Wall clock time and date at job start Tue Mar 31 2020 15:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34638 * 117.00294 * 2 1 4 4 O 1.21514 * 120.00021 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00236 * 179.97438 * 3 2 1 6 6 C 1.39957 * 120.00129 * 184.04648 * 5 3 2 7 7 C 1.38876 * 120.06971 * 325.54823 * 6 5 3 8 8 C 1.38098 * 119.93010 * 180.25919 * 7 6 5 9 9 C 1.38305 * 120.06827 * 359.41957 * 8 7 6 10 10 S 1.76195 * 119.93179 * 180.28261 * 9 8 7 11 11 O 1.42101 * 106.40480 * 23.86214 * 10 9 8 12 12 O 1.42101 * 106.40456 * 156.77826 * 10 9 8 13 13 N 1.65599 * 107.21908 * 270.31861 * 10 9 8 14 14 C 1.46493 * 120.00200 * 270.00448 * 13 10 9 15 15 C 1.36942 * 119.99846 * 89.99778 * 13 10 9 16 16 H 1.07999 * 120.00059 * 6.69552 * 15 13 10 17 17 C 1.38803 * 120.00081 * 186.69515 * 15 13 10 18 18 N 1.31623 * 120.00267 * 24.99317 * 17 15 13 19 19 Si 1.86804 * 120.00126 * 204.99884 * 17 15 13 20 20 H 1.48501 * 109.47202 * 94.99330 * 19 17 15 21 21 H 1.48502 * 109.47374 * 214.99761 * 19 17 15 22 22 H 1.48497 * 109.47017 * 334.99692 * 19 17 15 23 23 C 1.38261 * 120.13822 * 0.60203 * 9 8 7 24 24 C 1.38136 * 120.06939 * 359.68058 * 23 9 8 25 25 C 1.50702 * 120.03427 * 180.02562 * 24 23 9 26 26 H 1.09007 * 109.47099 * 300.00121 * 1 2 3 27 27 H 1.09003 * 109.47508 * 59.99492 * 1 2 3 28 28 H 1.09000 * 109.47708 * 179.97438 * 1 2 3 29 29 H 0.97004 * 119.99832 * 4.04595 * 5 3 2 30 30 H 1.08001 * 120.03772 * 359.97438 * 7 6 5 31 31 H 1.07997 * 119.96755 * 179.70222 * 8 7 6 32 32 H 1.08998 * 109.47537 * 95.65355 * 14 13 10 33 33 H 1.09001 * 109.47135 * 215.65592 * 14 13 10 34 34 H 1.09001 * 109.47306 * 335.65006 * 14 13 10 35 35 H 0.97000 * 120.00327 * 180.02562 * 18 17 15 36 36 H 1.07995 * 119.96471 * 179.69961 * 23 9 8 37 37 H 1.08996 * 109.46792 * 270.01906 * 25 24 23 38 38 H 1.08993 * 109.47549 * 30.01967 * 25 24 23 39 39 H 1.08999 * 109.46984 * 150.02012 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0447 2.5141 0.0861 7 6 3.4755 3.6291 -0.5151 8 6 4.1078 4.8541 -0.4335 9 6 5.3006 4.9737 0.2563 10 16 6.1005 6.5399 0.3645 11 8 5.0891 7.5207 0.1786 12 8 6.9302 6.4880 1.5169 13 7 7.1160 6.6627 -0.9378 14 6 8.4997 6.1928 -0.8346 15 6 6.6623 7.2034 -2.1113 16 1 5.6790 7.6479 -2.1565 17 6 7.4661 7.1804 -3.2426 18 7 8.4010 6.2623 -3.3671 19 14 7.2211 8.4524 -4.5886 20 1 8.1601 9.5834 -4.3776 21 1 7.4843 7.8306 -5.9112 22 1 5.8243 8.9545 -4.5468 23 6 5.8701 3.8654 0.8555 24 6 5.2455 2.6361 0.7725 25 6 5.8666 1.4288 1.4264 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.9374 0.4586 -0.0584 30 1 2.5417 3.5374 -1.0498 31 1 3.6681 5.7206 -0.9049 32 1 8.5677 5.1755 -1.2200 33 1 9.1496 6.8461 -1.4167 34 1 8.8113 6.2072 0.2098 35 1 8.9630 6.2464 -4.1576 36 1 6.8040 3.9610 1.3893 37 1 6.5321 0.9345 0.7188 38 1 6.4352 1.7419 2.3020 39 1 5.0817 0.7367 1.7314 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863439410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:00 Heat of formation + Delta-G solvation = -106.184100 kcal Electronic energy + Delta-G solvation = -26193.822068 eV Core-core repulsion = 22229.735049 eV Total energy + Delta-G solvation = -3964.087019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.03234 -39.10666 -36.70459 -35.85356 -35.71088 -34.98679 -34.41951 -32.43236 -31.49454 -29.85020 -27.77291 -26.65907 -26.46138 -23.58289 -23.34283 -21.64299 -21.09133 -19.04783 -18.39940 -17.62580 -17.30330 -16.80398 -16.66837 -16.39965 -15.91978 -15.20461 -14.59560 -14.35822 -14.22720 -14.07804 -13.69090 -13.47731 -13.24519 -12.98502 -12.84488 -12.52594 -12.37256 -12.07654 -11.96820 -11.87526 -11.50982 -11.20166 -11.06850 -11.04469 -10.94561 -10.78383 -10.70703 -10.60160 -10.24698 -10.21541 -10.10868 -9.76143 -9.27135 -8.41927 -8.25432 -8.07787 -6.60734 -3.90538 1.20462 1.72624 1.77572 1.90895 2.60167 3.11223 3.17839 3.23610 3.84976 3.96889 4.04128 4.49843 4.72605 4.85777 4.94240 4.95410 5.02890 5.13223 5.18790 5.38917 5.51936 5.56880 5.62180 5.80862 5.91276 5.96367 6.04028 6.26479 6.36632 6.42212 6.53243 6.67066 6.81035 6.86200 7.01113 7.16659 7.25103 7.30796 7.42427 8.05563 8.23903 8.64593 9.07761 10.37443 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.003730 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.147941 B = 7505.708723 C = 8116.095163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.645 3.355 4 O -0.549 6.549 5 N -0.646 5.646 6 C 0.176 3.824 7 C -0.139 4.139 8 C -0.011 4.011 9 C -0.662 4.662 10 S 2.543 3.457 11 O -0.983 6.983 12 O -0.998 6.998 13 N -0.805 5.805 14 C 0.113 3.887 15 C -0.246 4.246 16 H 0.120 0.880 17 C 0.029 3.971 18 N -0.836 5.836 19 Si 0.929 3.071 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.262 1.262 23 C -0.015 4.015 24 C -0.134 4.134 25 C -0.112 4.112 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.416 0.584 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.274 0.726 36 H 0.136 0.864 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 -12.911 2.749 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.285 6.285 3 C 0.399 3.601 4 O -0.436 6.436 5 N -0.298 5.298 6 C 0.083 3.917 7 C -0.160 4.160 8 C -0.031 4.031 9 C -0.740 4.740 10 S 2.639 3.361 11 O -0.973 6.973 12 O -0.988 6.988 13 N -0.630 5.630 14 C -0.033 4.033 15 C -0.392 4.392 16 H 0.138 0.862 17 C -0.182 4.182 18 N -0.475 5.475 19 Si 0.754 3.246 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.186 1.186 23 C -0.034 4.034 24 C -0.137 4.137 25 C -0.169 4.169 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.253 0.747 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.154 0.846 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.753 -12.103 3.567 14.311 hybrid contribution -0.260 -0.924 -1.100 1.460 sum -7.013 -13.027 2.467 14.999 Atomic orbital electron populations 1.23246 0.73927 1.03603 1.03057 1.86229 1.24561 1.30712 1.86985 1.18110 0.83165 0.82435 0.76404 1.91038 1.64361 1.34431 1.53789 1.41974 1.03342 1.09354 1.75089 1.17373 0.92914 0.83713 0.97713 1.21326 1.01561 0.92160 1.00958 1.20781 0.92082 0.97017 0.93236 1.32602 1.07495 1.26553 1.07367 1.10928 0.72919 0.76029 0.76252 1.93359 1.59087 1.58351 1.86471 1.93342 1.67210 1.87875 1.50390 1.54843 1.16134 1.62834 1.29173 1.21511 0.82630 1.00645 0.98538 1.20110 1.04998 1.25618 0.88484 0.86238 1.25537 0.97041 0.97561 0.98098 1.70235 1.19667 1.29222 1.28417 0.85853 0.79736 0.80187 0.78819 1.19841 1.20748 1.18636 1.20552 0.98057 0.90078 0.94733 1.19682 0.96268 0.96559 1.01202 1.20713 1.00388 0.95113 1.00640 0.91634 0.91585 0.87790 0.74729 0.84267 0.84451 0.93554 0.89941 0.93552 0.91576 0.84634 0.91068 0.90828 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.56 101.05 1.07 1.51 16 2 O -0.37 -4.12 10.62 -40.32 -0.43 -4.55 16 3 C 0.65 9.07 8.59 54.05 0.46 9.53 16 4 O -0.55 -9.41 13.55 -19.28 -0.26 -9.67 16 5 N -0.65 -8.53 4.76 -14.27 -0.07 -8.59 16 6 C 0.18 2.91 6.29 -83.69 -0.53 2.38 16 7 C -0.14 -2.60 8.70 -39.40 -0.34 -2.94 16 8 C -0.01 -0.23 9.51 -39.61 -0.38 -0.61 16 9 C -0.66 -13.99 5.97 -39.55 -0.24 -14.22 16 10 S 2.54 59.56 5.65 -107.50 -0.61 58.96 16 11 O -0.98 -25.17 16.06 -57.17 -0.92 -26.09 16 12 O -1.00 -24.36 15.82 -57.17 -0.90 -25.26 16 13 N -0.81 -19.26 3.32 -66.69 -0.22 -19.49 16 14 C 0.11 2.51 9.01 59.84 0.54 3.05 16 15 C -0.25 -6.07 9.49 -15.06 -0.14 -6.21 16 16 H 0.12 2.93 7.22 -52.49 -0.38 2.55 16 17 C 0.03 0.69 4.94 -17.43 -0.09 0.61 16 18 N -0.84 -20.08 10.58 55.49 0.59 -19.49 16 19 Si 0.93 18.64 29.62 -169.99 -5.04 13.60 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.01 -0.27 9.17 -39.61 -0.36 -0.64 16 24 C -0.13 -2.16 5.90 -104.43 -0.62 -2.78 16 25 C -0.11 -1.29 9.48 36.01 0.34 -0.95 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.42 4.11 7.95 -40.82 -0.32 3.79 16 30 H 0.14 2.54 6.20 -52.49 -0.33 2.21 16 31 H 0.14 2.74 7.62 -52.49 -0.40 2.34 16 32 H 0.05 1.03 7.74 -51.93 -0.40 0.62 16 33 H 0.08 1.87 6.59 -51.93 -0.34 1.53 16 34 H 0.05 0.95 6.90 -51.93 -0.36 0.60 16 35 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 36 H 0.14 2.38 7.61 -52.49 -0.40 1.98 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.06 0.59 7.17 -51.93 -0.37 0.22 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -31.63 342.84 -7.52 -39.14 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.55 Total: 7.54 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.28 Total: -11.27 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.30 Total: -47.57 kcal Atomic # 8 Polarization: -63.06 SS G_CDS: -2.51 Total: -65.57 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.04 Total: 13.60 kcal Atomic # 16 Polarization: 59.56 SS G_CDS: -0.61 Total: 58.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.63 -7.52 -39.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863439410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.041 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds