Wall clock time and date at job start Tue Mar 31 2020 16:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53007 * 109.46824 * 2 1 4 4 H 1.08995 * 109.47227 * 54.37654 * 3 2 1 5 5 C 1.50698 * 109.46490 * 174.37414 * 3 2 1 6 6 H 1.07999 * 120.00215 * 114.48885 * 5 3 2 7 7 C 1.37887 * 120.00201 * 294.48198 * 5 3 2 8 8 N 1.31511 * 120.00238 * 163.25891 * 7 5 3 9 9 Si 1.86799 * 119.99724 * 343.25805 * 7 5 3 10 10 H 1.48502 * 109.47125 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47482 * 299.99875 * 9 7 5 12 12 H 1.48502 * 109.47201 * 60.00138 * 9 7 5 13 13 O 1.45192 * 109.47187 * 294.37032 * 3 2 1 14 14 C 1.34232 * 117.00028 * 90.00443 * 13 3 2 15 15 O 1.20826 * 119.99657 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00150 * 179.97438 * 14 13 3 17 17 C 1.50708 * 109.47165 * 180.02562 * 16 14 13 18 18 C 1.38247 * 119.92989 * 90.00027 * 17 16 14 19 19 C 1.38237 * 120.14251 * 179.97438 * 18 17 16 20 20 C 1.38546 * 120.02890 * 359.97438 * 19 18 17 21 21 C 1.39267 * 119.82512 * 0.02562 * 20 19 18 22 22 C 1.38235 * 119.92430 * 269.71946 * 17 16 14 23 23 O 1.36506 * 108.63561 * 179.97438 * 21 20 19 24 24 C 1.43994 * 105.48551 * 342.72362 * 23 21 20 25 25 F 1.39892 * 110.56980 * 268.55195 * 24 23 21 26 26 F 1.39904 * 110.69463 * 145.74309 * 24 23 21 27 27 O 1.36503 * 131.53039 * 180.02562 * 20 19 18 28 28 H 1.08989 * 109.47102 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46951 * 300.00087 * 1 2 3 30 30 H 1.09002 * 109.46869 * 59.99626 * 1 2 3 31 31 H 1.08997 * 109.47010 * 240.00188 * 2 1 3 32 32 H 1.08993 * 109.47064 * 119.99803 * 2 1 3 33 33 H 0.96999 * 119.99731 * 354.55933 * 8 7 5 34 34 H 1.09003 * 109.47335 * 299.99672 * 16 14 13 35 35 H 1.08999 * 109.47218 * 59.99801 * 16 14 13 36 36 H 1.08003 * 119.92636 * 359.97438 * 18 17 16 37 37 H 1.07998 * 119.98094 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.98909 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5968 1.9846 0.8353 5 6 3.5406 1.4448 0.1393 6 1 4.1576 1.8052 -0.6705 7 6 4.1259 0.9867 1.3007 8 7 5.4038 0.6764 1.3150 9 14 3.1036 0.8069 2.8537 10 1 3.9611 0.2994 3.9548 11 1 2.5416 2.1283 3.2323 12 1 1.9952 -0.1506 2.6087 13 8 1.6688 2.0872 -1.2469 14 6 0.4859 2.7209 -1.2767 15 8 -0.2163 2.7360 -0.2935 16 6 0.0336 3.4134 -2.5364 17 6 -1.3166 4.0424 -2.3068 18 6 -1.4023 5.3400 -1.8377 19 6 -2.6384 5.9214 -1.6260 20 6 -3.7953 5.2043 -1.8844 21 6 -3.7089 3.8971 -2.3570 22 6 -2.4667 3.3225 -2.5712 23 8 -4.9729 3.4117 -2.5308 24 6 -5.8289 4.2886 -1.7747 25 9 -5.9991 3.8066 -0.4725 26 9 -7.0674 4.4376 -2.4081 27 8 -5.1133 5.5381 -1.7628 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.9164 0.6941 0.4917 34 1 0.7534 4.1869 -2.8043 35 1 -0.0367 2.6864 -3.3455 36 1 -0.5014 5.9007 -1.6361 37 1 -2.7023 6.9352 -1.2591 38 1 -2.3968 2.3104 -2.9416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845529456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:17 Heat of formation + Delta-G solvation = -231.122777 kcal Electronic energy + Delta-G solvation = -27933.874631 eV Core-core repulsion = 23378.236727 eV Total energy + Delta-G solvation = -4555.637904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.100 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.79338 -48.24895 -42.55826 -40.09449 -38.42706 -37.30937 -36.03969 -33.65727 -32.59926 -31.90648 -30.85960 -28.23115 -27.27607 -25.48644 -23.64340 -23.32126 -22.49342 -21.26024 -19.71461 -19.56257 -19.13269 -18.99013 -17.93321 -17.67019 -17.06000 -16.27768 -16.14536 -15.68045 -15.54487 -15.05482 -14.97006 -14.62598 -14.46569 -14.45460 -14.21718 -14.20800 -13.85349 -13.51622 -13.32271 -12.95921 -12.73858 -12.60251 -12.42714 -12.13296 -11.89999 -11.67229 -11.51800 -11.34180 -10.93399 -10.58613 -10.08305 -9.97756 -9.68647 -9.58691 -9.28815 -8.87204 -8.76731 -8.48406 -6.68007 -4.30331 0.56534 0.76578 1.33520 1.85750 2.73419 3.01084 3.29237 3.36567 3.49658 3.52643 3.62670 3.67137 3.85998 4.31471 4.34010 4.40972 4.50477 4.78144 4.93390 5.03305 5.17977 5.32986 5.38950 5.53731 5.59258 5.70549 5.80256 5.85267 5.91836 6.02722 6.08471 6.39507 6.45128 6.58151 6.73166 6.77251 7.12350 7.33046 7.76232 8.19278 8.39897 8.77648 9.36764 10.73158 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.002888 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.083510 B = 9693.848978 C =10067.415345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.202 3.798 4 H 0.040 0.960 5 C -0.608 4.608 6 H 0.069 0.931 7 C 0.043 3.957 8 N -0.892 5.892 9 Si 1.030 2.970 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.269 1.269 13 O -0.343 6.343 14 C 0.450 3.550 15 O -0.510 6.510 16 C -0.078 4.078 17 C -0.045 4.045 18 C -0.081 4.081 19 C -0.078 4.078 20 C 0.022 3.978 21 C 0.026 3.974 22 C -0.065 4.065 23 O -0.287 6.287 24 C 0.570 3.430 25 F -0.153 7.153 26 F -0.119 7.119 27 O -0.288 6.288 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.273 0.727 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.385 8.627 -9.274 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C 0.148 3.852 4 H 0.057 0.943 5 C -0.646 4.646 6 H 0.087 0.913 7 C -0.164 4.164 8 N -0.525 5.525 9 Si 0.857 3.143 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.195 1.195 13 O -0.258 6.258 14 C 0.292 3.708 15 O -0.400 6.400 16 C -0.116 4.116 17 C -0.046 4.046 18 C -0.099 4.099 19 C -0.097 4.097 20 C -0.022 4.022 21 C -0.017 4.017 22 C -0.084 4.084 23 O -0.207 6.207 24 C 0.461 3.539 25 F -0.135 7.135 26 F -0.100 7.100 27 O -0.208 6.208 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.686 8.217 -7.424 21.720 hybrid contribution -0.697 0.240 -1.453 1.629 sum -19.383 8.457 -8.876 22.935 Atomic orbital electron populations 1.21899 0.97371 0.99843 1.01441 1.22448 0.93825 0.99437 1.02945 1.20937 0.96457 0.88132 0.79644 0.94274 1.21941 0.88733 1.48728 1.05156 0.91262 1.25632 0.97090 0.92500 1.01142 1.70845 1.08043 1.41962 1.31609 0.84275 0.75730 0.77883 0.76415 1.20435 1.20434 1.19513 1.86529 1.34074 1.62413 1.42834 1.23116 0.80975 0.77276 0.89389 1.90645 1.54779 1.58162 1.36380 1.20300 0.93648 1.01538 0.96103 1.19161 0.93264 0.93806 0.98338 1.20966 0.97072 0.94639 0.97255 1.20078 0.87653 1.01018 1.00915 1.19572 0.83531 0.94053 1.05007 1.19416 0.85092 0.92532 1.04699 1.19927 0.86718 1.00526 1.01199 1.87616 1.15839 1.51298 1.65923 1.21882 0.79251 0.77226 0.75521 1.93284 1.95410 1.87415 1.37380 1.93241 1.40170 1.94741 1.81884 1.87607 1.16653 1.26985 1.89564 0.94072 0.92684 0.94010 0.92006 0.90345 0.91727 0.86225 0.86615 0.83383 0.83665 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.58 37.16 0.32 -2.49 16 2 C -0.15 -3.25 5.32 -26.72 -0.14 -3.39 16 3 C 0.20 4.84 1.83 -27.88 -0.05 4.79 16 4 H 0.04 0.99 5.83 -51.93 -0.30 0.68 16 5 C -0.61 -16.75 9.17 -34.44 -0.32 -17.07 16 6 H 0.07 2.05 8.06 -52.49 -0.42 1.62 16 7 C 0.04 1.20 5.31 -17.82 -0.09 1.10 16 8 N -0.89 -26.30 13.69 55.43 0.76 -25.54 16 9 Si 1.03 24.36 26.28 -169.99 -4.47 19.89 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -5.88 5.69 56.52 0.32 -5.56 16 13 O -0.34 -7.23 9.81 -39.26 -0.39 -7.62 16 14 C 0.45 7.79 6.43 36.00 0.23 8.02 16 15 O -0.51 -10.05 13.18 -18.75 -0.25 -10.29 16 16 C -0.08 -0.87 5.94 -29.03 -0.17 -1.05 16 17 C -0.05 -0.50 4.37 -104.62 -0.46 -0.95 16 18 C -0.08 -0.80 9.69 -39.58 -0.38 -1.18 16 19 C -0.08 -0.77 10.06 -39.47 -0.40 -1.16 16 20 C 0.02 0.26 7.15 -39.09 -0.28 -0.02 16 21 C 0.03 0.32 7.15 -39.09 -0.28 0.04 16 22 C -0.07 -0.74 9.71 -39.47 -0.38 -1.12 16 23 O -0.29 -3.63 11.35 -45.71 -0.52 -4.15 16 24 C 0.57 6.82 3.69 101.05 0.37 7.19 16 25 F -0.15 -1.91 17.57 2.25 0.04 -1.87 16 26 F -0.12 -1.30 17.57 2.25 0.04 -1.26 16 27 O -0.29 -3.50 11.35 -45.70 -0.52 -4.01 16 28 H 0.04 0.68 8.14 -51.94 -0.42 0.26 16 29 H 0.05 1.08 7.83 -51.93 -0.41 0.68 16 30 H 0.04 0.75 6.04 -51.93 -0.31 0.44 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.77 4.77 -51.93 -0.25 1.53 16 33 H 0.27 7.95 8.73 -40.82 -0.36 7.60 16 34 H 0.12 1.05 8.08 -51.93 -0.42 0.63 16 35 H 0.12 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -31.40 332.98 -6.19 -37.59 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -3.88 Total: -0.47 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.03 Total: -7.28 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.76 Total: -25.54 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.67 Total: -26.08 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -4.47 Total: 19.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.40 -6.19 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845529456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.530 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds