Wall clock time and date at job start Tue Mar 31 2020 15:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47279 * 2 1 4 4 C 1.38266 * 119.94733 * 89.99950 * 3 2 1 5 5 C 1.38140 * 120.06208 * 180.02562 * 4 3 2 6 6 C 1.38743 * 119.93705 * 0.02562 * 5 4 3 7 7 O 1.35908 * 120.05133 * 180.02562 * 6 5 4 8 8 C 1.34809 * 116.99663 * 94.13978 * 7 6 5 9 9 O 1.21532 * 120.00287 * 359.31781 * 8 7 6 10 10 C 1.47270 * 119.99634 * 179.31900 * 8 7 6 11 11 C 1.39747 * 120.22581 * 0.02562 * 10 8 7 12 12 C 1.37779 * 119.93604 * 179.97438 * 11 10 8 13 13 C 1.38678 * 120.38779 * 0.02663 * 12 11 10 14 14 C 1.37905 * 120.45404 * 359.97438 * 13 12 11 15 15 C 1.39113 * 120.05753 * 359.97438 * 14 13 12 16 16 S 1.76198 * 120.19509 * 180.02562 * 15 14 13 17 17 C 1.76201 * 100.00048 * 353.59889 * 16 15 14 18 18 H 1.08004 * 119.99874 * 354.32082 * 17 16 15 19 19 C 1.38811 * 119.99828 * 174.31076 * 17 16 15 20 20 N 1.31545 * 120.00359 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00073 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47016 * 89.99641 * 21 19 17 23 23 H 1.48494 * 109.47319 * 210.00054 * 21 19 17 24 24 H 1.48508 * 109.46794 * 330.00211 * 21 19 17 25 25 C 1.38739 * 119.89228 * 0.27592 * 6 5 4 26 26 C 1.38141 * 119.93939 * 359.42932 * 25 6 5 27 27 H 1.08996 * 109.47193 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46994 * 300.00045 * 1 2 3 29 29 H 1.08999 * 109.46930 * 60.00238 * 1 2 3 30 30 H 1.09001 * 109.47504 * 239.99826 * 2 1 3 31 31 H 1.09005 * 109.47303 * 119.99640 * 2 1 3 32 32 H 1.08002 * 119.97047 * 0.02562 * 4 3 2 33 33 H 1.07996 * 120.03070 * 179.97438 * 5 4 3 34 34 H 1.08003 * 120.03204 * 0.02562 * 11 10 8 35 35 H 1.07999 * 119.80311 * 180.30184 * 12 11 10 36 36 H 1.08002 * 119.77204 * 179.97438 * 13 12 11 37 37 H 1.07997 * 119.97352 * 180.02562 * 14 13 12 38 38 H 0.96998 * 120.00284 * 179.97438 * 20 19 17 39 39 H 1.08004 * 120.02951 * 179.72131 * 25 6 5 40 40 H 1.07996 * 119.97419 * 180.29320 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0716 1.1981 5 6 2.7225 3.3741 1.2008 6 6 2.9531 4.0295 -0.0001 7 8 3.4061 5.3109 -0.0001 8 6 4.7396 5.4885 -0.0879 9 8 5.4782 4.5253 -0.1498 10 6 5.3013 6.8497 -0.1086 11 6 4.4564 7.9605 -0.0370 12 6 4.9883 9.2313 -0.0564 13 6 6.3597 9.4165 -0.1471 14 6 7.2082 8.3317 -0.2187 15 6 6.6914 7.0403 -0.1995 16 16 7.7722 5.6518 -0.2900 17 6 9.3037 6.4743 -0.5777 18 1 9.3215 7.5426 -0.7354 19 6 10.4872 5.7493 -0.6015 20 7 10.4655 4.4482 -0.4087 21 14 12.1109 6.6214 -0.9058 22 1 12.6915 7.0531 0.3911 23 1 13.0511 5.6942 -1.5850 24 1 11.8806 7.8104 -1.7652 25 6 2.7155 3.3765 -1.2009 26 6 2.2613 2.0719 -1.1982 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0824 1.5610 2.1326 33 1 2.9016 3.8821 2.1369 34 1 3.3875 7.8230 0.0342 35 1 4.3338 10.0882 0.0040 36 1 6.7660 10.4171 -0.1619 37 1 8.2750 8.4849 -0.2888 38 1 11.2924 3.9416 -0.4256 39 1 2.8900 3.8862 -2.1370 40 1 2.0807 1.5615 -2.1326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857827960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:18 Heat of formation + Delta-G solvation = -31.621584 kcal Electronic energy + Delta-G solvation = -23990.354788 eV Core-core repulsion = 20440.350306 eV Total energy + Delta-G solvation = -3550.004482 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 4.64 seconds Orbital eigenvalues (eV) -40.83422 -38.97297 -37.89962 -36.28695 -33.71731 -32.85709 -31.01123 -30.90393 -30.38871 -28.81827 -25.92778 -24.81774 -23.28297 -22.87502 -22.06295 -21.34080 -20.32135 -18.28014 -17.70713 -17.16553 -16.38140 -15.95169 -15.74770 -15.21846 -14.75715 -14.64612 -14.26325 -14.12597 -13.80606 -13.77754 -13.40383 -13.35512 -13.03951 -12.88678 -12.65835 -12.28951 -11.81181 -11.68267 -11.61972 -11.29339 -11.25723 -11.14231 -11.10594 -10.99246 -10.43900 -10.41622 -10.25641 -9.85512 -9.60406 -8.96168 -8.82841 -8.55607 -8.45667 -8.25557 -6.68500 -6.56166 -4.28476 1.13387 1.30513 1.38169 1.96541 3.02288 3.07059 3.08569 3.12435 3.14685 3.31193 3.86007 3.97349 4.34466 4.63955 4.72772 4.85904 4.90591 5.02617 5.05113 5.13815 5.21187 5.34953 5.39009 5.42308 5.48485 5.55891 5.69212 5.72981 5.79207 5.97309 6.00174 6.03160 6.12733 6.26631 6.28514 6.45541 6.54094 6.55333 6.70072 6.80044 6.98780 7.05198 7.11988 7.36323 7.50780 8.06720 8.40940 8.90052 10.47330 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.003274 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.382958 B = 8549.718054 C =10234.857045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.105 4.105 5 C -0.117 4.117 6 C 0.094 3.906 7 O -0.302 6.302 8 C 0.493 3.507 9 O -0.467 6.467 10 C -0.166 4.166 11 C -0.038 4.038 12 C -0.190 4.190 13 C -0.067 4.067 14 C -0.155 4.155 15 C -0.055 4.055 16 S 0.187 5.813 17 C -0.595 4.595 18 H 0.094 0.906 19 C 0.084 3.916 20 N -0.855 5.855 21 Si 0.922 3.078 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.117 4.117 26 C -0.104 4.104 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.277 0.723 39 H 0.128 0.872 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 -1.781 1.013 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.123 4.123 5 C -0.135 4.135 6 C 0.053 3.947 7 O -0.220 6.220 8 C 0.339 3.661 9 O -0.353 6.353 10 C -0.179 4.179 11 C -0.058 4.058 12 C -0.215 4.215 13 C -0.090 4.090 14 C -0.180 4.180 15 C -0.174 4.174 16 S 0.453 5.547 17 C -0.741 4.741 18 H 0.112 0.888 19 C -0.128 4.128 20 N -0.487 5.487 21 Si 0.747 3.253 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.135 4.135 26 C -0.122 4.122 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.159 0.841 38 H 0.087 0.913 39 H 0.146 0.854 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.072 -3.775 1.077 16.545 hybrid contribution 1.300 1.920 -0.266 2.334 sum -14.772 -1.855 0.811 14.911 Atomic orbital electron populations 1.21752 0.94758 1.01588 1.02253 1.20535 0.96048 0.92545 1.03045 1.19928 0.99277 0.96365 0.93131 1.20845 0.99805 0.93893 0.97783 1.21252 1.00070 0.94732 0.97476 1.18486 0.99007 0.83886 0.93345 1.84641 1.25820 1.26292 1.85197 1.21568 0.79193 0.90558 0.74799 1.90876 1.57956 1.42008 1.44486 1.18193 0.92029 0.88956 1.18732 1.21105 0.98684 0.91740 0.94250 1.20719 0.95100 0.96314 1.09330 1.21168 0.93554 0.98166 0.96083 1.21397 1.01062 0.90930 1.04594 1.23066 0.96124 1.01355 0.96895 1.84704 0.95709 1.01126 1.73155 1.24030 0.94532 0.98540 1.57013 0.88842 1.25132 0.99742 0.94855 0.93042 1.69964 1.29376 1.06052 1.43350 0.86103 0.80796 0.79493 0.78943 1.19746 1.20377 1.19094 1.21305 0.99770 0.94911 0.97558 1.20852 0.99728 0.93868 0.97797 0.92472 0.92537 0.92538 0.90917 0.90931 0.85554 0.85320 0.85794 0.86665 0.86695 0.84052 0.91336 0.85376 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.08 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.09 -1.02 5.14 -104.60 -0.54 -1.55 16 4 C -0.11 -1.29 9.69 -39.61 -0.38 -1.67 16 5 C -0.12 -1.69 9.99 -39.43 -0.39 -2.09 16 6 C 0.09 1.54 4.92 -39.21 -0.19 1.35 16 7 O -0.30 -5.37 9.27 -25.01 -0.23 -5.61 16 8 C 0.49 10.18 7.82 34.40 0.27 10.45 16 9 O -0.47 -11.05 13.55 -19.29 -0.26 -11.31 16 10 C -0.17 -3.38 5.89 -104.77 -0.62 -3.99 16 11 C -0.04 -0.64 9.61 -39.19 -0.38 -1.02 16 12 C -0.19 -2.95 10.02 -39.59 -0.40 -3.34 16 13 C -0.07 -1.12 10.02 -39.54 -0.40 -1.52 16 14 C -0.16 -3.16 9.22 -39.38 -0.36 -3.53 16 15 C -0.05 -1.24 6.15 -38.36 -0.24 -1.47 16 16 S 0.19 4.95 18.56 -107.50 -2.00 2.95 16 17 C -0.59 -16.03 9.00 30.94 0.28 -15.75 16 18 H 0.09 2.37 4.97 -52.48 -0.26 2.11 16 19 C 0.08 2.25 5.49 -17.46 -0.10 2.15 16 20 N -0.86 -24.21 13.22 55.49 0.73 -23.48 16 21 Si 0.92 20.23 29.55 -169.99 -5.02 15.21 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.12 -1.73 9.99 -39.43 -0.39 -2.12 16 26 C -0.10 -1.30 9.69 -39.60 -0.38 -1.68 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.12 1.78 7.61 -52.48 -0.40 1.38 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.14 2.97 5.02 -52.49 -0.26 2.70 16 38 H 0.28 7.23 8.31 -40.82 -0.34 6.90 16 39 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -30.76 358.94 -10.09 -40.85 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.70 Total: 3.39 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -4.02 Total: -27.42 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.73 Total: -23.48 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.49 Total: -16.92 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -2.00 Total: 2.95 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.76 -10.09 -40.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857827960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.230 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.64 seconds