Wall clock time and date at job start Tue Mar 31 2020 15:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48496 * 109.47208 * 270.00348 * 3 2 1 5 5 H 1.48502 * 109.46896 * 30.00318 * 3 2 1 6 6 H 1.48501 * 109.47171 * 149.99846 * 3 2 1 7 7 C 1.37875 * 120.00411 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00369 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00041 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47314 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00079 * 269.99553 * 10 9 7 12 12 C 1.53001 * 109.47368 * 284.94427 * 11 10 9 13 13 F 1.39897 * 109.46701 * 67.42245 * 12 11 10 14 14 F 1.39902 * 109.46814 * 187.42213 * 12 11 10 15 15 F 1.39895 * 109.46920 * 307.41999 * 12 11 10 16 16 C 1.34783 * 119.99987 * 89.99856 * 10 9 7 17 17 O 1.21581 * 119.99756 * 6.09957 * 16 10 9 18 18 C 1.47580 * 119.99950 * 186.10423 * 16 10 9 19 19 C 1.41519 * 120.57126 * 131.73939 * 18 16 10 20 20 N 1.30895 * 120.17224 * 179.97438 * 19 18 16 21 21 C 1.34267 * 121.27158 * 0.02562 * 20 19 18 22 22 N 1.32424 * 131.63182 * 179.97438 * 21 20 19 23 23 C 1.33700 * 109.32223 * 180.02562 * 22 21 20 24 24 C 1.34910 * 108.65644 * 359.93895 * 23 22 21 25 25 N 1.37004 * 107.05886 * 0.09778 * 24 23 22 26 26 C 1.35966 * 132.55560 * 179.97438 * 25 24 23 27 27 H 0.96995 * 120.00812 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47225 * 59.99682 * 9 7 2 29 29 H 1.09001 * 109.47037 * 299.99850 * 9 7 2 30 30 H 1.09000 * 109.46811 * 44.94804 * 11 10 9 31 31 H 1.09006 * 109.47284 * 164.94163 * 11 10 9 32 32 H 1.07997 * 119.91238 * 359.95796 * 19 18 16 33 33 H 1.07998 * 125.67244 * 180.02562 * 23 22 21 34 34 H 1.07993 * 126.46900 * 180.02562 * 24 23 22 35 35 H 1.08001 * 120.57573 * 359.95975 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6125 -0.0027 11 6 2.6791 -4.1682 -1.2719 12 6 1.5762 -5.0224 -1.9003 13 9 0.5130 -4.1998 -2.2875 14 9 2.0835 -5.6877 -3.0216 15 9 1.1239 -5.9606 -0.9664 16 6 2.6412 -4.1258 1.1641 17 8 2.1644 -3.7413 2.2144 18 6 3.6995 -5.1544 1.1668 19 6 4.8168 -5.0352 2.0270 20 7 5.7507 -5.9524 2.0233 21 6 5.6761 -7.0198 1.2122 22 7 6.4870 -8.0525 1.0404 23 6 5.9777 -8.8646 0.1084 24 6 4.8124 -8.3433 -0.3281 25 7 4.6110 -7.1764 0.3609 26 6 3.6164 -6.2499 0.3295 27 1 -0.4851 0.8399 0.0004 28 1 0.6248 -2.5563 -0.8919 29 1 0.6242 -2.5575 0.8880 30 1 2.9396 -3.3551 -1.9495 31 1 3.5587 -4.7862 -1.0909 32 1 4.8994 -4.1851 2.6880 33 1 6.4241 -9.7855 -0.2366 34 1 4.1619 -8.7656 -1.0796 35 1 2.7758 -6.3687 -0.3382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866197126.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:07 Heat of formation + Delta-G solvation = -76.534016 kcal Electronic energy + Delta-G solvation = -28714.163335 eV Core-core repulsion = 24106.354099 eV Total energy + Delta-G solvation = -4607.809235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.35839 -48.90897 -48.72085 -44.20745 -41.30525 -39.00945 -37.27259 -35.89208 -34.86452 -32.62693 -31.01321 -30.38483 -29.00966 -26.28794 -25.75030 -24.82116 -24.18673 -23.01286 -21.25733 -20.13446 -19.84750 -19.53752 -19.29816 -18.69084 -18.05410 -18.01864 -17.55192 -17.22581 -16.86543 -16.32105 -15.92414 -15.72577 -15.65024 -15.31512 -15.13727 -15.08167 -14.89645 -14.87295 -14.65966 -14.42206 -14.19890 -13.84200 -13.60360 -13.53281 -13.24004 -13.00752 -12.86164 -12.54195 -12.23458 -11.86049 -11.77856 -11.38503 -10.93930 -10.61523 -10.36331 -9.93957 -9.33592 -8.22277 -6.35851 -0.93624 -0.35499 0.99959 1.25040 1.42014 1.44513 1.49787 1.56504 1.59943 1.87583 2.32337 2.40147 2.41916 2.61704 2.74023 2.78987 3.03206 3.11148 3.12417 3.37073 3.66864 3.71869 3.93876 4.19210 4.21191 4.34750 4.49427 4.84279 4.90508 5.16279 5.24912 5.30527 5.46082 5.72222 5.99941 6.16180 6.27836 6.70326 6.74141 6.89110 7.34844 8.85957 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.004591 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.289791 B = 6097.688863 C = 7327.852020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.589 5.589 11 C 0.055 3.945 12 C 0.436 3.564 13 F -0.180 7.180 14 F -0.165 7.165 15 F -0.181 7.181 16 C 0.577 3.423 17 O -0.544 6.544 18 C -0.212 4.212 19 C 0.217 3.783 20 N -0.457 5.457 21 C 0.350 3.650 22 N -0.504 5.504 23 C 0.046 3.954 24 C -0.078 4.078 25 N -0.399 5.399 26 C 0.145 3.855 27 H 0.267 0.733 28 H 0.046 0.954 29 H 0.014 0.986 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.202 0.798 33 H 0.230 0.770 34 H 0.234 0.766 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.147 -15.827 -7.575 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.132 3.868 10 N -0.319 5.319 11 C -0.071 4.071 12 C 0.380 3.620 13 F -0.161 7.161 14 F -0.147 7.147 15 F -0.162 7.162 16 C 0.364 3.636 17 O -0.421 6.421 18 C -0.222 4.222 19 C 0.030 3.970 20 N -0.168 5.168 21 C 0.003 3.997 22 N -0.227 5.227 23 C -0.104 4.104 24 C -0.207 4.207 25 N -0.077 5.077 26 C 0.010 3.990 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.219 0.781 33 H 0.246 0.754 34 H 0.251 0.749 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 8.276 -15.840 -6.156 18.902 hybrid contribution -1.658 1.063 -0.762 2.112 sum 6.617 -14.777 -6.919 17.607 Atomic orbital electron populations 1.70033 1.07545 1.28252 1.50492 1.25743 0.95611 1.02765 0.94355 0.85474 0.78468 0.78648 0.78597 1.19226 1.21235 1.19345 1.21661 0.93737 0.91216 1.51905 0.91679 1.19198 0.87394 0.82308 0.97937 1.47954 1.45597 1.34382 1.03934 1.23157 0.94288 1.00771 0.88904 1.21372 0.84379 0.79278 0.76987 1.93232 1.59654 1.71933 1.91317 1.93228 1.86668 1.81612 1.53163 1.92994 1.89913 1.67520 1.65804 1.17786 0.81268 0.80796 0.83770 1.90826 1.57770 1.61585 1.31923 1.20631 1.00290 0.98241 1.03005 1.23506 0.85146 0.95569 0.92818 1.67871 1.28201 1.00686 1.20037 1.22336 0.86783 0.96779 0.93829 1.70707 1.28021 1.02886 1.21085 1.23441 0.93019 1.00530 0.93402 1.23654 1.04044 0.87430 1.05576 1.44147 1.16948 1.17732 1.28895 1.23491 0.92274 0.86501 0.96708 0.92382 0.93623 0.96758 0.83614 0.84274 0.78117 0.75399 0.74928 0.78093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.06 13.29 21.45 0.28 -51.78 16 2 C 0.02 0.81 5.46 84.65 0.46 1.27 16 3 Si 0.96 41.55 29.54 68.60 2.03 43.57 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.55 -27.90 9.39 25.60 0.24 -27.66 16 8 H 0.07 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.25 11.83 5.11 85.63 0.44 12.27 16 10 N -0.59 -21.06 2.29 -829.88 -1.90 -22.96 16 11 C 0.05 1.36 5.11 86.38 0.44 1.80 16 12 C 0.44 10.50 2.95 71.98 0.21 10.71 16 13 F -0.18 -5.55 15.30 44.97 0.69 -4.86 16 14 F -0.17 -3.18 17.32 44.97 0.78 -2.40 16 15 F -0.18 -4.36 14.41 44.97 0.65 -3.71 16 16 C 0.58 20.85 7.26 86.71 0.63 21.47 16 17 O -0.54 -24.59 16.59 -3.97 -0.07 -24.66 16 18 C -0.21 -5.94 5.07 -20.03 -0.10 -6.04 16 19 C 0.22 6.06 10.99 85.64 0.94 7.00 16 20 N -0.46 -13.91 10.45 -196.22 -2.05 -15.96 16 21 C 0.35 10.12 8.91 261.29 2.33 12.45 16 22 N -0.50 -13.93 11.31 -199.51 -2.26 -16.19 16 23 C 0.05 0.78 11.82 83.64 0.99 1.77 16 24 C -0.08 -1.18 11.76 83.12 0.98 -0.20 16 25 N -0.40 -8.97 2.94 -355.66 -1.04 -10.02 16 26 C 0.14 3.26 8.42 84.03 0.71 3.96 16 27 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.05 2.19 6.12 -2.39 -0.01 2.17 16 29 H 0.01 0.79 7.35 -2.39 -0.02 0.77 16 30 H 0.15 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.14 2.66 4.67 -2.38 -0.01 2.65 16 32 H 0.20 5.01 8.06 -2.91 -0.02 4.99 16 33 H 0.23 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.23 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.20 3.85 3.49 -2.91 -0.01 3.84 16 Total: -1.00 -71.79 317.05 6.56 -65.23 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.18 Total: 4.91 kcal Atomic # 6 Polarization: 30.56 SS G_CDS: 8.27 Total: 38.82 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -6.96 Total: -116.90 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.07 Total: -24.66 kcal Atomic # 9 Polarization: -13.08 SS G_CDS: 2.11 Total: -10.97 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -71.79 6.56 -65.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866197126.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.308 kcal (2) G-P(sol) polarization free energy of solvation -71.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds