Wall clock time and date at job start Tue Mar 31 2020 15:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47279 * 2 1 4 4 C 1.38266 * 119.94733 * 89.99950 * 3 2 1 5 5 C 1.38140 * 120.06208 * 180.02562 * 4 3 2 6 6 C 1.38743 * 119.93705 * 0.02562 * 5 4 3 7 7 O 1.35908 * 120.05133 * 180.02562 * 6 5 4 8 8 C 1.34809 * 116.99663 * 94.13978 * 7 6 5 9 9 O 1.21532 * 120.00287 * 359.31781 * 8 7 6 10 10 C 1.47270 * 119.99634 * 179.31900 * 8 7 6 11 11 C 1.39747 * 120.22581 * 0.02562 * 10 8 7 12 12 C 1.37779 * 119.93604 * 179.97438 * 11 10 8 13 13 C 1.38678 * 120.38779 * 0.02663 * 12 11 10 14 14 C 1.37905 * 120.45404 * 359.97438 * 13 12 11 15 15 C 1.39113 * 120.05753 * 359.97438 * 14 13 12 16 16 S 1.76198 * 120.19509 * 180.02562 * 15 14 13 17 17 C 1.76201 * 100.00048 * 353.59889 * 16 15 14 18 18 H 1.08004 * 119.99874 * 354.32082 * 17 16 15 19 19 C 1.38811 * 119.99828 * 174.31076 * 17 16 15 20 20 N 1.31545 * 120.00359 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00073 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47016 * 89.99641 * 21 19 17 23 23 H 1.48494 * 109.47319 * 210.00054 * 21 19 17 24 24 H 1.48508 * 109.46794 * 330.00211 * 21 19 17 25 25 C 1.38739 * 119.89228 * 0.27592 * 6 5 4 26 26 C 1.38141 * 119.93939 * 359.42932 * 25 6 5 27 27 H 1.08996 * 109.47193 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46994 * 300.00045 * 1 2 3 29 29 H 1.08999 * 109.46930 * 60.00238 * 1 2 3 30 30 H 1.09001 * 109.47504 * 239.99826 * 2 1 3 31 31 H 1.09005 * 109.47303 * 119.99640 * 2 1 3 32 32 H 1.08002 * 119.97047 * 0.02562 * 4 3 2 33 33 H 1.07996 * 120.03070 * 179.97438 * 5 4 3 34 34 H 1.08003 * 120.03204 * 0.02562 * 11 10 8 35 35 H 1.07999 * 119.80311 * 180.30184 * 12 11 10 36 36 H 1.08002 * 119.77204 * 179.97438 * 13 12 11 37 37 H 1.07997 * 119.97352 * 180.02562 * 14 13 12 38 38 H 0.96998 * 120.00284 * 179.97438 * 20 19 17 39 39 H 1.08004 * 120.02951 * 179.72131 * 25 6 5 40 40 H 1.07996 * 119.97419 * 180.29320 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0716 1.1981 5 6 2.7225 3.3741 1.2008 6 6 2.9531 4.0295 -0.0001 7 8 3.4061 5.3109 -0.0001 8 6 4.7396 5.4885 -0.0879 9 8 5.4782 4.5253 -0.1498 10 6 5.3013 6.8497 -0.1086 11 6 4.4564 7.9605 -0.0370 12 6 4.9883 9.2313 -0.0564 13 6 6.3597 9.4165 -0.1471 14 6 7.2082 8.3317 -0.2187 15 6 6.6914 7.0403 -0.1995 16 16 7.7722 5.6518 -0.2900 17 6 9.3037 6.4743 -0.5777 18 1 9.3215 7.5426 -0.7354 19 6 10.4872 5.7493 -0.6015 20 7 10.4655 4.4482 -0.4087 21 14 12.1109 6.6214 -0.9058 22 1 12.6915 7.0531 0.3911 23 1 13.0511 5.6942 -1.5850 24 1 11.8806 7.8104 -1.7652 25 6 2.7155 3.3765 -1.2009 26 6 2.2613 2.0719 -1.1982 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0824 1.5610 2.1326 33 1 2.9016 3.8821 2.1369 34 1 3.3875 7.8230 0.0342 35 1 4.3338 10.0882 0.0040 36 1 6.7660 10.4171 -0.1619 37 1 8.2750 8.4849 -0.2888 38 1 11.2924 3.9416 -0.4256 39 1 2.8900 3.8862 -2.1370 40 1 2.0807 1.5615 -2.1326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857827960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:17 Heat of formation + Delta-G solvation = -46.091882 kcal Electronic energy + Delta-G solvation = -23990.982268 eV Core-core repulsion = 20440.350306 eV Total energy + Delta-G solvation = -3550.631962 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.24721 -40.21922 -39.30448 -37.80693 -34.81840 -34.60333 -32.40350 -32.06931 -31.91292 -29.80460 -27.89850 -26.11512 -24.37793 -23.94199 -23.53256 -22.60732 -21.54463 -20.03935 -19.17234 -18.74730 -17.64472 -17.47910 -17.08457 -16.77014 -16.15006 -15.88293 -15.77962 -15.42004 -15.13628 -14.76967 -14.73136 -14.62436 -14.31399 -14.07285 -13.76462 -13.57486 -13.37955 -13.02238 -12.94920 -12.92999 -12.64472 -12.57326 -12.09103 -11.99662 -11.88493 -11.86369 -11.60895 -11.52557 -11.40925 -10.49848 -10.20695 -10.02922 -9.95627 -9.56082 -8.58587 -8.50496 -6.31869 -0.23058 -0.00940 0.31739 0.47059 1.23715 1.36479 1.42975 1.54447 1.56279 1.76545 2.17343 2.73719 2.80329 2.93035 3.15690 3.71190 3.79438 3.81172 3.92245 4.01530 4.22024 4.26889 4.34032 4.44346 4.54396 4.54481 4.57837 4.66172 4.72847 4.84394 4.93649 5.07282 5.10309 5.11163 5.24153 5.31630 5.33714 5.39268 5.41699 5.46135 5.50707 5.58721 5.61139 5.93448 6.03607 6.10989 6.86729 6.91194 8.55691 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.003274 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.382958 B = 8549.718054 C =10234.857045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.080 4.080 4 C -0.107 4.107 5 C -0.129 4.129 6 C 0.051 3.949 7 O -0.291 6.291 8 C 0.493 3.507 9 O -0.503 6.503 10 C -0.174 4.174 11 C -0.036 4.036 12 C -0.159 4.159 13 C -0.053 4.053 14 C -0.174 4.174 15 C -0.064 4.064 16 S 0.068 5.932 17 C -0.600 4.600 18 H 0.100 0.900 19 C 0.026 3.974 20 N -0.904 5.904 21 Si 0.996 3.004 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.256 1.256 25 C -0.132 4.132 26 C -0.108 4.108 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.129 0.871 38 H 0.277 0.723 39 H 0.127 0.873 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.014 0.301 1.159 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.080 4.080 4 C -0.125 4.125 5 C -0.147 4.147 6 C 0.010 3.990 7 O -0.207 6.207 8 C 0.340 3.660 9 O -0.392 6.392 10 C -0.186 4.186 11 C -0.055 4.055 12 C -0.182 4.182 13 C -0.074 4.074 14 C -0.199 4.199 15 C -0.182 4.182 16 S 0.328 5.672 17 C -0.747 4.747 18 H 0.118 0.882 19 C -0.180 4.180 20 N -0.538 5.538 21 Si 0.817 3.183 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.180 1.180 25 C -0.150 4.150 26 C -0.126 4.126 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.173 0.827 33 H 0.150 0.850 34 H 0.173 0.827 35 H 0.187 0.813 36 H 0.177 0.823 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.145 0.855 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.641 -1.622 1.230 18.752 hybrid contribution 1.617 1.398 -0.273 2.155 sum -17.024 -0.223 0.957 17.053 Atomic orbital electron populations 1.21733 0.93456 1.02697 1.02158 1.20629 0.97019 0.90361 1.04085 1.20385 0.97364 0.97770 0.92527 1.21219 0.98811 0.93012 0.99426 1.21457 1.00443 0.95811 0.97032 1.18869 1.01318 0.83994 0.94797 1.84627 1.23893 1.27656 1.84564 1.21839 0.80083 0.90458 0.73579 1.90868 1.59167 1.43241 1.45919 1.18544 0.91720 0.90213 1.18073 1.21541 0.99856 0.91157 0.92988 1.21382 0.95164 0.97207 1.04449 1.21668 0.93781 0.98797 0.93144 1.21473 1.01307 0.91243 1.05853 1.22966 0.96185 1.00501 0.98574 1.84892 0.98239 1.05341 1.78731 1.24216 0.94555 0.98688 1.57218 0.88214 1.26187 1.03544 0.95525 0.92787 1.70118 1.30161 1.07811 1.45715 0.84994 0.75823 0.78387 0.79135 1.18859 1.19914 1.17992 1.21471 1.00412 0.96064 0.97071 1.21202 0.98932 0.92983 0.99468 0.90792 0.92591 0.92722 0.90020 0.89855 0.82737 0.84966 0.82663 0.81312 0.82337 0.85388 0.91349 0.85535 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 71.98 0.71 -1.02 16 2 C -0.08 -1.25 6.06 29.85 0.18 -1.07 16 3 C -0.08 -1.76 5.14 -19.85 -0.10 -1.86 16 4 C -0.11 -2.51 9.69 22.25 0.22 -2.30 16 5 C -0.13 -3.79 9.99 22.37 0.22 -3.56 16 6 C 0.05 1.72 4.92 22.51 0.11 1.83 16 7 O -0.29 -10.56 9.27 -0.75 -0.01 -10.56 16 8 C 0.49 21.22 7.82 70.20 0.55 21.77 16 9 O -0.50 -25.62 13.55 19.73 0.27 -25.35 16 10 C -0.17 -7.13 5.89 -19.96 -0.12 -7.24 16 11 C -0.04 -1.10 9.61 22.53 0.22 -0.88 16 12 C -0.16 -4.05 10.02 22.27 0.22 -3.82 16 13 C -0.05 -1.54 10.02 22.30 0.22 -1.31 16 14 C -0.17 -7.02 9.22 22.40 0.21 -6.82 16 15 C -0.06 -3.01 6.15 23.06 0.14 -2.87 16 16 S 0.07 3.87 18.56 -56.49 -1.05 2.82 16 17 C -0.60 -34.29 9.00 67.96 0.61 -33.68 16 18 H 0.10 5.31 4.97 -2.91 -0.01 5.29 16 19 C 0.03 1.44 5.49 84.87 0.47 1.91 16 20 N -0.90 -54.51 13.22 21.65 0.29 -54.23 16 21 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 25 C -0.13 -3.99 9.99 22.37 0.22 -3.76 16 26 C -0.11 -2.62 9.69 22.26 0.22 -2.40 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 31 H 0.08 1.11 8.08 -2.38 -0.02 1.09 16 32 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.16 3.80 7.61 -2.91 -0.02 3.77 16 35 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 36 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 37 H 0.13 5.48 5.02 -2.91 -0.01 5.47 16 38 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 40 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -74.95 358.94 6.89 -68.06 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 1.06 Total: 21.41 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 4.30 Total: -47.10 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.29 Total: -54.23 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: 0.26 Total: -35.92 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.05 Total: 2.82 kcal Total: -74.95 6.89 -68.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857827960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.970 kcal (2) G-P(sol) polarization free energy of solvation -74.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds