Wall clock time and date at job start Tue Mar 31 2020 15:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34638 * 117.00294 * 2 1 4 4 O 1.21514 * 120.00021 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00236 * 179.97438 * 3 2 1 6 6 C 1.39957 * 120.00129 * 184.04648 * 5 3 2 7 7 C 1.38876 * 120.06971 * 325.54823 * 6 5 3 8 8 C 1.38098 * 119.93010 * 180.25919 * 7 6 5 9 9 C 1.38305 * 120.06827 * 359.41957 * 8 7 6 10 10 S 1.76195 * 119.93179 * 180.28261 * 9 8 7 11 11 O 1.42101 * 106.40480 * 23.86214 * 10 9 8 12 12 O 1.42101 * 106.40456 * 156.77826 * 10 9 8 13 13 N 1.65599 * 107.21908 * 270.31861 * 10 9 8 14 14 C 1.46493 * 120.00200 * 270.00448 * 13 10 9 15 15 C 1.36942 * 119.99846 * 89.99778 * 13 10 9 16 16 H 1.07999 * 120.00059 * 6.69552 * 15 13 10 17 17 C 1.38803 * 120.00081 * 186.69515 * 15 13 10 18 18 N 1.31623 * 120.00267 * 24.99317 * 17 15 13 19 19 Si 1.86804 * 120.00126 * 204.99884 * 17 15 13 20 20 H 1.48501 * 109.47202 * 94.99330 * 19 17 15 21 21 H 1.48502 * 109.47374 * 214.99761 * 19 17 15 22 22 H 1.48497 * 109.47017 * 334.99692 * 19 17 15 23 23 C 1.38261 * 120.13822 * 0.60203 * 9 8 7 24 24 C 1.38136 * 120.06939 * 359.68058 * 23 9 8 25 25 C 1.50702 * 120.03427 * 180.02562 * 24 23 9 26 26 H 1.09007 * 109.47099 * 300.00121 * 1 2 3 27 27 H 1.09003 * 109.47508 * 59.99492 * 1 2 3 28 28 H 1.09000 * 109.47708 * 179.97438 * 1 2 3 29 29 H 0.97004 * 119.99832 * 4.04595 * 5 3 2 30 30 H 1.08001 * 120.03772 * 359.97438 * 7 6 5 31 31 H 1.07997 * 119.96755 * 179.70222 * 8 7 6 32 32 H 1.08998 * 109.47537 * 95.65355 * 14 13 10 33 33 H 1.09001 * 109.47135 * 215.65592 * 14 13 10 34 34 H 1.09001 * 109.47306 * 335.65006 * 14 13 10 35 35 H 0.97000 * 120.00327 * 180.02562 * 18 17 15 36 36 H 1.07995 * 119.96471 * 179.69961 * 23 9 8 37 37 H 1.08996 * 109.46792 * 270.01906 * 25 24 23 38 38 H 1.08993 * 109.47549 * 30.01967 * 25 24 23 39 39 H 1.08999 * 109.46984 * 150.02012 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0447 2.5141 0.0861 7 6 3.4755 3.6291 -0.5151 8 6 4.1078 4.8541 -0.4335 9 6 5.3006 4.9737 0.2563 10 16 6.1005 6.5399 0.3645 11 8 5.0891 7.5207 0.1786 12 8 6.9302 6.4880 1.5169 13 7 7.1160 6.6627 -0.9378 14 6 8.4997 6.1928 -0.8346 15 6 6.6623 7.2034 -2.1113 16 1 5.6790 7.6479 -2.1565 17 6 7.4661 7.1804 -3.2426 18 7 8.4010 6.2623 -3.3671 19 14 7.2211 8.4524 -4.5886 20 1 8.1601 9.5834 -4.3776 21 1 7.4843 7.8306 -5.9112 22 1 5.8243 8.9545 -4.5468 23 6 5.8701 3.8654 0.8555 24 6 5.2455 2.6361 0.7725 25 6 5.8666 1.4288 1.4264 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.9374 0.4586 -0.0584 30 1 2.5417 3.5374 -1.0498 31 1 3.6681 5.7206 -0.9049 32 1 8.5677 5.1755 -1.2200 33 1 9.1496 6.8461 -1.4167 34 1 8.8113 6.2072 0.2098 35 1 8.9630 6.2464 -4.1576 36 1 6.8040 3.9610 1.3893 37 1 6.5321 0.9345 0.7188 38 1 6.4352 1.7419 2.3020 39 1 5.0817 0.7367 1.7314 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863439410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:58 Heat of formation + Delta-G solvation = -128.688500 kcal Electronic energy + Delta-G solvation = -26194.797932 eV Core-core repulsion = 22229.735049 eV Total energy + Delta-G solvation = -3965.062883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.17573 -40.36833 -37.85761 -37.78099 -37.50342 -36.45597 -36.23841 -33.70779 -33.29500 -31.22317 -28.60827 -28.29194 -27.77643 -25.36658 -24.70248 -22.98407 -22.35513 -20.29260 -20.08385 -19.08265 -18.85750 -18.43349 -18.01516 -17.81134 -17.28624 -16.69747 -16.29436 -15.91665 -15.41904 -15.30011 -15.07132 -14.78434 -14.70187 -14.45052 -14.25093 -14.03186 -13.74838 -13.30555 -13.18011 -13.10101 -13.02062 -12.98651 -12.77392 -12.60449 -12.51948 -12.33108 -12.07409 -12.06916 -11.93289 -11.86093 -11.61760 -11.45428 -11.03914 -10.01589 -9.86137 -9.47883 -8.36360 -5.78271 -0.31662 -0.03178 0.28286 0.87653 1.45073 1.49742 1.54615 1.64586 2.25730 2.44581 2.71566 2.92391 3.01659 3.25993 3.59476 3.76377 3.87389 4.19261 4.26759 4.29577 4.31820 4.39380 4.51935 4.58297 4.66062 4.77859 4.80687 4.91294 5.06051 5.07016 5.15981 5.19132 5.21153 5.27784 5.30245 5.44543 5.64630 5.86600 6.07106 6.42928 6.84829 6.99860 7.26637 8.63747 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.003730 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.147941 B = 7505.708723 C = 8116.095163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.361 6.361 3 C 0.646 3.354 4 O -0.583 6.583 5 N -0.633 5.633 6 C 0.187 3.813 7 C -0.149 4.149 8 C -0.030 4.030 9 C -0.685 4.685 10 S 2.580 3.420 11 O -1.009 7.009 12 O -1.008 7.008 13 N -0.825 5.825 14 C 0.122 3.878 15 C -0.290 4.290 16 H 0.108 0.892 17 C 0.001 3.999 18 N -0.863 5.863 19 Si 0.984 3.016 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.265 1.265 23 C -0.025 4.025 24 C -0.123 4.123 25 C -0.112 4.112 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.144 0.856 29 H 0.435 0.565 30 H 0.140 0.860 31 H 0.128 0.872 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.278 0.722 36 H 0.147 0.853 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 -15.756 3.359 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.274 6.274 3 C 0.401 3.599 4 O -0.473 6.473 5 N -0.286 5.286 6 C 0.093 3.907 7 C -0.169 4.169 8 C -0.050 4.050 9 C -0.768 4.768 10 S 2.679 3.321 11 O -0.999 6.999 12 O -0.998 6.998 13 N -0.651 5.651 14 C -0.024 4.024 15 C -0.433 4.433 16 H 0.125 0.875 17 C -0.208 4.208 18 N -0.502 5.502 19 Si 0.806 3.194 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.189 1.189 23 C -0.045 4.045 24 C -0.126 4.126 25 C -0.168 4.168 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.162 0.838 29 H 0.276 0.724 30 H 0.158 0.842 31 H 0.146 0.854 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.165 0.835 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.087 -14.951 4.126 17.052 hybrid contribution -0.346 -0.286 -1.077 1.167 sum -7.433 -15.237 3.049 17.225 Atomic orbital electron populations 1.23628 0.72020 1.06153 1.02848 1.86264 1.26262 1.28598 1.86301 1.18246 0.83179 0.82835 0.75672 1.91029 1.65150 1.35920 1.55199 1.41798 1.03436 1.08869 1.74476 1.17426 0.92818 0.84377 0.96112 1.21369 1.01672 0.92342 1.01552 1.20768 0.92425 0.97824 0.93980 1.32002 1.08665 1.25698 1.10429 1.08487 0.72474 0.75908 0.75241 1.93334 1.59927 1.59868 1.86804 1.93331 1.67714 1.88303 1.50501 1.54405 1.16955 1.65178 1.28585 1.21413 0.81880 1.00080 0.98996 1.20049 1.05252 1.28809 0.89189 0.87460 1.26139 0.96625 0.98589 0.99434 1.70275 1.20606 1.30091 1.29258 0.85055 0.79390 0.78186 0.76734 1.19479 1.19976 1.18864 1.20813 0.98577 0.90506 0.94602 1.20089 0.95494 0.97263 0.99759 1.20869 1.01403 0.93342 1.01209 0.91897 0.91857 0.83830 0.72444 0.84205 0.85446 0.93905 0.90842 0.92299 0.91237 0.83525 0.88759 0.89746 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.62 10.56 113.37 1.20 1.81 16 2 O -0.36 -6.91 10.62 -55.48 -0.59 -7.50 16 3 C 0.65 16.64 8.59 129.79 1.12 17.76 16 4 O -0.58 -19.31 13.55 19.80 0.27 -19.04 16 5 N -0.63 -14.76 4.76 -429.48 -2.04 -16.81 16 6 C 0.19 5.80 6.29 38.14 0.24 6.04 16 7 C -0.15 -5.49 8.70 22.39 0.19 -5.29 16 8 C -0.03 -1.25 9.51 22.25 0.21 -1.04 16 9 C -0.69 -29.15 5.97 22.29 0.13 -29.01 16 10 S 2.58 123.38 5.65 -56.49 -0.32 123.06 16 11 O -1.01 -53.41 16.06 -128.00 -2.06 -55.47 16 12 O -1.01 -49.20 15.82 -128.00 -2.03 -51.22 16 13 N -0.82 -40.62 3.32 -364.92 -1.21 -41.83 16 14 C 0.12 5.53 9.01 127.77 1.15 6.68 16 15 C -0.29 -14.91 9.49 84.03 0.80 -14.11 16 16 H 0.11 5.58 7.22 -2.91 -0.02 5.56 16 17 C 0.00 0.03 4.94 84.86 0.42 0.45 16 18 N -0.86 -42.28 10.58 21.65 0.23 -42.05 16 19 Si 0.98 38.91 29.62 68.60 2.03 40.94 16 20 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 23 C -0.03 -0.91 9.17 22.25 0.20 -0.71 16 24 C -0.12 -3.63 5.90 -19.74 -0.12 -3.74 16 25 C -0.11 -2.09 9.48 71.24 0.67 -1.41 16 26 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.43 6.79 7.95 -92.71 -0.74 6.06 16 30 H 0.14 5.12 6.20 -2.91 -0.02 5.10 16 31 H 0.13 5.40 7.62 -2.91 -0.02 5.38 16 32 H 0.04 1.93 7.74 -2.39 -0.02 1.91 16 33 H 0.07 3.43 6.59 -2.39 -0.02 3.41 16 34 H 0.06 2.44 6.90 -2.39 -0.02 2.42 16 35 H 0.28 12.64 8.31 -92.71 -0.77 11.87 16 36 H 0.15 4.90 7.61 -2.91 -0.02 4.88 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.46 8.09 -2.39 -0.02 1.45 16 39 H 0.08 1.20 7.17 -2.39 -0.02 1.19 16 Total: -1.00 -69.43 342.84 0.87 -68.56 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.37 Total: 23.94 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 6.22 Total: -22.58 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -3.03 Total: -100.69 kcal Atomic # 8 Polarization: -128.83 SS G_CDS: -4.40 Total: -133.23 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Atomic # 16 Polarization: 123.38 SS G_CDS: -0.32 Total: 123.06 kcal Total: -69.43 0.87 -68.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863439410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.133 kcal (2) G-P(sol) polarization free energy of solvation -69.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds