Wall clock time and date at job start Tue Mar 31 2020 14:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48508 * 109.47114 * 270.00379 * 3 2 1 5 5 H 1.48497 * 109.47072 * 30.00511 * 3 2 1 6 6 H 1.48500 * 109.46981 * 150.00504 * 3 2 1 7 7 C 1.37871 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99919 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99951 * 179.97438 * 7 2 1 10 10 O 1.42901 * 109.47038 * 179.97438 * 9 7 2 11 11 C 1.42903 * 114.00323 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47367 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47574 * 64.99939 * 12 11 10 14 14 C 1.42899 * 114.00057 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46994 * 179.97438 * 14 13 12 16 16 O 1.45199 * 109.47103 * 64.99549 * 15 14 13 17 17 C 1.34724 * 116.99679 * 179.97438 * 16 15 14 18 18 O 1.21477 * 120.00240 * 0.02562 * 17 16 15 19 19 C 1.47661 * 119.99613 * 180.02562 * 17 16 15 20 20 C 1.39666 * 120.13814 * 0.24974 * 19 17 16 21 21 C 1.37881 * 119.86222 * 180.23321 * 20 19 17 22 22 C 1.38531 * 120.13454 * 359.51510 * 21 20 19 23 23 Cl 1.73598 * 119.86114 * 180.27825 * 22 21 20 24 24 C 1.38516 * 120.27481 * 0.25919 * 22 21 20 25 25 C 1.37884 * 120.13927 * 359.97438 * 24 22 21 26 26 H 0.97006 * 119.99814 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.47380 * 59.99566 * 9 7 2 28 28 H 1.08998 * 109.47161 * 299.99019 * 9 7 2 29 29 H 1.09000 * 109.46759 * 59.99426 * 11 10 9 30 30 H 1.09005 * 109.46399 * 300.00125 * 11 10 9 31 31 H 1.09004 * 109.47161 * 304.99695 * 12 11 10 32 32 H 1.09005 * 109.46821 * 184.99980 * 12 11 10 33 33 H 1.08992 * 109.47690 * 59.99817 * 14 13 12 34 34 H 1.09001 * 109.46998 * 299.99624 * 14 13 12 35 35 H 1.09005 * 109.47024 * 304.99710 * 15 14 13 36 36 H 1.09000 * 109.46974 * 184.99933 * 15 14 13 37 37 H 1.08004 * 120.07234 * 0.02562 * 20 19 17 38 38 H 1.08002 * 119.93580 * 179.79899 * 21 20 19 39 39 H 1.08000 * 119.93155 * 180.02562 * 24 22 21 40 40 H 1.07993 * 120.07063 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9878 -2.5413 -0.0010 11 6 5.4124 -2.6543 -0.0021 12 6 5.8068 -4.1325 -0.0025 13 8 5.3786 -4.7395 -1.2232 14 6 5.6992 -6.1283 -1.3255 15 6 5.1957 -6.6707 -2.6647 16 8 5.9174 -6.0288 -3.7489 17 6 5.5918 -6.3978 -5.0030 18 8 4.7284 -7.2325 -5.1858 19 6 6.2846 -5.7876 -6.1554 20 6 7.2814 -4.8315 -5.9484 21 6 7.9213 -4.2618 -7.0288 22 6 7.5843 -4.6433 -8.3172 23 17 8.3995 -3.9267 -9.6720 24 6 6.5998 -5.5945 -8.5288 25 6 5.9493 -6.1680 -7.4569 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6804 0.8887 28 1 3.8745 -0.6802 -0.8912 29 1 5.8158 -2.1703 0.8873 30 1 5.8143 -2.1710 -0.8927 31 1 5.3316 -4.6356 0.8397 32 1 6.8897 -4.2196 0.0862 33 1 5.2215 -6.6725 -0.5109 34 1 6.7798 -6.2572 -1.2641 35 1 4.1304 -6.4621 -2.7637 36 1 5.3605 -7.7473 -2.7056 37 1 7.5482 -4.5364 -4.9443 38 1 8.6900 -3.5199 -6.8701 39 1 6.3418 -5.8881 -9.5356 40 1 5.1822 -6.9097 -7.6232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861318894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:02 Heat of formation + Delta-G solvation = -157.946711 kcal Electronic energy + Delta-G solvation = -24139.016037 eV Core-core repulsion = 20138.347965 eV Total energy + Delta-G solvation = -4000.668072 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82926 -39.29645 -38.14713 -37.00306 -36.73806 -36.25483 -32.68061 -31.94918 -31.57445 -30.90216 -29.11327 -27.34132 -24.94887 -23.33927 -22.67491 -22.21557 -21.79577 -21.19890 -18.51716 -17.61342 -17.18834 -16.88381 -16.74094 -16.19230 -16.10229 -15.60919 -15.17820 -14.96627 -14.62748 -14.58360 -14.13239 -14.04576 -14.01906 -13.41579 -13.24629 -12.76805 -12.61392 -12.32858 -12.11570 -11.96896 -11.92773 -11.86142 -11.33882 -11.30476 -11.04325 -10.83223 -10.77173 -10.74841 -10.45225 -9.87233 -9.60486 -9.56324 -9.30240 -9.16589 -8.85007 -8.46229 -6.09802 -4.08696 0.11073 0.77982 1.57513 2.15327 2.36593 3.23691 3.25932 3.32445 3.33562 3.63677 4.22201 4.34435 4.35344 4.36720 4.59701 4.71836 4.73805 4.80206 4.96411 5.08621 5.12280 5.21377 5.28035 5.32165 5.43274 5.45952 5.49489 5.63189 5.65897 5.80282 5.81875 5.86927 6.06964 6.15143 6.19033 6.60259 7.00670 7.24465 7.50316 7.60904 8.02398 8.68021 9.02062 9.49333 11.03315 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010029 B = 0.002396 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.284283 B =11683.833982 C =13176.730585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.082 0.918 9 C 0.168 3.832 10 O -0.374 6.374 11 C 0.059 3.941 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.062 3.938 15 C 0.072 3.928 16 O -0.341 6.341 17 C 0.510 3.490 18 O -0.504 6.504 19 C -0.119 4.119 20 C -0.046 4.046 21 C -0.124 4.124 22 C -0.004 4.004 23 Cl -0.061 7.061 24 C -0.124 4.124 25 C -0.042 4.042 26 H 0.266 0.734 27 H 0.002 0.998 28 H -0.001 1.001 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.107 -13.578 -14.026 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.100 0.900 9 C 0.093 3.907 10 O -0.293 6.293 11 C -0.019 4.019 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.015 4.015 15 C -0.002 4.002 16 O -0.258 6.258 17 C 0.354 3.646 18 O -0.393 6.393 19 C -0.120 4.120 20 C -0.064 4.064 21 C -0.142 4.142 22 C -0.031 4.031 23 Cl -0.032 7.032 24 C -0.142 4.142 25 C -0.061 4.061 26 H 0.076 0.924 27 H 0.020 0.980 28 H 0.017 0.983 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 20.520 -13.694 -14.293 28.511 hybrid contribution 0.627 1.048 0.147 1.230 sum 21.147 -12.646 -14.146 28.411 Atomic orbital electron populations 1.69881 1.06057 1.27058 1.50428 1.24774 0.94818 0.98757 0.94683 0.86841 0.80303 0.83743 0.78796 1.19894 1.20795 1.19120 1.20892 0.88278 0.95335 1.51076 0.89965 1.20606 0.96245 0.79531 0.94295 1.87973 1.16909 1.29405 1.95018 1.22337 0.85807 0.93806 0.99927 1.22564 0.97355 0.93881 0.87010 1.88100 1.80869 1.21223 1.38528 1.22513 0.99774 0.84545 0.94701 1.23203 0.97664 0.96349 0.82983 1.86565 1.61010 1.63432 1.14754 1.21001 0.80577 0.79619 0.83376 1.90850 1.30606 1.31530 1.86358 1.19262 1.00055 1.01118 0.91588 1.21540 0.92262 0.92410 1.00179 1.21112 1.01617 1.01366 0.90132 1.21313 0.95984 0.96659 0.89156 1.98400 1.77998 1.82452 1.44372 1.21026 0.96067 0.96843 1.00273 1.21264 0.97465 0.97428 0.89918 0.92379 0.98006 0.98322 0.92796 0.93462 0.92480 0.92538 0.90760 0.92427 0.89541 0.89570 0.83092 0.83851 0.83839 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -15.73 9.99 -34.44 -0.34 -16.08 16 8 H 0.08 2.74 8.06 -52.48 -0.42 2.32 16 9 C 0.17 4.37 4.76 36.01 0.17 4.54 16 10 O -0.37 -8.96 10.29 -40.08 -0.41 -9.37 16 11 C 0.06 1.03 6.32 37.15 0.23 1.27 16 12 C 0.07 0.96 6.32 37.15 0.23 1.20 16 13 O -0.37 -5.80 10.28 -48.79 -0.50 -6.30 16 14 C 0.06 0.68 6.33 37.16 0.24 0.91 16 15 C 0.07 0.82 5.85 37.16 0.22 1.04 16 16 O -0.34 -4.29 9.44 -43.34 -0.41 -4.70 16 17 C 0.51 6.43 7.90 34.58 0.27 6.71 16 18 O -0.50 -7.39 16.14 -19.25 -0.31 -7.70 16 19 C -0.12 -1.23 5.87 -104.98 -0.62 -1.85 16 20 C -0.05 -0.40 9.61 -39.18 -0.38 -0.78 16 21 C -0.12 -0.96 9.81 -39.60 -0.39 -1.35 16 22 C 0.00 -0.03 6.33 -39.37 -0.25 -0.28 16 23 Cl -0.06 -0.46 28.95 -51.86 -1.50 -1.96 16 24 C -0.12 -0.94 9.81 -39.61 -0.39 -1.32 16 25 C -0.04 -0.38 9.59 -39.18 -0.38 -0.75 16 26 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.00 0.06 7.20 -51.93 -0.37 -0.32 16 28 H 0.00 -0.02 7.57 -51.93 -0.39 -0.42 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.15 1.21 7.61 -52.48 -0.40 0.81 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.15 1.21 7.65 -52.49 -0.40 0.81 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -35.54 368.87 -8.33 -43.87 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -5.38 Total: -4.38 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.47 Total: -4.71 kcal Atomic # 7 Polarization: -28.02 SS G_CDS: 0.77 Total: -27.24 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -1.63 Total: -28.07 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.54 -8.33 -43.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861318894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.081 kcal (2) G-P(sol) polarization free energy of solvation -35.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds