Wall clock time and date at job start Tue Mar 31 2020 15:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40344 * 119.84905 * 2 1 4 4 C 1.35459 * 119.46353 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.42671 * 180.02562 * 4 3 2 6 6 F 1.39904 * 109.47394 * 5.00252 * 5 4 3 7 7 F 1.39903 * 109.46881 * 124.99854 * 5 4 3 8 8 F 1.39904 * 109.47483 * 244.99892 * 5 4 3 9 9 N 1.36673 * 119.14272 * 359.97438 * 4 3 2 10 10 N 1.39950 * 132.33531 * 180.29556 * 9 4 3 11 11 C 1.32373 * 108.72557 * 180.11504 * 10 9 4 12 12 C 1.47882 * 125.69727 * 179.87934 * 11 10 9 13 13 O 1.21543 * 120.00218 * 179.69342 * 12 11 10 14 14 N 1.34777 * 119.99486 * 359.69039 * 12 11 10 15 15 C 1.46499 * 119.99665 * 179.72374 * 14 12 11 16 16 C 1.50703 * 109.47138 * 180.28062 * 15 14 12 17 17 H 1.08001 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99824 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00502 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99575 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47237 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46786 * 120.00449 * 20 18 16 23 23 H 1.48502 * 109.47225 * 239.99913 * 20 18 16 24 24 C 1.39904 * 108.61227 * 359.61554 * 11 10 9 25 25 C 1.37245 * 119.75263 * 0.02562 * 9 4 3 26 26 N 1.31132 * 119.85528 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47036 * 270.02246 * 1 2 3 28 28 H 1.09003 * 109.47342 * 30.02540 * 1 2 3 29 29 H 1.09000 * 109.47034 * 150.02110 * 1 2 3 30 30 H 1.08003 * 120.26953 * 359.97438 * 3 2 1 31 31 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 32 32 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 33 33 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 34 34 H 0.96997 * 120.00009 * 180.02562 * 19 18 16 35 35 H 1.08005 * 126.20615 * 180.24029 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2054 1.2173 0.0000 4 6 3.5600 1.2081 0.0005 5 6 4.3319 2.5024 0.0011 6 9 3.4423 3.5760 0.1160 7 9 5.2201 2.5151 1.0820 8 9 5.0501 2.6177 -1.1940 9 7 4.2175 0.0100 0.0016 10 7 5.5779 -0.3186 0.0077 11 6 5.6967 -1.6370 0.0033 12 6 6.9702 -2.3886 0.0048 13 8 6.9586 -3.6040 0.0061 14 7 8.1438 -1.7259 0.0047 15 6 9.4054 -2.4704 0.0123 16 6 10.5602 -1.5021 0.0175 17 1 10.3730 -0.4384 0.0150 18 6 11.8556 -1.9741 0.0245 19 7 12.0837 -3.2693 0.0261 20 14 13.2870 -0.7737 0.0302 21 1 12.7666 0.6171 0.0267 22 1 14.1101 -0.9908 1.2470 23 1 14.1221 -0.9934 -1.1779 24 6 4.4162 -2.2007 0.0032 25 6 3.5006 -1.1604 0.0016 26 7 2.1597 -1.1373 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6674 2.1537 -0.0004 31 1 8.1531 -0.7559 0.0041 32 1 9.4525 -3.0967 0.9033 33 1 9.4620 -3.0986 -0.8766 34 1 12.9950 -3.6013 0.0313 35 1 4.1835 -3.2553 0.0039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867873640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:25 Heat of formation + Delta-G solvation = -90.476860 kcal Electronic energy + Delta-G solvation = -27234.232267 eV Core-core repulsion = 22625.818424 eV Total energy + Delta-G solvation = -4608.413842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 5.36 seconds Orbital eigenvalues (eV) -51.54363 -49.05254 -49.00549 -43.77730 -40.85625 -39.37624 -36.34706 -36.04094 -34.51210 -33.47278 -31.29340 -29.92882 -29.10619 -28.08967 -26.32073 -24.50717 -23.53495 -23.09228 -21.53043 -20.55393 -19.91268 -19.71142 -19.54227 -18.55639 -18.24321 -17.60964 -17.25388 -16.86430 -16.31069 -16.29659 -16.02806 -15.80850 -15.77905 -15.39542 -15.38095 -15.12392 -15.05340 -14.85637 -14.82285 -14.23063 -14.08904 -14.07878 -13.73875 -13.14948 -12.98459 -12.87840 -12.78970 -12.75117 -12.69397 -12.28428 -11.53582 -11.43070 -11.29135 -10.87406 -10.82027 -10.03069 -9.44719 -8.32584 -6.49037 -1.18619 -0.64487 0.32473 0.41806 0.90128 1.41440 1.42548 1.56278 1.84408 1.95290 2.05095 2.11535 2.36098 2.43608 2.62450 2.88387 2.92430 3.02320 3.36602 3.52174 3.57456 3.93934 4.07228 4.25225 4.50039 4.72316 4.83470 4.90179 4.97827 5.03170 5.16811 5.28764 5.32014 5.51739 5.73616 5.78365 6.23632 6.55202 6.64977 7.03553 7.24707 8.79735 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.003254 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.165475 B = 8603.823546 C =10171.867535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.213 3.787 3 C -0.109 4.109 4 C 0.058 3.942 5 C 0.527 3.473 6 F -0.140 7.140 7 F -0.169 7.169 8 F -0.168 7.168 9 N -0.301 5.301 10 N -0.284 5.284 11 C 0.072 3.928 12 C 0.583 3.417 13 O -0.564 6.564 14 N -0.686 5.686 15 C 0.264 3.736 16 C -0.560 4.560 17 H 0.078 0.922 18 C 0.009 3.991 19 N -0.926 5.926 20 Si 0.984 3.016 21 H -0.258 1.258 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.205 4.205 25 C 0.259 3.741 26 N -0.453 5.453 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.235 0.765 31 H 0.409 0.591 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.271 0.729 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.937 16.495 -0.018 33.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.047 3.953 3 C -0.132 4.132 4 C -0.057 4.057 5 C 0.472 3.528 6 F -0.121 7.121 7 F -0.150 7.150 8 F -0.150 7.150 9 N -0.076 5.076 10 N -0.115 5.115 11 C -0.087 4.087 12 C 0.365 3.635 13 O -0.442 6.442 14 N -0.334 5.334 15 C 0.142 3.858 16 C -0.598 4.598 17 H 0.096 0.904 18 C -0.191 4.191 19 N -0.564 5.564 20 Si 0.807 3.193 21 H -0.182 1.182 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.236 4.236 25 C 0.032 3.968 26 N -0.166 5.166 27 H 0.135 0.865 28 H 0.146 0.854 29 H 0.109 0.891 30 H 0.252 0.748 31 H 0.244 0.756 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.080 0.920 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -28.210 15.633 -0.018 32.252 hybrid contribution 1.542 0.437 0.008 1.603 sum -26.667 16.070 -0.009 31.135 Atomic orbital electron populations 1.21172 0.81771 1.06938 1.06346 1.22979 1.00449 0.85436 0.86437 1.22542 0.88860 1.04828 0.97014 1.20899 0.93542 0.83964 1.07269 1.17533 0.77654 0.82968 0.74669 1.93268 1.67044 1.56082 1.95693 1.93304 1.69717 1.96611 1.55415 1.93300 1.79015 1.96261 1.46387 1.46837 1.06931 1.06069 1.47757 1.78210 0.89753 1.13925 1.29648 1.21967 0.95283 0.91001 1.00434 1.17237 0.82357 0.86245 0.77612 1.90755 1.87139 1.13899 1.52421 1.46210 1.05670 1.11221 1.70303 1.18785 0.79559 0.92128 0.95302 1.21572 0.91014 0.93689 1.53506 0.90407 1.26000 1.02106 0.97371 0.93647 1.70116 1.22224 1.14501 1.49562 0.85117 0.77556 0.78651 0.77950 1.18190 1.20091 1.20084 1.21100 0.87362 1.00118 1.15036 1.20502 0.88956 0.85238 1.02070 1.68217 1.02144 1.30717 1.15532 0.86546 0.85391 0.89108 0.74827 0.75567 0.98033 0.98018 0.92009 0.80131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.04 10.19 71.23 0.73 0.69 16 2 C 0.21 2.29 6.83 43.17 0.29 2.59 16 3 C -0.11 -0.99 9.11 22.14 0.20 -0.79 16 4 C 0.06 1.12 6.29 41.16 0.26 1.38 16 5 C 0.53 10.16 3.39 71.23 0.24 10.40 16 6 F -0.14 -1.68 16.01 44.97 0.72 -0.96 16 7 F -0.17 -4.14 17.30 44.97 0.78 -3.36 16 8 F -0.17 -3.93 17.30 44.97 0.78 -3.16 16 9 N -0.30 -8.52 3.90 -180.77 -0.70 -9.22 16 10 N -0.28 -10.08 12.21 -48.78 -0.60 -10.67 16 11 C 0.07 2.75 7.05 42.02 0.30 3.05 16 12 C 0.58 26.94 7.83 86.80 0.68 27.62 16 13 O -0.56 -29.44 16.88 -3.85 -0.07 -29.51 16 14 N -0.69 -32.89 5.55 -469.66 -2.60 -35.49 16 15 C 0.26 15.06 5.43 85.63 0.46 15.52 16 16 C -0.56 -31.81 9.28 25.60 0.24 -31.57 16 17 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 18 C 0.01 0.51 5.46 84.66 0.46 0.97 16 19 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 20 Si 0.98 43.59 29.54 68.60 2.03 45.62 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 24 C -0.20 -6.83 10.65 22.76 0.24 -6.59 16 25 C 0.26 7.28 7.90 133.00 1.05 8.33 16 26 N -0.45 -9.45 10.40 -180.71 -1.88 -11.33 16 27 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.13 -0.82 8.09 -2.39 -0.02 -0.83 16 29 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.24 -0.40 7.17 -2.91 -0.02 -0.42 16 31 H 0.41 17.88 8.01 -92.71 -0.74 17.14 16 32 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 33 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.18 5.67 8.06 -2.91 -0.02 5.65 16 Total: -1.00 -79.02 332.90 4.34 -74.68 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.44 Total: 7.77 kcal Atomic # 6 Polarization: 26.43 SS G_CDS: 5.16 Total: 31.59 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.50 Total: -122.67 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.07 Total: -29.51 kcal Atomic # 9 Polarization: -9.76 SS G_CDS: 2.28 Total: -7.48 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -79.02 4.34 -74.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.800 kcal (2) G-P(sol) polarization free energy of solvation -79.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.36 seconds