Wall clock time and date at job start Tue Mar 31 2020 14:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47422 * 270.00449 * 3 2 1 5 5 H 1.48501 * 109.47056 * 29.99978 * 3 2 1 6 6 H 1.48493 * 109.47404 * 150.00000 * 3 2 1 7 7 C 1.37878 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00204 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47445 * 180.02562 * 9 7 2 11 11 C 1.42903 * 114.00405 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47112 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47248 * 65.00234 * 12 11 10 14 14 C 1.34223 * 117.00334 * 179.97438 * 13 12 11 15 15 O 1.20826 * 120.00066 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00335 * 179.97438 * 14 13 12 17 17 O 1.42895 * 109.47289 * 180.02562 * 16 14 13 18 18 C 1.42902 * 113.99895 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.47123 * 180.02562 * 18 17 16 20 20 C 1.38270 * 119.99101 * 270.27500 * 19 18 17 21 21 C 1.38215 * 120.02537 * 180.27948 * 20 19 18 22 22 C 1.38238 * 120.01126 * 359.44038 * 21 20 19 23 23 C 1.38325 * 119.98878 * 0.28199 * 22 21 20 24 24 Cl 1.73606 * 120.01335 * 179.97438 * 23 22 21 25 25 C 1.38193 * 119.99765 * 89.99902 * 19 18 17 26 26 H 0.96997 * 120.00134 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47520 * 59.99672 * 9 7 2 28 28 H 1.09007 * 109.46777 * 299.99625 * 9 7 2 29 29 H 1.09001 * 109.46787 * 59.99229 * 11 10 9 30 30 H 1.08996 * 109.46518 * 299.99498 * 11 10 9 31 31 H 1.08998 * 109.47782 * 304.99843 * 12 11 10 32 32 H 1.08998 * 109.47109 * 184.99401 * 12 11 10 33 33 H 1.09001 * 109.46911 * 59.99517 * 16 14 13 34 34 H 1.09002 * 109.47203 * 300.00235 * 16 14 13 35 35 H 1.08998 * 109.47558 * 59.99668 * 18 17 16 36 36 H 1.09000 * 109.47085 * 299.99520 * 18 17 16 37 37 H 1.07997 * 119.98420 * 0.02562 * 20 19 18 38 38 H 1.08002 * 119.99636 * 179.72646 * 21 20 19 39 39 H 1.07999 * 120.00577 * 180.25936 * 22 21 20 40 40 H 1.08003 * 120.00423 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 2.1797 -3.5853 -0.0015 11 6 1.5651 -4.8755 -0.0019 12 6 2.6481 -5.9562 -0.0023 13 8 3.3993 -5.8890 1.2385 14 6 4.3934 -6.7767 1.3979 15 8 4.6278 -7.5836 0.5296 16 6 5.2171 -6.7672 2.6598 17 8 6.2048 -7.7976 2.5918 18 6 7.0440 -7.8754 3.7458 19 6 8.0429 -8.9894 3.5663 20 6 7.7323 -10.2703 3.9843 21 6 8.6502 -11.2914 3.8253 22 6 9.8748 -11.0349 3.2377 23 6 10.1839 -9.7549 2.8140 24 17 11.7220 -9.4319 2.0766 25 6 9.2669 -8.7319 2.9788 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8881 29 1 0.9453 -4.9823 -0.8922 30 1 0.9447 -4.9826 0.8878 31 1 3.3217 -5.7954 -0.8440 32 1 2.1821 -6.9374 -0.0921 33 1 4.5685 -6.9411 3.5184 34 1 5.7084 -5.7999 2.7657 35 1 6.4331 -8.0731 4.6266 36 1 7.5728 -6.9311 3.8748 37 1 6.7737 -10.4721 4.4390 38 1 8.4088 -12.2908 4.1560 39 1 10.5903 -11.8337 3.1097 40 1 9.5078 -7.7322 2.6486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838420907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:29 Heat of formation + Delta-G solvation = -181.044101 kcal Electronic energy + Delta-G solvation = -23624.304758 eV Core-core repulsion = 19622.635109 eV Total energy + Delta-G solvation = -4001.669650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.57052 -40.49600 -39.00737 -38.51536 -37.47872 -37.27966 -34.94348 -33.17732 -31.88448 -31.72690 -29.70988 -28.83110 -26.83988 -24.57917 -23.79687 -23.69780 -22.54616 -22.18633 -19.05911 -18.70081 -18.13533 -18.11905 -17.74508 -17.42890 -17.21384 -16.87048 -16.48635 -16.42161 -16.17891 -15.80651 -15.35562 -14.86703 -14.62778 -14.45616 -14.32861 -14.06874 -13.74823 -13.27571 -13.21890 -13.12153 -12.90731 -12.70369 -12.54002 -12.45515 -12.40603 -12.32060 -12.00414 -11.78675 -11.76391 -11.50052 -11.27801 -10.89220 -10.81569 -10.26834 -10.00351 -9.72667 -8.31970 -6.43920 0.06131 0.21057 1.08757 1.10942 1.32842 1.41135 1.43436 1.55530 2.34762 2.49738 3.02000 3.05471 3.08097 3.56796 3.75856 3.82815 3.91781 4.04303 4.09933 4.17501 4.18150 4.24223 4.27676 4.40608 4.41960 4.50524 4.52217 4.66816 4.74841 4.86262 4.89760 5.18232 5.19506 5.31956 5.35676 5.45755 5.54741 5.78572 5.91612 5.95515 6.49955 6.67891 6.79956 7.27529 8.80036 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.001754 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.316588 B =15962.378497 C =16919.400181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.207 3.793 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.079 3.921 13 O -0.353 6.353 14 C 0.458 3.542 15 O -0.532 6.532 16 C 0.075 3.925 17 O -0.391 6.391 18 C 0.099 3.901 19 C -0.093 4.093 20 C -0.097 4.097 21 C -0.110 4.110 22 C -0.110 4.110 23 C -0.054 4.054 24 Cl -0.076 7.076 25 C -0.104 4.104 26 H 0.271 0.729 27 H -0.008 1.008 28 H -0.008 1.008 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.224 -23.082 12.099 31.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.132 3.868 10 O -0.330 6.330 11 C -0.023 4.023 12 C 0.006 3.994 13 O -0.270 6.270 14 C 0.302 3.698 15 O -0.421 6.421 16 C -0.002 4.002 17 O -0.311 6.311 18 C 0.024 3.976 19 C -0.093 4.093 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.080 4.080 24 Cl -0.048 7.048 25 C -0.122 4.122 26 H 0.080 0.920 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.148 0.852 34 H 0.135 0.865 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.168 0.832 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.465 -23.261 11.597 31.314 hybrid contribution -0.049 0.934 -0.440 1.033 sum 17.416 -22.327 11.157 30.435 Atomic orbital electron populations 1.70057 1.07632 1.28658 1.50398 1.25936 0.95992 1.03295 0.93953 0.85196 0.78408 0.77122 0.78772 1.19453 1.19853 1.18899 1.21379 0.94085 0.90909 1.52335 0.92163 1.19884 0.88571 0.84340 0.93981 1.87860 1.35550 1.14200 1.95348 1.22648 0.94384 0.83231 1.02007 1.23205 0.93066 0.99300 0.83835 1.86544 1.43928 1.54598 1.41919 1.23964 0.78951 0.77385 0.89485 1.90659 1.67954 1.38902 1.44563 1.21860 0.91298 0.94406 0.92646 1.87986 1.46977 1.53849 1.42307 1.21603 0.90888 0.97128 0.88022 1.19695 0.93856 0.95688 1.00055 1.21532 1.00370 0.91554 0.98045 1.21487 0.92366 1.00846 0.98090 1.21413 0.98541 0.95021 0.97854 1.21083 0.88548 0.95949 1.02464 1.98375 1.28968 1.95908 1.81506 1.21132 0.93259 0.99433 0.98413 0.92017 0.99047 0.99030 0.90026 0.92165 0.91235 0.87300 0.85180 0.86540 0.88735 0.90201 0.83204 0.82058 0.83276 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.98 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.55 -32.52 9.43 25.60 0.24 -32.27 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.45 5.69 71.23 0.41 11.85 16 10 O -0.41 -19.82 10.30 -145.57 -1.50 -21.32 16 11 C 0.05 1.92 6.33 71.98 0.46 2.37 16 12 C 0.08 2.44 5.84 71.98 0.42 2.86 16 13 O -0.35 -11.15 10.19 -48.71 -0.50 -11.65 16 14 C 0.46 13.13 8.03 71.24 0.57 13.70 16 15 O -0.53 -18.68 16.25 28.40 0.46 -18.22 16 16 C 0.07 1.40 6.53 71.24 0.47 1.86 16 17 O -0.39 -8.34 9.86 -129.90 -1.28 -9.62 16 18 C 0.10 1.33 6.06 71.24 0.43 1.76 16 19 C -0.09 -1.45 5.51 -19.87 -0.11 -1.56 16 20 C -0.10 -1.23 9.70 22.27 0.22 -1.01 16 21 C -0.11 -1.21 10.05 22.26 0.22 -0.99 16 22 C -0.11 -1.45 9.83 22.29 0.22 -1.24 16 23 C -0.05 -0.91 6.32 22.32 0.14 -0.77 16 24 Cl -0.08 -1.30 28.96 -2.72 -0.08 -1.38 16 25 C -0.10 -1.80 9.49 22.29 0.21 -1.59 16 26 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 29 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 32 H 0.11 2.70 8.13 -2.39 -0.02 2.68 16 33 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 36 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 37 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -75.98 373.61 4.81 -71.17 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 1.04 Total: 3.92 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 4.36 Total: -4.17 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.28 Total: -54.71 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -2.81 Total: -60.81 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -75.98 4.81 -71.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838420907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.877 kcal (2) G-P(sol) polarization free energy of solvation -75.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds