Wall clock time and date at job start Tue Mar 31 2020 14:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47422 * 270.00449 * 3 2 1 5 5 H 1.48501 * 109.47056 * 29.99978 * 3 2 1 6 6 H 1.48493 * 109.47404 * 150.00000 * 3 2 1 7 7 C 1.37878 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00204 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47445 * 180.02562 * 9 7 2 11 11 C 1.42903 * 114.00405 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47112 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47248 * 65.00234 * 12 11 10 14 14 C 1.34223 * 117.00334 * 179.97438 * 13 12 11 15 15 O 1.20826 * 120.00066 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00335 * 179.97438 * 14 13 12 17 17 O 1.42895 * 109.47289 * 180.02562 * 16 14 13 18 18 C 1.42902 * 113.99895 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.47123 * 180.02562 * 18 17 16 20 20 C 1.38270 * 119.99101 * 270.27500 * 19 18 17 21 21 C 1.38215 * 120.02537 * 180.27948 * 20 19 18 22 22 C 1.38238 * 120.01126 * 359.44038 * 21 20 19 23 23 C 1.38325 * 119.98878 * 0.28199 * 22 21 20 24 24 Cl 1.73606 * 120.01335 * 179.97438 * 23 22 21 25 25 C 1.38193 * 119.99765 * 89.99902 * 19 18 17 26 26 H 0.96997 * 120.00134 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47520 * 59.99672 * 9 7 2 28 28 H 1.09007 * 109.46777 * 299.99625 * 9 7 2 29 29 H 1.09001 * 109.46787 * 59.99229 * 11 10 9 30 30 H 1.08996 * 109.46518 * 299.99498 * 11 10 9 31 31 H 1.08998 * 109.47782 * 304.99843 * 12 11 10 32 32 H 1.08998 * 109.47109 * 184.99401 * 12 11 10 33 33 H 1.09001 * 109.46911 * 59.99517 * 16 14 13 34 34 H 1.09002 * 109.47203 * 300.00235 * 16 14 13 35 35 H 1.08998 * 109.47558 * 59.99668 * 18 17 16 36 36 H 1.09000 * 109.47085 * 299.99520 * 18 17 16 37 37 H 1.07997 * 119.98420 * 0.02562 * 20 19 18 38 38 H 1.08002 * 119.99636 * 179.72646 * 21 20 19 39 39 H 1.07999 * 120.00577 * 180.25936 * 22 21 20 40 40 H 1.08003 * 120.00423 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 2.1797 -3.5853 -0.0015 11 6 1.5651 -4.8755 -0.0019 12 6 2.6481 -5.9562 -0.0023 13 8 3.3993 -5.8890 1.2385 14 6 4.3934 -6.7767 1.3979 15 8 4.6278 -7.5836 0.5296 16 6 5.2171 -6.7672 2.6598 17 8 6.2048 -7.7976 2.5918 18 6 7.0440 -7.8754 3.7458 19 6 8.0429 -8.9894 3.5663 20 6 7.7323 -10.2703 3.9843 21 6 8.6502 -11.2914 3.8253 22 6 9.8748 -11.0349 3.2377 23 6 10.1839 -9.7549 2.8140 24 17 11.7220 -9.4319 2.0766 25 6 9.2669 -8.7319 2.9788 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8881 29 1 0.9453 -4.9823 -0.8922 30 1 0.9447 -4.9826 0.8878 31 1 3.3217 -5.7954 -0.8440 32 1 2.1821 -6.9374 -0.0921 33 1 4.5685 -6.9411 3.5184 34 1 5.7084 -5.7999 2.7657 35 1 6.4331 -8.0731 4.6266 36 1 7.5728 -6.9311 3.8748 37 1 6.7737 -10.4721 4.4390 38 1 8.4088 -12.2908 4.1560 39 1 10.5903 -11.8337 3.1097 40 1 9.5078 -7.7322 2.6486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838420907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:30 Heat of formation + Delta-G solvation = -160.605362 kcal Electronic energy + Delta-G solvation = -23623.418468 eV Core-core repulsion = 19622.635109 eV Total energy + Delta-G solvation = -4000.783359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42279 -39.90127 -38.09620 -37.00806 -36.77424 -35.96645 -32.80065 -32.58007 -31.19043 -30.45385 -28.63692 -26.93014 -26.18457 -23.15481 -22.65236 -22.25366 -21.97700 -21.02640 -18.06641 -17.39002 -17.05626 -16.96408 -16.50358 -16.31909 -16.22465 -15.81123 -15.61103 -15.02035 -14.65699 -14.40574 -14.27875 -14.05547 -13.86446 -13.45242 -13.15590 -12.81998 -12.42030 -12.36253 -11.98711 -11.93520 -11.84702 -11.72131 -11.45767 -11.20440 -10.95686 -10.86584 -10.78376 -10.42557 -10.33620 -10.15078 -10.06667 -9.44515 -9.15396 -9.14937 -8.90186 -8.23844 -6.14036 -4.15788 0.62993 0.77342 1.71837 2.21182 2.29234 3.12345 3.28724 3.33791 3.39043 3.76803 4.29174 4.30332 4.33722 4.55357 4.62718 4.68924 4.72191 4.77668 4.86561 4.89949 4.97060 5.02439 5.20126 5.22548 5.26585 5.40892 5.43794 5.74323 5.83322 5.83879 5.89348 6.00226 6.04694 6.29903 6.53361 6.58505 7.02860 7.37276 7.75737 7.82459 8.10139 8.49681 8.96665 9.49005 10.97445 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.001754 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.316588 B =15962.378497 C =16919.400181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.076 3.924 13 O -0.340 6.340 14 C 0.461 3.539 15 O -0.496 6.496 16 C 0.070 3.930 17 O -0.361 6.361 18 C 0.102 3.898 19 C -0.077 4.077 20 C -0.091 4.091 21 C -0.111 4.111 22 C -0.104 4.104 23 C -0.038 4.038 24 Cl -0.069 7.069 25 C -0.086 4.086 26 H 0.264 0.736 27 H 0.006 0.994 28 H 0.008 0.992 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.841 -22.826 10.871 30.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.003 3.997 13 O -0.256 6.256 14 C 0.302 3.698 15 O -0.383 6.383 16 C -0.007 4.007 17 O -0.281 6.281 18 C 0.026 3.974 19 C -0.078 4.078 20 C -0.109 4.109 21 C -0.129 4.129 22 C -0.123 4.123 23 C -0.065 4.065 24 Cl -0.040 7.040 25 C -0.105 4.105 26 H 0.074 0.926 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.080 -22.986 10.357 30.452 hybrid contribution 0.087 0.981 -0.074 0.988 sum 17.167 -22.004 10.283 29.743 Atomic orbital electron populations 1.69960 1.06091 1.27210 1.50486 1.24955 0.95004 0.99468 0.95113 0.86319 0.79650 0.82167 0.78255 1.20454 1.21065 1.19614 1.21043 0.94096 0.89283 1.50903 0.91509 1.20245 0.88749 0.83482 0.95543 1.87917 1.35345 1.12615 1.95236 1.22329 0.93193 0.85429 1.00656 1.23254 0.93587 0.98911 0.83941 1.86547 1.43254 1.53830 1.41993 1.23037 0.79594 0.78666 0.88495 1.90681 1.67086 1.37548 1.42973 1.21692 0.91172 0.93605 0.94264 1.88032 1.46326 1.53494 1.40230 1.21383 0.90961 0.96656 0.88377 1.19478 0.93864 0.94744 0.99690 1.21210 0.99447 0.91854 0.98420 1.21128 0.93031 0.99701 0.99050 1.21131 0.97763 0.95165 0.98232 1.20903 0.88664 0.95218 1.01691 1.98385 1.28514 1.95814 1.81301 1.21005 0.92588 0.99267 0.97643 0.92623 0.97575 0.97456 0.91805 0.93123 0.90338 0.90286 0.88650 0.88350 0.91355 0.91389 0.85039 0.84749 0.84811 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -15.07 9.43 -34.44 -0.32 -15.40 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.25 5.69 36.00 0.20 5.46 16 10 O -0.39 -9.37 10.30 -38.80 -0.40 -9.77 16 11 C 0.06 1.10 6.33 37.15 0.24 1.34 16 12 C 0.08 1.20 5.84 37.15 0.22 1.42 16 13 O -0.34 -5.50 10.19 -42.01 -0.43 -5.93 16 14 C 0.46 6.80 8.03 36.01 0.29 7.09 16 15 O -0.50 -8.77 16.25 -25.48 -0.41 -9.18 16 16 C 0.07 0.72 6.53 36.01 0.24 0.96 16 17 O -0.36 -4.11 9.86 -55.19 -0.54 -4.66 16 18 C 0.10 0.78 6.06 36.01 0.22 1.00 16 19 C -0.08 -0.65 5.51 -104.63 -0.58 -1.22 16 20 C -0.09 -0.66 9.70 -39.58 -0.38 -1.04 16 21 C -0.11 -0.72 10.05 -39.59 -0.40 -1.11 16 22 C -0.10 -0.75 9.83 -39.55 -0.39 -1.14 16 23 C -0.04 -0.33 6.32 -39.50 -0.25 -0.58 16 24 Cl -0.07 -0.58 28.96 -51.86 -1.50 -2.09 16 25 C -0.09 -0.76 9.49 -39.55 -0.38 -1.13 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 32 H 0.08 1.04 8.13 -51.93 -0.42 0.61 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -34.98 373.61 -8.79 -43.77 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -5.46 Total: -5.72 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.39 Total: -2.86 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -1.79 Total: -29.53 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.98 -8.79 -43.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838420907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.831 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds