Wall clock time and date at job start Tue Mar 31 2020 16:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53007 * 109.46824 * 2 1 4 4 H 1.08995 * 109.47227 * 54.37654 * 3 2 1 5 5 C 1.50698 * 109.46490 * 174.37414 * 3 2 1 6 6 H 1.07999 * 120.00215 * 114.48885 * 5 3 2 7 7 C 1.37887 * 120.00201 * 294.48198 * 5 3 2 8 8 N 1.31511 * 120.00238 * 163.25891 * 7 5 3 9 9 Si 1.86799 * 119.99724 * 343.25805 * 7 5 3 10 10 H 1.48502 * 109.47125 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47482 * 299.99875 * 9 7 5 12 12 H 1.48502 * 109.47201 * 60.00138 * 9 7 5 13 13 O 1.45192 * 109.47187 * 294.37032 * 3 2 1 14 14 C 1.34232 * 117.00028 * 90.00443 * 13 3 2 15 15 O 1.20826 * 119.99657 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00150 * 179.97438 * 14 13 3 17 17 C 1.50708 * 109.47165 * 180.02562 * 16 14 13 18 18 C 1.38247 * 119.92989 * 90.00027 * 17 16 14 19 19 C 1.38237 * 120.14251 * 179.97438 * 18 17 16 20 20 C 1.38546 * 120.02890 * 359.97438 * 19 18 17 21 21 C 1.39267 * 119.82512 * 0.02562 * 20 19 18 22 22 C 1.38235 * 119.92430 * 269.71946 * 17 16 14 23 23 O 1.36506 * 108.63561 * 179.97438 * 21 20 19 24 24 C 1.43994 * 105.48551 * 342.72362 * 23 21 20 25 25 F 1.39892 * 110.56980 * 268.55195 * 24 23 21 26 26 F 1.39904 * 110.69463 * 145.74309 * 24 23 21 27 27 O 1.36503 * 131.53039 * 180.02562 * 20 19 18 28 28 H 1.08989 * 109.47102 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46951 * 300.00087 * 1 2 3 30 30 H 1.09002 * 109.46869 * 59.99626 * 1 2 3 31 31 H 1.08997 * 109.47010 * 240.00188 * 2 1 3 32 32 H 1.08993 * 109.47064 * 119.99803 * 2 1 3 33 33 H 0.96999 * 119.99731 * 354.55933 * 8 7 5 34 34 H 1.09003 * 109.47335 * 299.99672 * 16 14 13 35 35 H 1.08999 * 109.47218 * 59.99801 * 16 14 13 36 36 H 1.08003 * 119.92636 * 359.97438 * 18 17 16 37 37 H 1.07998 * 119.98094 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.98909 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5968 1.9846 0.8353 5 6 3.5406 1.4448 0.1393 6 1 4.1576 1.8052 -0.6705 7 6 4.1259 0.9867 1.3007 8 7 5.4038 0.6764 1.3150 9 14 3.1036 0.8069 2.8537 10 1 3.9611 0.2994 3.9548 11 1 2.5416 2.1283 3.2323 12 1 1.9952 -0.1506 2.6087 13 8 1.6688 2.0872 -1.2469 14 6 0.4859 2.7209 -1.2767 15 8 -0.2163 2.7360 -0.2935 16 6 0.0336 3.4134 -2.5364 17 6 -1.3166 4.0424 -2.3068 18 6 -1.4023 5.3400 -1.8377 19 6 -2.6384 5.9214 -1.6260 20 6 -3.7953 5.2043 -1.8844 21 6 -3.7089 3.8971 -2.3570 22 6 -2.4667 3.3225 -2.5712 23 8 -4.9729 3.4117 -2.5308 24 6 -5.8289 4.2886 -1.7747 25 9 -5.9991 3.8066 -0.4725 26 9 -7.0674 4.4376 -2.4081 27 8 -5.1133 5.5381 -1.7628 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.9164 0.6941 0.4917 34 1 0.7534 4.1869 -2.8043 35 1 -0.0367 2.6864 -3.3455 36 1 -0.5014 5.9007 -1.6361 37 1 -2.7023 6.9352 -1.2591 38 1 -2.3968 2.3104 -2.9416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845529456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:17 Heat of formation + Delta-G solvation = -249.608902 kcal Electronic energy + Delta-G solvation = -27934.676250 eV Core-core repulsion = 23378.236727 eV Total energy + Delta-G solvation = -4556.439523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.100 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.70619 -49.16552 -43.42884 -41.50654 -39.39028 -38.20929 -37.58921 -35.51002 -33.95713 -33.37963 -31.68150 -29.68176 -28.63323 -26.40382 -24.70097 -24.45209 -24.00849 -22.66554 -21.30765 -20.47652 -20.03127 -20.00265 -19.74833 -18.62482 -18.60161 -17.45191 -17.14829 -17.03653 -16.60682 -16.03368 -15.87628 -15.81560 -15.51935 -15.38772 -15.23336 -15.13194 -15.11826 -14.76854 -14.68694 -14.51137 -14.42186 -14.17022 -13.47292 -13.33288 -13.03387 -12.94377 -12.79620 -12.63865 -12.41215 -12.31107 -11.89489 -11.55621 -11.48882 -11.20459 -10.80472 -10.60864 -10.09913 -9.63719 -8.89540 -6.52488 -0.29323 -0.03732 0.44754 0.98273 1.38689 1.42284 1.46401 1.65968 1.96752 2.38125 2.49483 2.63480 2.77336 2.90803 3.04021 3.43170 3.54139 3.73979 3.97685 4.03527 4.13710 4.20776 4.26757 4.40554 4.40943 4.58745 4.63566 4.74410 4.80916 4.87833 5.02264 5.03131 5.09074 5.13809 5.28288 5.42682 5.53663 5.64352 5.90556 6.02834 6.43481 6.98764 7.24444 8.51111 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.002888 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.083510 B = 9693.848978 C =10067.415345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.146 4.146 3 C 0.204 3.796 4 H 0.030 0.970 5 C -0.615 4.615 6 H 0.034 0.966 7 C 0.000 4.000 8 N -0.921 5.921 9 Si 1.064 2.936 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.240 1.240 13 O -0.358 6.358 14 C 0.446 3.554 15 O -0.534 6.534 16 C -0.066 4.066 17 C -0.054 4.054 18 C -0.077 4.077 19 C -0.075 4.075 20 C 0.007 3.993 21 C 0.004 3.996 22 C -0.069 4.069 23 O -0.296 6.296 24 C 0.570 3.430 25 F -0.159 7.159 26 F -0.115 7.115 27 O -0.293 6.293 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.260 0.740 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.896 9.194 -9.546 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.184 4.184 3 C 0.150 3.850 4 H 0.048 0.952 5 C -0.653 4.653 6 H 0.052 0.948 7 C -0.200 4.200 8 N -0.555 5.555 9 Si 0.885 3.115 10 H -0.203 1.203 11 H -0.194 1.194 12 H -0.164 1.164 13 O -0.275 6.275 14 C 0.290 3.710 15 O -0.424 6.424 16 C -0.103 4.103 17 C -0.055 4.055 18 C -0.095 4.095 19 C -0.093 4.093 20 C -0.037 4.037 21 C -0.039 4.039 22 C -0.087 4.087 23 O -0.216 6.216 24 C 0.461 3.539 25 F -0.141 7.141 26 F -0.096 7.096 27 O -0.212 6.212 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.190 0.810 37 H 0.189 0.811 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.215 8.794 -7.730 23.361 hybrid contribution -0.218 0.157 -1.471 1.495 sum -20.434 8.951 -9.201 24.131 Atomic orbital electron populations 1.21802 0.94832 1.01591 1.01385 1.22328 0.96008 0.97591 1.02481 1.20588 0.93932 0.89667 0.80820 0.95220 1.22101 0.91003 1.48014 1.04140 0.94754 1.26889 0.97259 0.91734 1.04156 1.70946 1.09176 1.44378 1.31044 0.83859 0.75433 0.79092 0.73152 1.20254 1.19418 1.16401 1.86506 1.36541 1.63259 1.41156 1.24256 0.79262 0.76292 0.91177 1.90635 1.54986 1.58875 1.37934 1.20422 0.94108 1.02436 0.93301 1.19235 0.92885 0.94367 0.98997 1.21335 0.97964 0.94405 0.95809 1.20442 0.86885 1.02026 0.99923 1.19928 0.83796 0.94358 1.05586 1.19657 0.85205 0.93125 1.05952 1.20140 0.86517 1.01142 1.00928 1.87585 1.16276 1.51637 1.66111 1.21888 0.79396 0.77253 0.75347 1.93268 1.95450 1.87531 1.37805 1.93247 1.39850 1.94716 1.81744 1.87587 1.17038 1.26952 1.89667 0.91412 0.93443 0.93356 0.92118 0.91229 0.93031 0.83297 0.83841 0.80968 0.81076 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 8.58 71.99 0.62 -4.28 16 2 C -0.15 -6.16 5.32 30.60 0.16 -6.00 16 3 C 0.20 9.65 1.83 29.85 0.05 9.71 16 4 H 0.03 1.47 5.83 -2.39 -0.01 1.46 16 5 C -0.62 -34.45 9.17 25.60 0.23 -34.21 16 6 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 7 C 0.00 0.02 5.31 84.66 0.45 0.47 16 8 N -0.92 -55.54 13.69 21.45 0.29 -55.24 16 9 Si 1.06 48.46 26.28 68.60 1.80 50.26 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.24 -9.74 5.69 99.48 0.57 -9.17 16 13 O -0.36 -14.69 9.81 -51.44 -0.50 -15.20 16 14 C 0.45 14.41 6.43 71.23 0.46 14.87 16 15 O -0.53 -19.93 13.18 21.96 0.29 -19.64 16 16 C -0.07 -1.24 5.94 29.10 0.17 -1.07 16 17 C -0.05 -1.03 4.37 -19.86 -0.09 -1.12 16 18 C -0.08 -1.26 9.69 22.27 0.22 -1.05 16 19 C -0.07 -1.26 10.06 22.34 0.22 -1.03 16 20 C 0.01 0.15 7.15 22.59 0.16 0.31 16 21 C 0.00 0.09 7.15 22.59 0.16 0.25 16 22 C -0.07 -1.41 9.71 22.34 0.22 -1.20 16 23 O -0.30 -7.28 11.35 -76.13 -0.86 -8.14 16 24 C 0.57 13.25 3.69 113.37 0.42 13.67 16 25 F -0.16 -3.87 17.57 44.97 0.79 -3.08 16 26 F -0.11 -2.41 17.57 44.97 0.79 -1.62 16 27 O -0.29 -6.79 11.35 -76.08 -0.86 -7.65 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.74 7.83 -2.38 -0.02 1.72 16 30 H 0.05 1.61 6.04 -2.39 -0.01 1.60 16 31 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.07 3.03 4.77 -2.39 -0.01 3.01 16 33 H 0.26 15.80 8.73 -92.71 -0.81 14.99 16 34 H 0.15 1.99 8.08 -2.39 -0.02 1.97 16 35 H 0.14 1.96 8.08 -2.39 -0.02 1.94 16 36 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -69.42 332.98 6.14 -63.28 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.94 Total: 7.72 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 3.46 Total: -10.68 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.29 Total: -55.24 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -1.94 Total: -50.63 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 1.58 Total: -4.70 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.80 Total: 50.26 kcal Total: -69.42 6.14 -63.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845529456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.328 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds