Wall clock time and date at job start Tue Mar 31 2020 14:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48508 * 109.47114 * 270.00379 * 3 2 1 5 5 H 1.48497 * 109.47072 * 30.00511 * 3 2 1 6 6 H 1.48500 * 109.46981 * 150.00504 * 3 2 1 7 7 C 1.37871 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99919 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99951 * 179.97438 * 7 2 1 10 10 O 1.42901 * 109.47038 * 179.97438 * 9 7 2 11 11 C 1.42903 * 114.00323 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47367 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47574 * 64.99939 * 12 11 10 14 14 C 1.42899 * 114.00057 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46994 * 179.97438 * 14 13 12 16 16 O 1.45199 * 109.47103 * 64.99549 * 15 14 13 17 17 C 1.34724 * 116.99679 * 179.97438 * 16 15 14 18 18 O 1.21477 * 120.00240 * 0.02562 * 17 16 15 19 19 C 1.47661 * 119.99613 * 180.02562 * 17 16 15 20 20 C 1.39666 * 120.13814 * 0.24974 * 19 17 16 21 21 C 1.37881 * 119.86222 * 180.23321 * 20 19 17 22 22 C 1.38531 * 120.13454 * 359.51510 * 21 20 19 23 23 Cl 1.73598 * 119.86114 * 180.27825 * 22 21 20 24 24 C 1.38516 * 120.27481 * 0.25919 * 22 21 20 25 25 C 1.37884 * 120.13927 * 359.97438 * 24 22 21 26 26 H 0.97006 * 119.99814 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.47380 * 59.99566 * 9 7 2 28 28 H 1.08998 * 109.47161 * 299.99019 * 9 7 2 29 29 H 1.09000 * 109.46759 * 59.99426 * 11 10 9 30 30 H 1.09005 * 109.46399 * 300.00125 * 11 10 9 31 31 H 1.09004 * 109.47161 * 304.99695 * 12 11 10 32 32 H 1.09005 * 109.46821 * 184.99980 * 12 11 10 33 33 H 1.08992 * 109.47690 * 59.99817 * 14 13 12 34 34 H 1.09001 * 109.46998 * 299.99624 * 14 13 12 35 35 H 1.09005 * 109.47024 * 304.99710 * 15 14 13 36 36 H 1.09000 * 109.46974 * 184.99933 * 15 14 13 37 37 H 1.08004 * 120.07234 * 0.02562 * 20 19 17 38 38 H 1.08002 * 119.93580 * 179.79899 * 21 20 19 39 39 H 1.08000 * 119.93155 * 180.02562 * 24 22 21 40 40 H 1.07993 * 120.07063 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9878 -2.5413 -0.0010 11 6 5.4124 -2.6543 -0.0021 12 6 5.8068 -4.1325 -0.0025 13 8 5.3786 -4.7395 -1.2232 14 6 5.6992 -6.1283 -1.3255 15 6 5.1957 -6.6707 -2.6647 16 8 5.9174 -6.0288 -3.7489 17 6 5.5918 -6.3978 -5.0030 18 8 4.7284 -7.2325 -5.1858 19 6 6.2846 -5.7876 -6.1554 20 6 7.2814 -4.8315 -5.9484 21 6 7.9213 -4.2618 -7.0288 22 6 7.5843 -4.6433 -8.3172 23 17 8.3995 -3.9267 -9.6720 24 6 6.5998 -5.5945 -8.5288 25 6 5.9493 -6.1680 -7.4569 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6804 0.8887 28 1 3.8745 -0.6802 -0.8912 29 1 5.8158 -2.1703 0.8873 30 1 5.8143 -2.1710 -0.8927 31 1 5.3316 -4.6356 0.8397 32 1 6.8897 -4.2196 0.0862 33 1 5.2215 -6.6725 -0.5109 34 1 6.7798 -6.2572 -1.2641 35 1 4.1304 -6.4621 -2.7637 36 1 5.3605 -7.7473 -2.7056 37 1 7.5482 -4.5364 -4.9443 38 1 8.6900 -3.5199 -6.8701 39 1 6.3418 -5.8881 -9.5356 40 1 5.1822 -6.9097 -7.6232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861318894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:01 Heat of formation + Delta-G solvation = -180.498683 kcal Electronic energy + Delta-G solvation = -24139.993964 eV Core-core repulsion = 20138.347965 eV Total energy + Delta-G solvation = -4001.645998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73438 -40.02766 -39.32978 -38.25845 -37.59076 -37.37210 -34.89374 -32.78869 -32.23483 -31.95099 -30.56573 -29.11691 -25.75939 -24.03419 -24.01066 -23.50090 -23.38368 -22.05131 -19.33022 -19.08861 -18.49798 -18.16340 -17.66450 -17.48049 -17.21433 -16.65659 -16.38118 -16.14871 -15.99933 -15.81703 -15.42903 -14.78612 -14.71261 -14.66167 -14.41450 -14.27913 -13.80908 -13.51102 -13.33885 -13.18079 -12.80393 -12.71083 -12.63171 -12.58430 -12.35237 -12.03399 -11.92628 -11.83395 -11.73930 -11.67831 -11.37074 -10.93761 -10.56303 -10.36073 -10.23573 -9.98022 -8.38143 -6.46582 -0.62705 0.14977 0.95076 1.28669 1.32846 1.36797 1.47590 1.49924 2.29267 2.52172 2.66888 2.94327 3.09188 3.45286 3.65494 3.76441 3.85098 4.06395 4.06792 4.15617 4.18369 4.25701 4.34881 4.48340 4.49742 4.52295 4.59690 4.63842 4.66918 4.84250 4.84896 4.91260 5.00545 5.01625 5.14344 5.26358 5.42676 5.51309 5.92327 6.27370 6.54881 6.57604 6.75731 7.18055 8.79302 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010029 B = 0.002396 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.284283 B =11683.833982 C =13176.730585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.241 1.241 7 C -0.548 4.548 8 H 0.026 0.974 9 C 0.179 3.821 10 O -0.407 6.407 11 C 0.045 3.955 12 C 0.070 3.930 13 O -0.409 6.409 14 C 0.061 3.939 15 C 0.066 3.934 16 O -0.346 6.346 17 C 0.508 3.492 18 O -0.535 6.535 19 C -0.140 4.140 20 C -0.046 4.046 21 C -0.122 4.122 22 C -0.007 4.007 23 Cl -0.054 7.054 24 C -0.120 4.120 25 C -0.047 4.047 26 H 0.273 0.727 27 H 0.018 0.982 28 H 0.008 0.992 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.319 -12.266 -14.263 30.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.164 1.164 7 C -0.586 4.586 8 H 0.044 0.956 9 C 0.104 3.896 10 O -0.327 6.327 11 C -0.032 4.032 12 C -0.006 4.006 13 O -0.329 6.329 14 C -0.015 4.015 15 C -0.007 4.007 16 O -0.262 6.262 17 C 0.354 3.646 18 O -0.426 6.426 19 C -0.142 4.142 20 C -0.065 4.065 21 C -0.140 4.140 22 C -0.034 4.034 23 Cl -0.025 7.025 24 C -0.138 4.138 25 C -0.065 4.065 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.026 0.974 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.175 0.825 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 23.760 -12.408 -14.523 30.486 hybrid contribution -0.384 0.524 0.172 0.672 sum 23.376 -11.884 -14.351 29.893 Atomic orbital electron populations 1.70046 1.08361 1.28840 1.51055 1.25912 0.95872 1.03625 0.93361 0.85557 0.79548 0.77124 0.79783 1.18545 1.19693 1.16421 1.21188 0.91167 0.93753 1.52478 0.95592 1.20316 0.93179 0.81047 0.95105 1.87921 1.21274 1.28188 1.95272 1.22797 0.82198 0.96870 1.01300 1.22644 0.99847 0.91525 0.86537 1.88039 1.81850 1.23664 1.39345 1.22733 1.01707 0.82531 0.94541 1.23343 0.96212 0.97839 0.83317 1.86564 1.60987 1.63640 1.15000 1.21471 0.80173 0.79117 0.83837 1.90822 1.32079 1.33044 1.86685 1.19323 1.01195 1.02417 0.91232 1.21621 0.91889 0.92026 1.00926 1.21331 1.01660 1.01346 0.89697 1.21471 0.95882 0.96511 0.89521 1.98406 1.77803 1.82288 1.43990 1.21238 0.95453 0.96253 1.00845 1.21361 0.97727 0.97656 0.89804 0.91768 0.96435 0.97420 0.90231 0.93076 0.92358 0.88030 0.89051 0.89494 0.92235 0.87175 0.82519 0.81852 0.81729 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.60 13.96 21.45 0.30 -60.30 16 2 C 0.01 0.60 5.47 84.65 0.46 1.07 16 3 Si 0.96 43.82 27.47 68.60 1.88 45.70 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 7 C -0.55 -34.42 9.99 25.60 0.26 -34.17 16 8 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 9 C 0.18 9.21 4.76 71.24 0.34 9.55 16 10 O -0.41 -19.55 10.29 -144.35 -1.49 -21.04 16 11 C 0.04 1.49 6.32 71.98 0.45 1.94 16 12 C 0.07 1.83 6.32 71.98 0.45 2.28 16 13 O -0.41 -12.51 10.28 -136.02 -1.40 -13.91 16 14 C 0.06 1.25 6.33 71.98 0.46 1.71 16 15 C 0.07 1.53 5.85 71.98 0.42 1.95 16 16 O -0.35 -8.73 9.44 -53.68 -0.51 -9.24 16 17 C 0.51 13.18 7.90 70.31 0.56 13.74 16 18 O -0.53 -16.38 16.14 19.91 0.32 -16.06 16 19 C -0.14 -2.91 5.87 -20.10 -0.12 -3.03 16 20 C -0.05 -0.78 9.61 22.53 0.22 -0.56 16 21 C -0.12 -1.69 9.81 22.26 0.22 -1.47 16 22 C -0.01 -0.10 6.33 22.41 0.14 0.04 16 23 Cl -0.05 -0.71 28.95 -2.72 -0.08 -0.79 16 24 C -0.12 -1.66 9.81 22.25 0.22 -1.44 16 25 C -0.05 -0.83 9.59 22.53 0.22 -0.61 16 26 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 27 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 28 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.16 2.38 7.61 -2.91 -0.02 2.35 16 38 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.15 2.50 7.65 -2.91 -0.02 2.47 16 Total: -1.00 -80.62 368.87 4.32 -76.31 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.99 Total: 8.32 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 4.29 Total: -9.01 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.30 Total: -60.30 kcal Atomic # 8 Polarization: -57.17 SS G_CDS: -3.07 Total: -60.24 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -80.62 4.32 -76.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861318894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.191 kcal (2) G-P(sol) polarization free energy of solvation -80.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds