Wall clock time and date at job start Tue Mar 31 2020 14:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48496 * 109.47198 * 269.99654 * 3 2 1 5 5 H 1.48505 * 109.47495 * 30.00044 * 3 2 1 6 6 H 1.48504 * 109.47226 * 149.99826 * 3 2 1 7 7 C 1.37877 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00212 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47160 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99709 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46864 * 179.97438 * 11 10 9 13 13 O 1.42906 * 109.47013 * 65.00204 * 12 11 10 14 14 C 1.42900 * 114.00027 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47078 * 179.97438 * 14 13 12 16 16 O 1.45208 * 109.47016 * 65.00284 * 15 14 13 17 17 C 1.34702 * 116.99810 * 179.97438 * 16 15 14 18 18 O 1.21472 * 120.00774 * 359.97438 * 17 16 15 19 19 C 1.47737 * 119.99935 * 180.02562 * 17 16 15 20 20 C 1.39651 * 120.13996 * 359.97313 * 19 17 16 21 21 C 1.37932 * 119.86941 * 179.97438 * 20 19 17 22 22 C 1.38361 * 120.16652 * 0.07152 * 21 20 19 23 23 C 1.38449 * 120.29471 * 359.97438 * 22 21 20 24 24 Cl 1.73597 * 119.94267 * 180.02562 * 23 22 21 25 25 C 1.38095 * 120.12397 * 359.97438 * 23 22 21 26 26 H 0.96997 * 119.99990 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47077 * 59.99802 * 9 7 2 28 28 H 1.09003 * 109.46610 * 299.99907 * 9 7 2 29 29 H 1.08998 * 109.46990 * 60.00625 * 11 10 9 30 30 H 1.08991 * 109.47218 * 299.99850 * 11 10 9 31 31 H 1.08996 * 109.46917 * 305.00481 * 12 11 10 32 32 H 1.08995 * 109.46696 * 185.00194 * 12 11 10 33 33 H 1.08999 * 109.46968 * 59.99928 * 14 13 12 34 34 H 1.09001 * 109.46897 * 300.00365 * 14 13 12 35 35 H 1.08994 * 109.47384 * 305.00273 * 15 14 13 36 36 H 1.08994 * 109.47107 * 184.99639 * 15 14 13 37 37 H 1.07992 * 120.06165 * 0.02562 * 20 19 17 38 38 H 1.07997 * 119.91159 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.85244 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.08786 * 179.75066 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6479 -5.9563 0.0030 13 8 3.3873 -5.8891 1.2242 14 6 4.4289 -6.8619 1.3273 15 6 5.1497 -6.6972 2.6666 16 8 4.2323 -7.0005 3.7506 17 6 4.7140 -6.9030 5.0047 18 8 5.8689 -6.5743 5.1881 19 6 3.8380 -7.1971 6.1574 20 6 2.5099 -7.5759 5.9501 21 6 1.6970 -7.8497 7.0304 22 6 2.1939 -7.7485 8.3177 23 6 3.5093 -7.3727 8.5311 24 17 4.1234 -7.2494 10.1501 25 6 4.3340 -7.0968 7.4584 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5566 0.8903 29 1 0.9453 -4.9831 -0.8878 30 1 0.9445 -4.9818 0.8922 31 1 3.3215 -5.7961 -0.8388 32 1 2.1819 -6.9375 -0.0860 33 1 5.1395 -6.7211 0.5128 34 1 3.9994 -7.8619 1.2658 35 1 5.5025 -5.6707 2.7656 36 1 5.9992 -7.3790 2.7083 37 1 2.1203 -7.6550 4.9460 38 1 0.6700 -8.1430 6.8708 39 1 1.5529 -7.9637 9.1599 40 1 5.3587 -6.7998 7.6256 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861318957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:34 Heat of formation + Delta-G solvation = -162.806143 kcal Electronic energy + Delta-G solvation = -24125.658064 eV Core-core repulsion = 20124.779272 eV Total energy + Delta-G solvation = -4000.878792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82297 -39.27451 -38.07298 -36.88999 -36.68683 -36.14802 -32.74701 -32.05372 -31.35959 -30.82799 -28.88628 -26.75459 -25.09237 -23.14612 -22.67804 -22.40645 -21.92482 -21.22614 -18.56322 -17.52508 -17.12664 -16.49045 -16.39152 -16.16138 -16.05419 -15.59275 -15.44727 -14.92464 -14.48159 -14.46238 -14.23925 -14.10952 -13.96802 -13.34511 -13.20815 -12.77518 -12.36685 -12.13861 -11.98647 -11.91034 -11.74450 -11.63348 -11.40416 -11.17601 -10.86496 -10.81269 -10.76341 -10.72209 -10.49745 -9.99209 -9.60381 -9.52381 -9.24685 -9.08058 -8.81557 -8.15509 -6.08960 -4.10188 0.20206 0.70571 1.60730 2.19241 2.41362 3.24867 3.32128 3.36985 3.43205 3.68604 4.21710 4.32275 4.36573 4.54509 4.66582 4.74476 4.81174 4.85794 4.96854 5.03145 5.15669 5.27587 5.30728 5.32919 5.39279 5.52318 5.57178 5.65973 5.77303 5.80802 5.99932 6.00765 6.16280 6.19781 6.21955 7.10735 7.30010 7.44968 7.51029 7.81968 8.17345 8.59738 9.03215 9.54496 11.02716 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010789 B = 0.002287 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.547506 B =12237.573393 C =13441.391064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.061 3.939 15 C 0.072 3.928 16 O -0.340 6.340 17 C 0.511 3.489 18 O -0.504 6.504 19 C -0.110 4.110 20 C -0.054 4.054 21 C -0.119 4.119 22 C -0.077 4.077 23 C -0.050 4.050 24 Cl -0.061 7.061 25 C -0.048 4.048 26 H 0.264 0.736 27 H 0.005 0.995 28 H 0.006 0.994 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 -22.310 13.893 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.015 4.015 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.016 4.016 15 C -0.002 4.002 16 O -0.256 6.256 17 C 0.355 3.645 18 O -0.393 6.393 19 C -0.112 4.112 20 C -0.072 4.072 21 C -0.137 4.137 22 C -0.095 4.095 23 C -0.076 4.076 24 Cl -0.032 7.032 25 C -0.067 4.067 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.653 -21.899 14.191 26.700 hybrid contribution 0.242 0.765 -0.143 0.815 sum 5.895 -21.134 14.048 26.053 Atomic orbital electron populations 1.69963 1.06094 1.27124 1.50721 1.24950 0.94989 0.99433 0.95184 0.86336 0.79728 0.82243 0.78197 1.20479 1.21068 1.19592 1.21062 0.94086 0.89362 1.50603 0.91558 1.20205 0.88785 0.83652 0.95338 1.87912 1.35189 1.12654 1.95162 1.22254 0.93690 0.85653 0.99853 1.22598 0.94070 0.97362 0.86778 1.88107 1.47083 1.54853 1.38659 1.22506 0.91383 0.93108 0.94580 1.23204 0.90878 1.03062 0.83011 1.86564 1.44378 1.79996 1.14659 1.20948 0.85978 0.74168 0.83380 1.90850 1.18565 1.43550 1.86349 1.19032 0.94435 1.06877 0.90816 1.21706 0.91760 0.92789 1.00923 1.21196 1.00790 1.00429 0.91259 1.21380 0.93383 0.96293 0.98477 1.20728 0.94655 1.05886 0.86373 1.98392 1.87650 1.96700 1.20453 1.21135 1.00682 0.95330 0.89547 0.92683 0.97768 0.97644 0.92955 0.93613 0.92660 0.92675 0.90831 0.92433 0.89604 0.89595 0.83333 0.83852 0.84170 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -15.46 9.43 -34.44 -0.32 -15.78 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.19 5.45 5.69 36.01 0.20 5.66 16 10 O -0.39 -9.70 10.29 -40.08 -0.41 -10.12 16 11 C 0.06 1.18 6.32 37.16 0.23 1.42 16 12 C 0.07 1.01 6.32 37.16 0.23 1.24 16 13 O -0.37 -5.96 10.28 -48.78 -0.50 -6.46 16 14 C 0.06 0.69 6.33 37.15 0.24 0.92 16 15 C 0.07 0.84 5.85 37.15 0.22 1.06 16 16 O -0.34 -4.36 9.44 -43.28 -0.41 -4.77 16 17 C 0.51 6.64 7.90 34.61 0.27 6.92 16 18 O -0.50 -7.60 16.14 -19.24 -0.31 -7.91 16 19 C -0.11 -1.19 5.87 -104.98 -0.62 -1.81 16 20 C -0.05 -0.47 9.62 -39.17 -0.38 -0.85 16 21 C -0.12 -0.82 10.03 -39.65 -0.40 -1.22 16 22 C -0.08 -0.55 9.82 -39.46 -0.39 -0.93 16 23 C -0.05 -0.44 6.31 -39.56 -0.25 -0.69 16 24 Cl -0.06 -0.51 28.95 -51.86 -1.50 -2.01 16 25 C -0.05 -0.48 9.38 -39.13 -0.37 -0.85 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.15 1.21 7.61 -52.49 -0.40 0.81 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 40 H 0.15 1.49 7.65 -52.49 -0.40 1.09 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -35.10 372.48 -8.64 -43.74 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -5.42 Total: -5.41 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -1.42 Total: -3.39 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.63 Total: -29.25 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.10 -8.64 -43.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861318957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.062 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds