -0.19 0.80 16 7 N -0.45 -5.03 10.34 -12.79 -0.13 -5.17 16 8 C 0.10 1.11 10.71 -17.14 -0.18 0.92 16 9 C -0.15 -1.92 5.89 -104.84 -0.62 -2.53 16 10 C 0.58 9.61 7.52 -12.32 -0.09 9.52 16 11 O -0.48 -9.59 14.52 -11.81 -0.17 -9.76 16 12 N -1.05 -16.64 5.56 30.53 0.17 -16.47 16 13 S 2.55 54.11 5.03 -107.50 -0.54 53.57 16 14 O -0.96 -21.49 18.08 -57.54 -1.04 -22.53 16 15 O -0.95 -23.12 17.04 -64.79 -1.10 -24.23 16 16 C -0.40 -9.83 5.64 36.01 0.20 -9.63 16 17 C -0.53 -14.78 9.13 -34.44 -0.31 -15.09 16 18 H 0.07 1.94 7.71 -52.48 -0.40 1.54 16 19 C 0.08 2.13 5.46 -17.82 -0.10 2.03 16 20 N -0.88 -24.75 13.29 55.43 0.74 -24.02 16 21 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 C -0.11 -1.31 7.87 -38.72 -0.30 -1.61 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.65 6.35 -51.93 -0.33 0.32 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.64 6.92 -51.93 -0.36 0.28 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.17 1.39 6.42 -52.48 -0.34 1.05 16 35 H 0.42 4.81 6.85 -34.48 -0.24 4.57 16 36 H 0.10 2.50 7.19 -51.93 -0.37 2.13 16 37 H 0.09 2.03 8.14 -51.92 -0.42 1.61 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.16 1.88 5.26 -52.48 -0.28 1.61 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -35.60 347.98 -7.70 -43.29 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.41 Total: 3.52 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -1.24 Total: -16.23 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.77 Total: -45.66 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -2.51 Total: -59.64 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 54.11 SS G_CDS: -0.54 Total: 53.57 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.60 -7.70 -43.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.463 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds