Wall clock time and date at job start Tue Mar 31 2020 15:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38294 * 119.97433 * 2 1 4 4 C 1.38241 * 120.11719 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.05628 * 359.97405 * 4 3 2 6 6 C 1.38722 * 119.94051 * 0.02562 * 5 4 3 7 7 O 1.35912 * 120.05656 * 179.97438 * 6 5 4 8 8 C 1.34804 * 117.00039 * 96.85641 * 7 6 5 9 9 O 1.21547 * 119.99722 * 4.97568 * 8 7 6 10 10 C 1.47258 * 120.00084 * 184.97510 * 8 7 6 11 11 C 1.39760 * 120.22362 * 359.97438 * 10 8 7 12 12 C 1.37773 * 119.93333 * 180.02562 * 11 10 8 13 13 C 1.38679 * 120.39209 * 359.97438 * 12 11 10 14 14 C 1.37910 * 120.45608 * 0.02562 * 13 12 11 15 15 C 1.39122 * 120.05090 * 359.97438 * 14 13 12 16 16 S 1.76199 * 120.19065 * 180.02562 * 15 14 13 17 17 C 1.76199 * 99.99957 * 6.70825 * 16 15 14 18 18 H 1.07994 * 120.00294 * 5.31764 * 17 16 15 19 19 C 1.38814 * 119.99918 * 185.31324 * 17 16 15 20 20 N 1.31549 * 119.99810 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00290 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46810 * 60.00385 * 21 19 17 23 23 H 1.48498 * 109.47061 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47042 * 300.00656 * 21 19 17 25 25 C 1.38123 * 119.97271 * 180.20781 * 2 1 3 26 26 C 1.50701 * 120.02576 * 0.04093 * 25 2 1 27 27 H 1.09000 * 109.47467 * 90.00224 * 1 2 3 28 28 H 1.09005 * 109.47370 * 210.00319 * 1 2 3 29 29 H 1.08999 * 109.47237 * 330.00328 * 1 2 3 30 30 H 1.08000 * 119.93577 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.97675 * 179.97438 * 4 3 2 32 32 H 1.07993 * 120.02869 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.03253 * 0.04703 * 11 10 8 34 34 H 1.08000 * 119.80349 * 180.02562 * 12 11 10 35 35 H 1.08003 * 119.77167 * 180.27826 * 13 12 11 36 36 H 1.07992 * 119.97297 * 180.02562 * 14 13 12 37 37 H 0.97007 * 119.99565 * 179.97438 * 20 19 17 38 38 H 1.08998 * 109.47390 * 270.20786 * 26 25 2 39 39 H 1.08999 * 109.47207 * 30.21734 * 26 25 2 40 40 H 1.09001 * 109.46751 * 150.21374 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.2753 0.0073 -0.0005 6 6 3.5846 -1.1958 -0.0005 7 8 4.2659 -2.3718 -0.0010 8 6 4.4490 -2.9735 1.1913 9 8 3.9358 -2.5103 2.1909 10 6 5.2709 -4.1920 1.2826 11 6 5.8627 -4.7290 0.1360 12 6 6.6300 -5.8695 0.2282 13 6 6.8203 -6.4899 1.4538 14 6 6.2438 -5.9739 2.5955 15 6 5.4654 -4.8231 2.5239 16 16 4.7277 -4.1603 3.9803 17 6 5.4603 -5.2038 5.1964 18 1 6.2149 -5.9209 4.9089 19 6 5.0675 -5.1042 6.5241 20 7 4.1480 -4.2310 6.8742 21 14 5.8436 -6.2110 7.8134 22 1 7.3087 -5.9720 7.8538 23 1 5.2555 -5.9097 9.1432 24 1 5.5832 -7.6316 7.4678 25 6 2.1970 -1.1965 -0.0043 26 6 1.4434 -2.5016 -0.0100 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6564 2.1324 -0.0004 31 1 4.1176 2.1383 -0.0010 32 1 5.3552 0.0105 -0.0005 33 1 5.7190 -4.2501 -0.8213 34 1 7.0868 -6.2824 -0.6591 35 1 7.4274 -7.3810 1.5153 36 1 6.3974 -6.4632 3.5459 37 1 3.8733 -4.1616 7.8019 38 1 1.2579 -2.8185 1.0162 39 1 0.4931 -2.3702 -0.5273 40 1 2.0345 -3.2601 -0.5232 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891807800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:01 Heat of formation + Delta-G solvation = -29.718306 kcal Electronic energy + Delta-G solvation = -24638.208999 eV Core-core repulsion = 21088.287049 eV Total energy + Delta-G solvation = -3549.921950 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94841 -38.97028 -37.84293 -36.18593 -33.38419 -32.85656 -31.54761 -30.57612 -30.37827 -27.56296 -26.36856 -25.92634 -24.39043 -22.22901 -21.80640 -20.97514 -20.31791 -18.25007 -17.45417 -17.08432 -16.52853 -15.96646 -15.73565 -15.20554 -14.64448 -14.45454 -14.27957 -14.02845 -13.88940 -13.51325 -13.06000 -12.99837 -12.94017 -12.77512 -12.63603 -12.29943 -11.98147 -11.76326 -11.64311 -11.33626 -11.29803 -11.28859 -11.24230 -11.01491 -10.42400 -10.38698 -10.25117 -9.85858 -9.59697 -8.82925 -8.59968 -8.53073 -8.46180 -8.25558 -6.68612 -6.56097 -4.28409 1.18660 1.31021 1.36286 1.96336 3.02024 3.07126 3.09425 3.13382 3.15928 3.30866 3.85792 3.97552 4.34513 4.76065 4.84022 4.85902 4.95102 5.02597 5.13798 5.16976 5.31570 5.41970 5.52110 5.54773 5.59812 5.66192 5.74169 5.77409 5.79806 5.95201 6.04938 6.15500 6.25881 6.26755 6.38920 6.45989 6.54286 6.59681 6.73572 6.80029 6.99026 7.05044 7.15504 7.36109 7.50633 8.06315 8.42451 8.90001 10.47333 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.003854 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.318930 B = 7264.043112 C = 8627.437439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 C -0.119 4.119 4 C -0.111 4.111 5 C -0.123 4.123 6 C 0.098 3.902 7 O -0.300 6.300 8 C 0.493 3.507 9 O -0.466 6.466 10 C -0.166 4.166 11 C -0.039 4.039 12 C -0.190 4.190 13 C -0.068 4.068 14 C -0.155 4.155 15 C -0.055 4.055 16 S 0.188 5.812 17 C -0.596 4.596 18 H 0.093 0.907 19 C 0.084 3.916 20 N -0.856 5.856 21 Si 0.921 3.079 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.269 1.269 25 C -0.082 4.082 26 C -0.120 4.120 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.277 0.723 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 5.033 -14.438 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.079 4.079 3 C -0.137 4.137 4 C -0.129 4.129 5 C -0.142 4.142 6 C 0.057 3.943 7 O -0.217 6.217 8 C 0.339 3.661 9 O -0.352 6.352 10 C -0.179 4.179 11 C -0.058 4.058 12 C -0.214 4.214 13 C -0.090 4.090 14 C -0.180 4.180 15 C -0.175 4.175 16 S 0.454 5.546 17 C -0.742 4.742 18 H 0.111 0.889 19 C -0.127 4.127 20 N -0.488 5.488 21 Si 0.746 3.254 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.194 1.194 25 C -0.083 4.083 26 C -0.176 4.176 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.159 0.841 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.582 6.279 -13.380 15.208 hybrid contribution 1.468 -1.628 0.645 2.285 sum -2.114 4.651 -12.735 13.722 Atomic orbital electron populations 1.20810 0.90927 1.03147 1.02176 1.19627 0.96127 0.91997 1.00163 1.21026 0.94219 0.97389 1.01104 1.20917 0.94158 0.97345 1.00524 1.21207 1.00524 0.91382 1.01042 1.18293 0.89680 0.84304 1.02049 1.84609 1.69105 1.33382 1.34605 1.21545 0.79967 0.84177 0.80402 1.90873 1.45555 1.63764 1.35024 1.18202 1.08430 0.97098 0.94185 1.21104 0.93603 0.94501 0.96610 1.20714 1.04714 0.98517 0.97486 1.21168 0.96916 0.98243 0.92667 1.21397 1.00267 0.96704 0.99610 1.23066 0.98472 0.96648 0.99275 1.84691 1.46151 1.34382 0.89371 1.23994 1.27852 1.26796 0.95579 0.88904 1.25126 0.94108 0.95284 0.98199 1.69960 1.27152 1.32267 1.19395 0.86160 0.79686 0.80367 0.79162 1.19353 1.20461 1.19362 1.19953 0.92496 0.95997 0.99830 1.20810 0.99664 0.93945 1.03213 0.91180 0.91048 0.91428 0.85843 0.85506 0.85376 0.85828 0.86682 0.86707 0.84076 0.91288 0.90354 0.91098 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.18 36.00 0.33 -0.80 16 2 C -0.08 -1.03 5.88 -104.65 -0.62 -1.65 16 3 C -0.12 -1.43 9.70 -39.56 -0.38 -1.81 16 4 C -0.11 -1.38 10.04 -39.61 -0.40 -1.78 16 5 C -0.12 -1.81 9.99 -39.43 -0.39 -2.21 16 6 C 0.10 1.64 4.96 -39.21 -0.19 1.44 16 7 O -0.30 -5.34 8.39 -25.01 -0.21 -5.55 16 8 C 0.49 10.11 7.48 34.40 0.26 10.37 16 9 O -0.47 -10.92 13.50 -19.30 -0.26 -11.18 16 10 C -0.17 -3.36 5.89 -104.77 -0.62 -3.98 16 11 C -0.04 -0.65 9.61 -39.18 -0.38 -1.02 16 12 C -0.19 -2.93 10.02 -39.59 -0.40 -3.33 16 13 C -0.07 -1.12 10.03 -39.54 -0.40 -1.52 16 14 C -0.16 -3.15 9.22 -39.37 -0.36 -3.51 16 15 C -0.05 -1.23 6.15 -38.36 -0.24 -1.47 16 16 S 0.19 4.95 18.56 -107.50 -2.00 2.95 16 17 C -0.60 -16.03 9.01 30.95 0.28 -15.75 16 18 H 0.09 2.35 4.97 -52.49 -0.26 2.09 16 19 C 0.08 2.26 5.49 -17.46 -0.10 2.16 16 20 N -0.86 -24.17 13.22 55.49 0.73 -23.44 16 21 Si 0.92 20.18 29.55 -169.99 -5.02 15.16 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 C -0.08 -1.26 5.81 -104.47 -0.61 -1.87 16 26 C -0.12 -1.69 8.69 36.01 0.31 -1.37 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.72 6.72 -51.93 -0.35 0.37 16 29 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.12 1.77 7.61 -52.49 -0.40 1.37 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 36 H 0.14 2.95 5.03 -52.49 -0.26 2.69 16 37 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 0.79 6.72 -51.93 -0.35 0.44 16 40 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -30.79 353.23 -9.85 -40.65 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.53 Total: 4.18 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -3.89 Total: -28.09 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.73 Total: -23.44 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.47 Total: -16.73 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -2.00 Total: 2.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.79 -9.85 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891807800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.930 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds