Wall clock time and date at job start Tue Mar 31 2020 15:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48496 * 109.47208 * 270.00348 * 3 2 1 5 5 H 1.48502 * 109.46896 * 30.00318 * 3 2 1 6 6 H 1.48501 * 109.47171 * 149.99846 * 3 2 1 7 7 C 1.37875 * 120.00411 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00369 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00041 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47314 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00079 * 269.99553 * 10 9 7 12 12 C 1.53001 * 109.47368 * 284.94427 * 11 10 9 13 13 F 1.39897 * 109.46701 * 67.42245 * 12 11 10 14 14 F 1.39902 * 109.46814 * 187.42213 * 12 11 10 15 15 F 1.39895 * 109.46920 * 307.41999 * 12 11 10 16 16 C 1.34783 * 119.99987 * 89.99856 * 10 9 7 17 17 O 1.21581 * 119.99756 * 6.09957 * 16 10 9 18 18 C 1.47580 * 119.99950 * 186.10423 * 16 10 9 19 19 C 1.41519 * 120.57126 * 131.73939 * 18 16 10 20 20 N 1.30895 * 120.17224 * 179.97438 * 19 18 16 21 21 C 1.34267 * 121.27158 * 0.02562 * 20 19 18 22 22 N 1.32424 * 131.63182 * 179.97438 * 21 20 19 23 23 C 1.33700 * 109.32223 * 180.02562 * 22 21 20 24 24 C 1.34910 * 108.65644 * 359.93895 * 23 22 21 25 25 N 1.37004 * 107.05886 * 0.09778 * 24 23 22 26 26 C 1.35966 * 132.55560 * 179.97438 * 25 24 23 27 27 H 0.96995 * 120.00812 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47225 * 59.99682 * 9 7 2 29 29 H 1.09001 * 109.47037 * 299.99850 * 9 7 2 30 30 H 1.09000 * 109.46811 * 44.94804 * 11 10 9 31 31 H 1.09006 * 109.47284 * 164.94163 * 11 10 9 32 32 H 1.07997 * 119.91238 * 359.95796 * 19 18 16 33 33 H 1.07998 * 125.67244 * 180.02562 * 23 22 21 34 34 H 1.07993 * 126.46900 * 180.02562 * 24 23 22 35 35 H 1.08001 * 120.57573 * 359.95975 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6125 -0.0027 11 6 2.6791 -4.1682 -1.2719 12 6 1.5762 -5.0224 -1.9003 13 9 0.5130 -4.1998 -2.2875 14 9 2.0835 -5.6877 -3.0216 15 9 1.1239 -5.9606 -0.9664 16 6 2.6412 -4.1258 1.1641 17 8 2.1644 -3.7413 2.2144 18 6 3.6995 -5.1544 1.1668 19 6 4.8168 -5.0352 2.0270 20 7 5.7507 -5.9524 2.0233 21 6 5.6761 -7.0198 1.2122 22 7 6.4870 -8.0525 1.0404 23 6 5.9777 -8.8646 0.1084 24 6 4.8124 -8.3433 -0.3281 25 7 4.6110 -7.1764 0.3609 26 6 3.6164 -6.2499 0.3295 27 1 -0.4851 0.8399 0.0004 28 1 0.6248 -2.5563 -0.8919 29 1 0.6242 -2.5575 0.8880 30 1 2.9396 -3.3551 -1.9495 31 1 3.5587 -4.7862 -1.0909 32 1 4.8994 -4.1851 2.6880 33 1 6.4241 -9.7855 -0.2366 34 1 4.1619 -8.7656 -1.0796 35 1 2.7758 -6.3687 -0.3382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866197126.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:08 Heat of formation + Delta-G solvation = -58.690511 kcal Electronic energy + Delta-G solvation = -28713.389582 eV Core-core repulsion = 24106.354099 eV Total energy + Delta-G solvation = -4607.035483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.28126 -47.85097 -47.61206 -43.23275 -39.95690 -37.88555 -35.81771 -34.79864 -33.01047 -31.41698 -29.68428 -29.43553 -27.34874 -25.22980 -24.35690 -23.61576 -22.80183 -22.05186 -19.95510 -19.04988 -18.75073 -18.47071 -18.09023 -17.30016 -16.90245 -16.52307 -16.41915 -15.85295 -15.65372 -14.91694 -14.58858 -14.50631 -14.38965 -14.25659 -14.12608 -14.11666 -13.85276 -13.77757 -13.50518 -13.01964 -12.81596 -12.59449 -12.28372 -12.26339 -11.92003 -11.42983 -11.12767 -10.81112 -10.75595 -10.39825 -10.21913 -9.96097 -9.64223 -9.29763 -8.61530 -8.41879 -8.34336 -6.23514 -4.30715 0.10076 0.67591 2.01624 2.33202 2.53608 2.84915 3.08680 3.20131 3.28238 3.31569 3.37815 3.39348 3.71977 3.83990 3.88057 4.03102 4.20653 4.28832 4.45265 4.59693 4.77805 4.94400 4.98863 5.12338 5.15966 5.26436 5.42820 5.83442 6.16994 6.23982 6.53309 6.94187 7.16516 7.26513 7.66826 7.69951 7.72499 7.94465 8.28606 8.72205 9.35655 10.84831 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.004591 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.289791 B = 6097.688863 C = 7327.852020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.235 3.765 10 N -0.584 5.584 11 C 0.057 3.943 12 C 0.429 3.571 13 F -0.162 7.162 14 F -0.183 7.183 15 F -0.182 7.182 16 C 0.572 3.428 17 O -0.496 6.496 18 C -0.203 4.203 19 C 0.220 3.780 20 N -0.437 5.437 21 C 0.384 3.616 22 N -0.474 5.474 23 C 0.051 3.949 24 C -0.098 4.098 25 N -0.397 5.397 26 C 0.120 3.880 27 H 0.267 0.733 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.195 0.805 33 H 0.190 0.810 34 H 0.189 0.811 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 -14.139 -5.655 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.316 5.316 11 C -0.071 4.071 12 C 0.372 3.628 13 F -0.143 7.143 14 F -0.165 7.165 15 F -0.163 7.163 16 C 0.357 3.643 17 O -0.369 6.369 18 C -0.212 4.212 19 C 0.032 3.968 20 N -0.147 5.147 21 C 0.036 3.964 22 N -0.196 5.196 23 C -0.101 4.101 24 C -0.228 4.228 25 N -0.074 5.074 26 C -0.014 4.014 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.153 0.847 31 H 0.129 0.871 32 H 0.212 0.788 33 H 0.207 0.793 34 H 0.206 0.794 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.903 -14.107 -4.196 16.256 hybrid contribution -1.288 0.753 -1.287 1.970 sum 5.615 -13.354 -5.483 15.489 Atomic orbital electron populations 1.69916 1.06052 1.27492 1.49093 1.24913 0.94887 0.99335 0.94551 0.86456 0.79850 0.82751 0.78164 1.20510 1.20949 1.19714 1.21318 0.93438 0.90179 1.52939 0.92013 1.19760 0.87047 0.81170 1.00244 1.48179 1.46166 1.35277 1.01932 1.22898 0.93459 0.99864 0.90868 1.21588 0.85147 0.79400 0.76615 1.93262 1.58701 1.71208 1.91129 1.93189 1.87035 1.82097 1.54136 1.92990 1.89917 1.67683 1.65738 1.17428 0.81409 0.80833 0.84666 1.90857 1.56110 1.59701 1.30238 1.21143 1.00945 0.98050 1.01047 1.23443 0.85348 0.95364 0.92669 1.67919 1.27624 1.00038 1.19162 1.22234 0.85503 0.96249 0.92463 1.70731 1.27027 1.02226 1.19611 1.22657 0.92836 0.99898 0.94683 1.22764 1.04141 0.89377 1.06505 1.44002 1.17566 1.16973 1.28839 1.23466 0.92511 0.87519 0.97894 0.92368 0.93147 0.92619 0.84694 0.87145 0.78848 0.79271 0.79367 0.79656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 13.29 55.43 0.74 -23.74 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.20 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.54 -13.62 9.39 -34.44 -0.32 -13.95 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.24 5.39 5.11 -5.20 -0.03 5.36 16 10 N -0.58 -10.46 2.29 -176.28 -0.40 -10.86 16 11 C 0.06 0.76 5.11 -4.04 -0.02 0.74 16 12 C 0.43 5.60 2.95 37.16 0.11 5.71 16 13 F -0.16 -2.56 15.30 2.25 0.03 -2.52 16 14 F -0.18 -2.07 17.32 2.25 0.04 -2.03 16 15 F -0.18 -2.38 14.41 2.25 0.03 -2.35 16 16 C 0.57 10.21 7.26 -12.45 -0.09 10.12 16 17 O -0.50 -10.74 16.59 5.29 0.09 -10.65 16 18 C -0.20 -2.90 5.07 -104.87 -0.53 -3.43 16 19 C 0.22 3.06 10.99 -16.70 -0.18 2.88 16 20 N -0.44 -6.71 10.45 -13.37 -0.14 -6.85 16 21 C 0.38 5.82 8.91 -322.23 -2.87 2.95 16 22 N -0.47 -7.01 11.31 -14.41 -0.16 -7.18 16 23 C 0.05 0.53 11.82 -17.92 -0.21 0.32 16 24 C -0.10 -0.96 11.76 -16.42 -0.19 -1.15 16 25 N -0.40 -5.03 2.94 -63.77 -0.19 -5.21 16 26 C 0.12 1.50 8.42 -15.76 -0.13 1.36 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.05 1.18 6.12 -51.93 -0.32 0.86 16 29 H 0.06 1.46 7.35 -51.93 -0.38 1.08 16 30 H 0.14 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.11 1.21 4.67 -51.93 -0.24 0.97 16 32 H 0.19 2.33 8.06 -52.49 -0.42 1.90 16 33 H 0.19 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.19 2.07 3.49 -52.49 -0.18 1.89 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -31.93 317.05 -7.14 -39.07 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -2.36 Total: -0.22 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: -4.57 Total: 12.56 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.16 Total: -53.84 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 0.11 Total: -6.90 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.93 -7.14 -39.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866197126.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.620 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds