Wall clock time and date at job start Tue Mar 31 2020 15:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40344 * 119.84905 * 2 1 4 4 C 1.35459 * 119.46353 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.42671 * 180.02562 * 4 3 2 6 6 F 1.39904 * 109.47394 * 5.00252 * 5 4 3 7 7 F 1.39903 * 109.46881 * 124.99854 * 5 4 3 8 8 F 1.39904 * 109.47483 * 244.99892 * 5 4 3 9 9 N 1.36673 * 119.14272 * 359.97438 * 4 3 2 10 10 N 1.39950 * 132.33531 * 180.29556 * 9 4 3 11 11 C 1.32373 * 108.72557 * 180.11504 * 10 9 4 12 12 C 1.47882 * 125.69727 * 179.87934 * 11 10 9 13 13 O 1.21543 * 120.00218 * 179.69342 * 12 11 10 14 14 N 1.34777 * 119.99486 * 359.69039 * 12 11 10 15 15 C 1.46499 * 119.99665 * 179.72374 * 14 12 11 16 16 C 1.50703 * 109.47138 * 180.28062 * 15 14 12 17 17 H 1.08001 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99824 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00502 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99575 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47237 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46786 * 120.00449 * 20 18 16 23 23 H 1.48502 * 109.47225 * 239.99913 * 20 18 16 24 24 C 1.39904 * 108.61227 * 359.61554 * 11 10 9 25 25 C 1.37245 * 119.75263 * 0.02562 * 9 4 3 26 26 N 1.31132 * 119.85528 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47036 * 270.02246 * 1 2 3 28 28 H 1.09003 * 109.47342 * 30.02540 * 1 2 3 29 29 H 1.09000 * 109.47034 * 150.02110 * 1 2 3 30 30 H 1.08003 * 120.26953 * 359.97438 * 3 2 1 31 31 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 32 32 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 33 33 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 34 34 H 0.96997 * 120.00009 * 180.02562 * 19 18 16 35 35 H 1.08005 * 126.20615 * 180.24029 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2054 1.2173 0.0000 4 6 3.5600 1.2081 0.0005 5 6 4.3319 2.5024 0.0011 6 9 3.4423 3.5760 0.1160 7 9 5.2201 2.5151 1.0820 8 9 5.0501 2.6177 -1.1940 9 7 4.2175 0.0100 0.0016 10 7 5.5779 -0.3186 0.0077 11 6 5.6967 -1.6370 0.0033 12 6 6.9702 -2.3886 0.0048 13 8 6.9586 -3.6040 0.0061 14 7 8.1438 -1.7259 0.0047 15 6 9.4054 -2.4704 0.0123 16 6 10.5602 -1.5021 0.0175 17 1 10.3730 -0.4384 0.0150 18 6 11.8556 -1.9741 0.0245 19 7 12.0837 -3.2693 0.0261 20 14 13.2870 -0.7737 0.0302 21 1 12.7666 0.6171 0.0267 22 1 14.1101 -0.9908 1.2470 23 1 14.1221 -0.9934 -1.1779 24 6 4.4162 -2.2007 0.0032 25 6 3.5006 -1.1604 0.0016 26 7 2.1597 -1.1373 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6674 2.1537 -0.0004 31 1 8.1531 -0.7559 0.0041 32 1 9.4525 -3.0967 0.9033 33 1 9.4620 -3.0986 -0.8766 34 1 12.9950 -3.6013 0.0313 35 1 4.1835 -3.2553 0.0039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867873640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:30 Heat of formation + Delta-G solvation = -66.721373 kcal Electronic energy + Delta-G solvation = -27233.202151 eV Core-core repulsion = 22625.818424 eV Total energy + Delta-G solvation = -4607.383727 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -50.71671 -48.27509 -48.10159 -42.74474 -39.38255 -38.11922 -35.15194 -34.34175 -32.79003 -32.23453 -30.33369 -28.70079 -27.43301 -27.36871 -24.80657 -22.92316 -22.73411 -21.67446 -19.95799 -19.60771 -19.05546 -18.77117 -18.19131 -17.70269 -16.56008 -16.48250 -15.57144 -15.45754 -15.06107 -14.96505 -14.95475 -14.65461 -14.55583 -14.49232 -14.29705 -14.25460 -14.16121 -14.09522 -13.49225 -13.10420 -12.92110 -12.79273 -12.30108 -12.01751 -12.00583 -11.67936 -11.60838 -10.97590 -10.91898 -10.44204 -10.35707 -9.80465 -9.58671 -9.39943 -8.78125 -8.37459 -8.00450 -6.18053 -4.24808 -0.34890 0.29721 1.27926 1.72248 1.78079 2.77423 2.87676 3.14996 3.24636 3.26634 3.32005 3.36004 3.69689 3.73620 3.77183 3.92024 4.16959 4.31474 4.34299 4.50504 4.90309 4.98246 4.99309 5.05039 5.18628 5.34141 5.49831 5.63647 5.87055 6.09701 6.84012 7.08245 7.19407 7.28590 7.44439 7.63564 7.92153 8.47711 8.66781 8.91045 9.41243 10.92191 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.003254 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.165475 B = 8603.823546 C =10171.867535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.194 3.806 3 C -0.153 4.153 4 C 0.096 3.904 5 C 0.523 3.477 6 F -0.161 7.161 7 F -0.154 7.154 8 F -0.156 7.156 9 N -0.301 5.301 10 N -0.261 5.261 11 C 0.092 3.908 12 C 0.577 3.423 13 O -0.529 6.529 14 N -0.686 5.686 15 C 0.247 3.753 16 C -0.544 4.544 17 H 0.065 0.935 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.182 4.182 25 C 0.247 3.753 26 N -0.428 5.428 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.182 0.818 31 H 0.400 0.600 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.266 0.734 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.732 13.033 -0.034 28.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.027 3.973 3 C -0.178 4.178 4 C -0.021 4.021 5 C 0.467 3.533 6 F -0.142 7.142 7 F -0.135 7.135 8 F -0.137 7.137 9 N -0.075 5.075 10 N -0.090 5.090 11 C -0.069 4.069 12 C 0.357 3.643 13 O -0.405 6.405 14 N -0.333 5.333 15 C 0.127 3.873 16 C -0.582 4.582 17 H 0.084 0.916 18 C -0.139 4.139 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.213 4.213 25 C 0.023 3.977 26 N -0.140 5.140 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.199 0.801 31 H 0.234 0.766 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -24.966 12.118 -0.033 27.752 hybrid contribution 0.973 1.365 0.011 1.676 sum -23.993 13.483 -0.022 27.522 Atomic orbital electron populations 1.20848 0.85885 1.04978 1.04510 1.21920 0.98220 0.86425 0.90697 1.21743 0.90538 1.02819 1.02730 1.20405 0.92283 0.85011 1.04416 1.17595 0.77760 0.82417 0.75534 1.93230 1.68022 1.57148 1.95847 1.93334 1.68962 1.96490 1.54684 1.93324 1.78544 1.96156 1.45676 1.46804 1.07868 1.04698 1.48166 1.78370 0.87652 1.14834 1.28162 1.22780 0.96601 0.90289 0.97199 1.16889 0.81507 0.86470 0.79387 1.90799 1.86239 1.12203 1.51241 1.46483 1.06395 1.11058 1.69398 1.19298 0.77377 0.92338 0.98320 1.21244 0.90539 0.93115 1.53310 0.91643 1.24936 0.98961 0.95435 0.94582 1.69976 1.21192 1.12201 1.48870 0.86337 0.81786 0.80930 0.77756 1.19550 1.20756 1.20751 1.21124 0.87660 0.99385 1.13111 1.20474 0.87890 0.85855 1.03492 1.68038 1.03941 1.28776 1.13229 0.88787 0.89292 0.89080 0.80118 0.76646 0.94817 0.94806 0.92427 0.80210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.34 10.19 36.00 0.37 0.03 16 2 C 0.19 1.50 6.83 -82.10 -0.56 0.94 16 3 C -0.15 -1.09 9.11 -39.78 -0.36 -1.46 16 4 C 0.10 1.05 6.29 -81.43 -0.51 0.53 16 5 C 0.52 5.57 3.39 36.00 0.12 5.69 16 6 F -0.16 -1.28 16.01 2.25 0.04 -1.24 16 7 F -0.15 -1.94 17.30 2.25 0.04 -1.90 16 8 F -0.16 -1.90 17.30 2.25 0.04 -1.86 16 9 N -0.30 -4.34 3.90 -8.49 -0.03 -4.38 16 10 N -0.26 -4.46 12.21 33.23 0.41 -4.05 16 11 C 0.09 1.66 7.05 -83.06 -0.59 1.08 16 12 C 0.58 12.38 7.83 -12.31 -0.10 12.28 16 13 O -0.53 -12.76 16.88 5.33 0.09 -12.67 16 14 N -0.69 -15.38 5.55 -62.42 -0.35 -15.73 16 15 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 16 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 17 H 0.07 1.72 7.60 -52.49 -0.40 1.32 16 18 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 19 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 20 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.18 -2.89 10.65 -38.83 -0.41 -3.30 16 25 C 0.25 3.53 7.90 -155.43 -1.23 2.30 16 26 N -0.43 -4.96 10.40 -8.47 -0.09 -5.05 16 27 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 0.07 8.09 -51.93 -0.42 -0.35 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.18 0.55 7.17 -52.48 -0.38 0.17 16 31 H 0.40 8.26 8.01 -40.82 -0.33 7.94 16 32 H 0.03 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.03 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.18 2.61 8.06 -52.48 -0.42 2.18 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -33.35 332.90 -5.61 -38.96 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -2.77 Total: 1.02 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -3.72 Total: 11.08 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.67 Total: -54.48 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.35 -5.61 -38.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.759 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds