Wall clock time and date at job start Tue Mar 31 2020 14:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48496 * 109.47198 * 269.99654 * 3 2 1 5 5 H 1.48505 * 109.47495 * 30.00044 * 3 2 1 6 6 H 1.48504 * 109.47226 * 149.99826 * 3 2 1 7 7 C 1.37877 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00212 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47160 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99709 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46864 * 179.97438 * 11 10 9 13 13 O 1.42906 * 109.47013 * 65.00204 * 12 11 10 14 14 C 1.42900 * 114.00027 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47078 * 179.97438 * 14 13 12 16 16 O 1.45208 * 109.47016 * 65.00284 * 15 14 13 17 17 C 1.34702 * 116.99810 * 179.97438 * 16 15 14 18 18 O 1.21472 * 120.00774 * 359.97438 * 17 16 15 19 19 C 1.47737 * 119.99935 * 180.02562 * 17 16 15 20 20 C 1.39651 * 120.13996 * 359.97313 * 19 17 16 21 21 C 1.37932 * 119.86941 * 179.97438 * 20 19 17 22 22 C 1.38361 * 120.16652 * 0.07152 * 21 20 19 23 23 C 1.38449 * 120.29471 * 359.97438 * 22 21 20 24 24 Cl 1.73597 * 119.94267 * 180.02562 * 23 22 21 25 25 C 1.38095 * 120.12397 * 359.97438 * 23 22 21 26 26 H 0.96997 * 119.99990 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47077 * 59.99802 * 9 7 2 28 28 H 1.09003 * 109.46610 * 299.99907 * 9 7 2 29 29 H 1.08998 * 109.46990 * 60.00625 * 11 10 9 30 30 H 1.08991 * 109.47218 * 299.99850 * 11 10 9 31 31 H 1.08996 * 109.46917 * 305.00481 * 12 11 10 32 32 H 1.08995 * 109.46696 * 185.00194 * 12 11 10 33 33 H 1.08999 * 109.46968 * 59.99928 * 14 13 12 34 34 H 1.09001 * 109.46897 * 300.00365 * 14 13 12 35 35 H 1.08994 * 109.47384 * 305.00273 * 15 14 13 36 36 H 1.08994 * 109.47107 * 184.99639 * 15 14 13 37 37 H 1.07992 * 120.06165 * 0.02562 * 20 19 17 38 38 H 1.07997 * 119.91159 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.85244 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.08786 * 179.75066 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6479 -5.9563 0.0030 13 8 3.3873 -5.8891 1.2242 14 6 4.4289 -6.8619 1.3273 15 6 5.1497 -6.6972 2.6666 16 8 4.2323 -7.0005 3.7506 17 6 4.7140 -6.9030 5.0047 18 8 5.8689 -6.5743 5.1881 19 6 3.8380 -7.1971 6.1574 20 6 2.5099 -7.5759 5.9501 21 6 1.6970 -7.8497 7.0304 22 6 2.1939 -7.7485 8.3177 23 6 3.5093 -7.3727 8.5311 24 17 4.1234 -7.2494 10.1501 25 6 4.3340 -7.0968 7.4584 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5566 0.8903 29 1 0.9453 -4.9831 -0.8878 30 1 0.9445 -4.9818 0.8922 31 1 3.3215 -5.7961 -0.8388 32 1 2.1819 -6.9375 -0.0860 33 1 5.1395 -6.7211 0.5128 34 1 3.9994 -7.8619 1.2658 35 1 5.5025 -5.6707 2.7656 36 1 5.9992 -7.3790 2.7083 37 1 2.1203 -7.6550 4.9460 38 1 0.6700 -8.1430 6.8708 39 1 1.5529 -7.9637 9.1599 40 1 5.3587 -6.7998 7.6256 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861318957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:33 Heat of formation + Delta-G solvation = -184.096423 kcal Electronic energy + Delta-G solvation = -24126.581280 eV Core-core repulsion = 20124.779272 eV Total energy + Delta-G solvation = -4001.802008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75272 -40.02220 -39.30552 -38.20443 -37.53744 -37.41587 -34.94862 -32.86626 -32.14235 -31.80792 -30.30215 -28.75891 -25.91193 -24.55214 -23.86466 -23.49695 -23.36354 -22.10068 -19.39792 -18.67450 -18.47296 -18.14712 -17.64656 -17.24958 -17.12552 -16.68181 -16.38545 -16.19864 -16.06799 -15.83641 -15.62336 -14.85311 -14.79150 -14.71190 -14.32419 -14.07132 -13.63173 -13.36585 -13.13657 -13.01377 -12.77195 -12.70444 -12.63089 -12.59118 -12.42836 -12.24877 -12.08588 -11.91900 -11.69858 -11.65011 -11.30288 -10.89094 -10.55850 -10.27993 -10.23959 -9.92045 -8.33570 -6.45716 -0.54272 0.03880 0.92475 1.31838 1.38482 1.41514 1.53638 1.54051 2.33823 2.53005 2.66272 2.99962 3.20485 3.40771 3.69603 3.84937 3.91678 3.97977 4.07138 4.18097 4.18478 4.24694 4.32841 4.37723 4.52103 4.60164 4.63259 4.68603 4.71475 4.77973 4.90298 4.97503 5.10274 5.15891 5.17311 5.25823 5.53434 5.56276 5.95054 6.26569 6.52728 6.53900 6.81799 7.26192 8.78834 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010789 B = 0.002287 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.547506 B =12237.573393 C =13441.391064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.209 3.791 10 O -0.409 6.409 11 C 0.048 3.952 12 C 0.075 3.925 13 O -0.408 6.408 14 C 0.061 3.939 15 C 0.066 3.934 16 O -0.344 6.344 17 C 0.509 3.491 18 O -0.536 6.536 19 C -0.133 4.133 20 C -0.056 4.056 21 C -0.110 4.110 22 C -0.067 4.067 23 C -0.057 4.057 24 Cl -0.059 7.059 25 C -0.060 4.060 26 H 0.272 0.728 27 H -0.008 1.008 28 H -0.017 1.017 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.154 0.846 38 H 0.177 0.823 39 H 0.169 0.831 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 -23.144 14.009 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.588 4.588 8 H 0.076 0.924 9 C 0.134 3.866 10 O -0.329 6.329 11 C -0.028 4.028 12 C -0.001 4.001 13 O -0.328 6.328 14 C -0.015 4.015 15 C -0.007 4.007 16 O -0.260 6.260 17 C 0.355 3.645 18 O -0.427 6.427 19 C -0.134 4.134 20 C -0.074 4.074 21 C -0.127 4.127 22 C -0.086 4.086 23 C -0.084 4.084 24 Cl -0.030 7.030 25 C -0.079 4.079 26 H 0.080 0.920 27 H 0.009 0.991 28 H 0.001 0.999 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.129 0.871 37 H 0.172 0.828 38 H 0.194 0.806 39 H 0.186 0.814 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.089 -22.767 14.298 27.361 hybrid contribution 0.356 0.910 -0.139 0.987 sum 5.444 -21.857 14.158 26.605 Atomic orbital electron populations 1.70059 1.07661 1.28689 1.50440 1.25954 0.96013 1.03334 0.93884 0.85197 0.78280 0.77052 0.78975 1.18952 1.19742 1.19238 1.21389 0.94000 0.91044 1.52342 0.92360 1.19822 0.88601 0.84682 0.93524 1.87860 1.35410 1.14394 1.95224 1.22695 0.95708 0.83911 1.00524 1.22600 0.93324 0.97560 0.86621 1.88044 1.48567 1.56956 1.39282 1.22746 0.90855 0.93361 0.94574 1.23362 0.91760 1.02359 0.83227 1.86563 1.44781 1.79820 1.14880 1.21417 0.85929 0.73282 0.83875 1.90819 1.19928 1.45290 1.86698 1.19043 0.95225 1.08985 0.90156 1.21868 0.91060 0.92491 1.02012 1.21568 1.01879 0.98904 0.90391 1.21759 0.92762 0.94440 0.99590 1.20845 0.95300 1.06173 0.86060 1.98391 1.87807 1.96720 1.20122 1.21114 1.00662 0.96144 0.89947 0.91960 0.99069 0.99913 0.91162 0.94020 0.92006 0.88235 0.88783 0.89602 0.92049 0.87143 0.82841 0.80570 0.81386 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 2 C 0.01 0.39 5.46 84.65 0.46 0.86 16 3 Si 0.98 45.38 29.54 68.60 2.03 47.41 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.55 -33.86 9.43 25.60 0.24 -33.62 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.21 12.09 5.69 71.24 0.41 12.49 16 10 O -0.41 -20.81 10.29 -144.35 -1.49 -22.30 16 11 C 0.05 1.80 6.32 71.98 0.45 2.25 16 12 C 0.07 2.07 6.32 71.98 0.45 2.53 16 13 O -0.41 -12.86 10.28 -136.02 -1.40 -14.26 16 14 C 0.06 1.26 6.33 71.98 0.46 1.72 16 15 C 0.07 1.54 5.85 71.98 0.42 1.96 16 16 O -0.34 -8.93 9.44 -53.46 -0.50 -9.43 16 17 C 0.51 13.77 7.90 70.33 0.56 14.32 16 18 O -0.54 -17.06 16.14 19.93 0.32 -16.74 16 19 C -0.13 -2.93 5.87 -20.10 -0.12 -3.04 16 20 C -0.06 -0.94 9.62 22.54 0.22 -0.72 16 21 C -0.11 -1.25 10.03 22.23 0.22 -1.02 16 22 C -0.07 -0.80 9.82 22.35 0.22 -0.58 16 23 C -0.06 -0.95 6.31 22.29 0.14 -0.81 16 24 Cl -0.06 -0.95 28.95 -2.72 -0.08 -1.02 16 25 C -0.06 -1.24 9.38 22.56 0.21 -1.03 16 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.96 16 37 H 0.15 2.35 7.61 -2.91 -0.02 2.33 16 38 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 39 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.14 3.02 7.65 -2.91 -0.02 3.00 16 Total: -1.00 -78.05 372.48 4.55 -73.50 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.04 Total: 3.88 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 4.34 Total: -4.70 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.28 Total: -56.33 kcal Atomic # 8 Polarization: -59.66 SS G_CDS: -3.07 Total: -62.73 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.02 kcal Total: -78.05 4.55 -73.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861318957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.601 kcal (2) G-P(sol) polarization free energy of solvation -78.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds