Wall clock time and date at job start Tue Mar 31 2020 16:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46959 * 2 1 4 4 O 1.42904 * 109.46997 * 119.99618 * 2 1 3 5 5 C 1.35918 * 116.99842 * 155.10673 * 4 2 1 6 6 C 1.38853 * 120.40417 * 185.52196 * 5 4 2 7 7 N 1.31880 * 120.99986 * 179.97438 * 6 5 4 8 8 C 1.31687 * 121.93947 * 359.70012 * 7 6 5 9 9 C 1.39523 * 120.69071 * 0.58839 * 8 7 6 10 10 C 1.47855 * 120.52988 * 179.70238 * 9 8 7 11 11 O 1.21546 * 120.00170 * 179.72420 * 10 9 8 12 12 N 1.34779 * 119.99884 * 359.72329 * 10 9 8 13 13 S 1.65602 * 119.99851 * 180.02562 * 12 10 9 14 14 O 1.42101 * 104.27482 * 181.07206 * 13 12 10 15 15 O 1.42105 * 104.27645 * 308.92400 * 13 12 10 16 16 C 1.81396 * 104.45015 * 64.99755 * 13 12 10 17 17 C 1.50700 * 109.46893 * 180.02562 * 16 13 12 18 18 H 1.08003 * 120.00390 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99917 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99728 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99999 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47392 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46969 * 119.99879 * 21 19 17 24 24 H 1.48493 * 109.47437 * 240.00373 * 21 19 17 25 25 C 1.38836 * 120.40748 * 5.49777 * 5 4 2 26 26 H 1.08994 * 109.47537 * 300.00577 * 1 2 3 27 27 H 1.09006 * 109.46937 * 60.00164 * 1 2 3 28 28 H 1.08996 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47119 * 239.99720 * 2 1 3 30 30 H 1.08997 * 109.46985 * 59.99967 * 3 2 1 31 31 H 1.08999 * 109.46547 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47207 * 299.99310 * 3 2 1 33 33 H 1.07998 * 119.50030 * 359.95261 * 6 5 4 34 34 H 1.08004 * 119.64841 * 180.31268 * 8 7 6 35 35 H 0.97001 * 119.99755 * 359.97438 * 12 10 9 36 36 H 1.08997 * 109.46975 * 299.99910 * 16 13 12 37 37 H 1.09000 * 109.47302 * 60.00335 * 16 13 12 38 38 H 0.97000 * 119.99039 * 179.97438 * 20 19 17 39 39 H 1.08005 * 120.88257 * 0.04198 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2477 -1.2229 1.0987 6 6 3.7350 -1.9906 2.1480 7 7 4.9375 -2.5295 2.0941 8 6 5.7251 -2.3725 1.0505 9 6 5.3141 -1.6105 -0.0437 10 6 6.2039 -1.4312 -1.2108 11 8 5.8341 -0.7696 -2.1610 12 7 7.4251 -2.0013 -1.2210 13 16 8.4220 -1.7998 -2.5280 14 8 9.5850 -2.5476 -2.2001 15 8 7.6142 -2.1528 -3.6425 16 6 8.7911 -0.0239 -2.5463 17 6 9.7015 0.2879 -3.7060 18 1 10.0253 -0.5030 -4.3663 19 6 10.1202 1.5833 -3.9248 20 7 9.7255 2.5465 -3.1210 21 14 11.2493 1.9698 -5.3618 22 1 11.5457 0.7207 -6.1084 23 1 10.5837 2.9408 -6.2670 24 1 12.5156 2.5550 -4.8530 25 6 4.0438 -1.0236 -0.0211 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9564 -0.8900 33 1 3.1202 -2.1486 3.0217 34 1 6.7012 -2.8347 1.0435 35 1 7.7204 -2.5290 -0.4625 36 1 7.8636 0.5388 -2.6514 37 1 9.2816 0.2549 -1.6137 38 1 10.0204 3.4577 -3.2748 39 1 3.6923 -0.4310 -0.8529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835412269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:47 Heat of formation + Delta-G solvation = -143.976378 kcal Electronic energy + Delta-G solvation = -25666.648781 eV Core-core repulsion = 21700.922966 eV Total energy + Delta-G solvation = -3965.725815 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -42.23484 -40.95183 -39.47307 -38.14612 -37.10854 -35.86575 -35.44553 -34.34972 -33.55725 -31.34377 -31.12382 -28.25091 -26.45214 -25.60296 -25.07164 -22.94804 -22.20057 -20.98721 -20.14824 -19.24011 -18.51151 -18.34616 -17.93116 -17.68546 -17.50532 -16.73867 -16.63705 -16.29343 -16.06455 -16.02721 -15.41476 -15.15185 -14.60521 -14.53732 -14.17146 -14.04643 -13.73210 -13.59609 -13.49535 -13.40313 -13.24776 -13.14558 -13.13749 -12.89483 -12.76911 -12.58879 -12.18865 -12.08129 -11.97049 -11.80682 -11.78525 -11.15191 -11.04929 -10.81984 -10.78583 -9.63385 -8.44511 -6.63680 -0.83930 -0.70398 0.00544 1.23256 1.37080 1.38022 1.48526 1.52817 1.94418 2.28671 2.56145 2.67389 2.84858 2.90073 3.29699 3.35158 3.48397 3.60571 3.69234 3.78552 3.84157 3.92335 4.08926 4.25673 4.60506 4.64217 4.68611 4.69748 4.72665 4.77261 4.80668 4.86731 5.16832 5.18347 5.25133 5.27674 5.56276 5.66954 6.07029 6.24165 6.46267 6.65328 7.08379 8.68602 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003345 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.865866 B = 8368.213167 C = 9471.113547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 C -0.183 4.183 4 O -0.301 6.301 5 C 0.078 3.922 6 C 0.112 3.888 7 N -0.455 5.455 8 C 0.106 3.894 9 C -0.162 4.162 10 C 0.585 3.415 11 O -0.520 6.520 12 N -1.038 6.038 13 S 2.599 3.401 14 O -0.972 6.972 15 O -0.980 6.980 16 C -0.421 4.421 17 C -0.567 4.567 18 H 0.069 0.931 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.969 3.031 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.264 1.264 25 C -0.115 4.115 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.200 0.800 34 H 0.192 0.808 35 H 0.445 0.555 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.275 0.725 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.613 -5.527 12.373 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.009 3.991 3 C -0.240 4.240 4 O -0.214 6.214 5 C 0.030 3.970 6 C -0.047 4.047 7 N -0.163 5.163 8 C -0.051 4.051 9 C -0.169 4.169 10 C 0.373 3.627 11 O -0.394 6.394 12 N -0.803 5.803 13 S 2.700 3.300 14 O -0.962 6.962 15 O -0.971 6.971 16 C -0.556 4.556 17 C -0.606 4.606 18 H 0.088 0.912 19 C -0.178 4.178 20 N -0.544 5.544 21 Si 0.791 3.209 22 H -0.185 1.185 23 H -0.194 1.194 24 H -0.188 1.188 25 C -0.142 4.142 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.217 0.783 34 H 0.209 0.791 35 H 0.286 0.714 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.488 -6.096 12.030 21.301 hybrid contribution 0.525 1.378 -1.084 1.830 sum -15.963 -4.718 10.946 19.923 Atomic orbital electron populations 1.21861 0.89990 1.03781 1.04317 1.22800 0.97265 0.92661 0.86369 1.22413 1.01254 0.95864 1.04458 1.86160 1.27232 1.67962 1.39999 1.20083 0.86503 0.95557 0.94906 1.23010 0.92213 0.91681 0.97784 1.67906 1.04001 1.19580 1.24843 1.23290 1.00502 0.94186 0.87142 1.20547 0.95737 1.04538 0.96127 1.18377 0.80723 0.76681 0.86890 1.90970 1.73902 1.38179 1.36358 1.54900 1.26454 1.59614 1.39286 1.05533 0.72573 0.79277 0.72645 1.93514 1.48737 1.70753 1.83212 1.93495 1.68743 1.83545 1.51274 1.27667 1.06216 1.15843 1.05850 1.20756 1.31504 0.96081 1.12282 0.91242 1.25876 0.97149 0.95330 0.99461 1.70047 1.44298 1.01503 1.38556 0.85342 0.78365 0.79046 0.78191 1.18459 1.19404 1.18828 1.22034 0.93180 0.99676 0.99271 0.90750 0.88805 0.91281 0.91016 0.90514 0.93576 0.89388 0.78285 0.79149 0.71400 0.90195 0.89340 0.91641 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.56 71.98 0.69 -0.82 16 2 C 0.06 1.01 2.85 30.60 0.09 1.10 16 3 C -0.18 -2.92 9.19 71.98 0.66 -2.26 16 4 O -0.30 -5.42 9.81 -92.63 -0.91 -6.33 16 5 C 0.08 1.55 6.61 22.56 0.15 1.70 16 6 C 0.11 1.96 11.13 84.83 0.94 2.90 16 7 N -0.46 -9.07 10.34 -194.39 -2.01 -11.08 16 8 C 0.11 2.18 10.71 85.02 0.91 3.09 16 9 C -0.16 -4.18 5.89 -20.01 -0.12 -4.29 16 10 C 0.59 19.42 7.52 86.79 0.65 20.08 16 11 O -0.52 -21.68 14.52 12.52 0.18 -21.50 16 12 N -1.04 -32.25 5.56 -175.60 -0.98 -33.23 16 13 S 2.60 110.93 5.03 -56.49 -0.28 110.65 16 14 O -0.97 -42.66 18.08 -127.65 -2.31 -44.96 16 15 O -0.98 -48.39 17.04 -120.72 -2.06 -50.44 16 16 C -0.42 -21.18 5.64 71.24 0.40 -20.78 16 17 C -0.57 -32.02 9.13 25.60 0.23 -31.79 16 18 H 0.07 3.82 7.71 -2.91 -0.02 3.80 16 19 C 0.03 1.41 5.46 84.66 0.46 1.87 16 20 N -0.91 -52.14 13.29 21.45 0.28 -51.85 16 21 Si 0.97 42.83 29.54 68.60 2.03 44.86 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 25 C -0.11 -2.77 7.87 22.83 0.18 -2.59 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 1.21 6.35 -2.39 -0.02 1.19 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 0.92 6.92 -2.39 -0.02 0.90 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.19 2.67 6.42 -2.91 -0.02 2.65 16 35 H 0.45 9.37 6.85 -96.74 -0.66 8.71 16 36 H 0.08 4.28 7.19 -2.39 -0.02 4.26 16 37 H 0.09 4.30 8.14 -2.39 -0.02 4.28 16 38 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 39 H 0.15 3.78 5.26 -2.91 -0.02 3.76 16 Total: -1.00 -77.01 347.98 -0.36 -77.36 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.44 Total: 18.32 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 5.25 Total: -31.80 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -2.70 Total: -96.16 kcal Atomic # 8 Polarization: -118.14 SS G_CDS: -5.09 Total: -123.23 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 110.93 SS G_CDS: -0.28 Total: 110.65 kcal Total: -77.01 -0.36 -77.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.615 kcal (2) G-P(sol) polarization free energy of solvation -77.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds