Wall clock time and date at job start Tue Mar 31 2020 15:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38294 * 119.97433 * 2 1 4 4 C 1.38241 * 120.11719 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.05628 * 359.97405 * 4 3 2 6 6 C 1.38722 * 119.94051 * 0.02562 * 5 4 3 7 7 O 1.35912 * 120.05656 * 179.97438 * 6 5 4 8 8 C 1.34804 * 117.00039 * 96.85641 * 7 6 5 9 9 O 1.21547 * 119.99722 * 4.97568 * 8 7 6 10 10 C 1.47258 * 120.00084 * 184.97510 * 8 7 6 11 11 C 1.39760 * 120.22362 * 359.97438 * 10 8 7 12 12 C 1.37773 * 119.93333 * 180.02562 * 11 10 8 13 13 C 1.38679 * 120.39209 * 359.97438 * 12 11 10 14 14 C 1.37910 * 120.45608 * 0.02562 * 13 12 11 15 15 C 1.39122 * 120.05090 * 359.97438 * 14 13 12 16 16 S 1.76199 * 120.19065 * 180.02562 * 15 14 13 17 17 C 1.76199 * 99.99957 * 6.70825 * 16 15 14 18 18 H 1.07994 * 120.00294 * 5.31764 * 17 16 15 19 19 C 1.38814 * 119.99918 * 185.31324 * 17 16 15 20 20 N 1.31549 * 119.99810 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00290 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46810 * 60.00385 * 21 19 17 23 23 H 1.48498 * 109.47061 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47042 * 300.00656 * 21 19 17 25 25 C 1.38123 * 119.97271 * 180.20781 * 2 1 3 26 26 C 1.50701 * 120.02576 * 0.04093 * 25 2 1 27 27 H 1.09000 * 109.47467 * 90.00224 * 1 2 3 28 28 H 1.09005 * 109.47370 * 210.00319 * 1 2 3 29 29 H 1.08999 * 109.47237 * 330.00328 * 1 2 3 30 30 H 1.08000 * 119.93577 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.97675 * 179.97438 * 4 3 2 32 32 H 1.07993 * 120.02869 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.03253 * 0.04703 * 11 10 8 34 34 H 1.08000 * 119.80349 * 180.02562 * 12 11 10 35 35 H 1.08003 * 119.77167 * 180.27826 * 13 12 11 36 36 H 1.07992 * 119.97297 * 180.02562 * 14 13 12 37 37 H 0.97007 * 119.99565 * 179.97438 * 20 19 17 38 38 H 1.08998 * 109.47390 * 270.20786 * 26 25 2 39 39 H 1.08999 * 109.47207 * 30.21734 * 26 25 2 40 40 H 1.09001 * 109.46751 * 150.21374 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.2753 0.0073 -0.0005 6 6 3.5846 -1.1958 -0.0005 7 8 4.2659 -2.3718 -0.0010 8 6 4.4490 -2.9735 1.1913 9 8 3.9358 -2.5103 2.1909 10 6 5.2709 -4.1920 1.2826 11 6 5.8627 -4.7290 0.1360 12 6 6.6300 -5.8695 0.2282 13 6 6.8203 -6.4899 1.4538 14 6 6.2438 -5.9739 2.5955 15 6 5.4654 -4.8231 2.5239 16 16 4.7277 -4.1603 3.9803 17 6 5.4603 -5.2038 5.1964 18 1 6.2149 -5.9209 4.9089 19 6 5.0675 -5.1042 6.5241 20 7 4.1480 -4.2310 6.8742 21 14 5.8436 -6.2110 7.8134 22 1 7.3087 -5.9720 7.8538 23 1 5.2555 -5.9097 9.1432 24 1 5.5832 -7.6316 7.4678 25 6 2.1970 -1.1965 -0.0043 26 6 1.4434 -2.5016 -0.0100 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6564 2.1324 -0.0004 31 1 4.1176 2.1383 -0.0010 32 1 5.3552 0.0105 -0.0005 33 1 5.7190 -4.2501 -0.8213 34 1 7.0868 -6.2824 -0.6591 35 1 7.4274 -7.3810 1.5153 36 1 6.3974 -6.4632 3.5459 37 1 3.8733 -4.1616 7.8019 38 1 1.2579 -2.8185 1.0162 39 1 0.4931 -2.3702 -0.5273 40 1 2.0345 -3.2601 -0.5232 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891807800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:00 Heat of formation + Delta-G solvation = -44.592209 kcal Electronic energy + Delta-G solvation = -24638.853980 eV Core-core repulsion = 21088.287049 eV Total energy + Delta-G solvation = -3550.566931 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.33253 -40.26257 -39.26049 -37.71039 -34.81622 -34.41162 -32.82321 -31.95765 -31.85727 -28.60895 -27.89534 -27.39012 -25.83839 -23.67733 -23.18836 -22.03103 -21.71118 -20.01535 -18.99008 -18.56932 -17.77779 -17.46156 -17.08642 -16.84140 -16.04469 -15.87359 -15.78786 -15.34305 -15.02687 -14.93761 -14.68718 -14.37218 -14.02543 -13.88113 -13.73199 -13.56890 -13.37899 -13.10025 -12.99372 -12.97188 -12.77477 -12.60652 -12.50564 -12.31779 -12.09624 -11.89814 -11.59114 -11.52615 -11.39702 -10.49992 -10.20759 -9.95824 -9.62262 -9.59286 -8.58410 -8.50288 -6.31595 -0.22540 0.03892 0.30218 0.46880 1.23664 1.38015 1.42607 1.53413 1.57427 1.80201 2.17789 2.73308 2.80594 2.93134 3.15899 3.68632 3.79514 3.83243 3.99151 4.05300 4.16988 4.21722 4.33941 4.46156 4.57571 4.58579 4.62264 4.67640 4.73910 4.75898 4.82416 4.87444 5.02339 5.08452 5.24831 5.30360 5.32156 5.40315 5.41043 5.47143 5.51415 5.57273 5.60963 5.98716 6.03426 6.10715 6.89153 6.91324 8.55610 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.003854 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.318930 B = 7264.043112 C = 8627.437439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.115 4.115 4 C -0.109 4.109 5 C -0.140 4.140 6 C 0.056 3.944 7 O -0.289 6.289 8 C 0.495 3.505 9 O -0.501 6.501 10 C -0.174 4.174 11 C -0.037 4.037 12 C -0.159 4.159 13 C -0.053 4.053 14 C -0.174 4.174 15 C -0.064 4.064 16 S 0.070 5.930 17 C -0.602 4.602 18 H 0.100 0.900 19 C 0.027 3.973 20 N -0.904 5.904 21 Si 0.995 3.005 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.258 1.258 25 C -0.105 4.105 26 C -0.114 4.114 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.133 0.867 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.128 0.872 37 H 0.277 0.723 38 H 0.051 0.949 39 H 0.100 0.900 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 4.580 -17.534 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.133 4.133 4 C -0.127 4.127 5 C -0.158 4.158 6 C 0.015 3.985 7 O -0.206 6.206 8 C 0.342 3.658 9 O -0.390 6.390 10 C -0.186 4.186 11 C -0.056 4.056 12 C -0.182 4.182 13 C -0.074 4.074 14 C -0.199 4.199 15 C -0.182 4.182 16 S 0.330 5.670 17 C -0.749 4.749 18 H 0.118 0.882 19 C -0.179 4.179 20 N -0.538 5.538 21 Si 0.816 3.184 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.106 4.106 26 C -0.171 4.171 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.178 0.822 31 H 0.177 0.823 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.187 0.813 35 H 0.176 0.824 36 H 0.146 0.854 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.354 5.805 -16.590 17.734 hybrid contribution 1.154 -1.424 1.146 2.162 sum -1.200 4.381 -15.445 16.099 Atomic orbital electron populations 1.20885 0.88628 1.03732 1.03710 1.20091 0.97946 0.91583 0.99007 1.21518 0.94292 0.98435 0.99006 1.21351 0.94752 0.97668 0.98942 1.21451 1.01078 0.91733 1.01575 1.18734 0.90641 0.84250 1.04878 1.84587 1.69015 1.34125 1.32825 1.21784 0.79148 0.84178 0.80720 1.90866 1.46870 1.64685 1.36562 1.18559 1.08345 0.96988 0.94690 1.21532 0.92747 0.94979 0.96364 1.21374 1.01633 0.96420 0.98749 1.21666 0.95378 0.98928 0.91455 1.21473 1.01087 0.96422 1.00890 1.22967 0.99328 0.97956 0.97995 1.84882 1.50719 1.38387 0.92989 1.24195 1.28101 1.26618 0.95961 0.88245 1.26178 0.94605 0.96782 1.00382 1.70118 1.29366 1.34655 1.19678 0.85054 0.78811 0.78455 0.76117 1.18494 1.19942 1.18227 1.20216 0.92323 0.97292 1.00745 1.20764 1.00971 0.93560 1.01785 0.89002 0.91706 0.89668 0.82232 0.82266 0.84954 0.82771 0.81340 0.82352 0.85407 0.91353 0.92992 0.88120 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 9.18 71.23 0.65 -1.36 16 2 C -0.09 -2.15 5.88 -19.88 -0.12 -2.27 16 3 C -0.11 -2.48 9.70 22.28 0.22 -2.26 16 4 C -0.11 -2.53 10.04 22.25 0.22 -2.30 16 5 C -0.14 -4.13 9.99 22.37 0.22 -3.90 16 6 C 0.06 1.91 4.96 22.51 0.11 2.03 16 7 O -0.29 -10.56 8.39 -0.73 -0.01 -10.56 16 8 C 0.49 21.26 7.48 70.19 0.53 21.78 16 9 O -0.50 -25.45 13.50 19.68 0.27 -25.19 16 10 C -0.17 -7.15 5.89 -19.96 -0.12 -7.27 16 11 C -0.04 -1.12 9.61 22.53 0.22 -0.91 16 12 C -0.16 -4.05 10.02 22.27 0.22 -3.83 16 13 C -0.05 -1.55 10.03 22.30 0.22 -1.33 16 14 C -0.17 -7.03 9.22 22.40 0.21 -6.82 16 15 C -0.06 -3.02 6.15 23.06 0.14 -2.88 16 16 S 0.07 3.99 18.56 -56.49 -1.05 2.95 16 17 C -0.60 -34.42 9.01 67.96 0.61 -33.81 16 18 H 0.10 5.28 4.97 -2.91 -0.01 5.27 16 19 C 0.03 1.50 5.49 84.87 0.47 1.96 16 20 N -0.90 -54.54 13.22 21.65 0.29 -54.25 16 21 Si 1.00 42.88 29.55 68.60 2.03 44.90 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 25 C -0.11 -3.28 5.81 -19.77 -0.11 -3.39 16 26 C -0.11 -3.35 8.69 71.24 0.62 -2.73 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.25 6.72 -2.38 -0.02 1.23 16 29 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 30 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.15 3.81 7.61 -2.91 -0.02 3.79 16 34 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 36 H 0.13 5.48 5.03 -2.91 -0.01 5.46 16 37 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.10 2.21 6.72 -2.39 -0.02 2.20 16 40 H 0.06 1.83 7.53 -2.39 -0.02 1.81 16 Total: -1.00 -75.91 353.23 6.91 -69.00 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 1.07 Total: 22.45 kcal Atomic # 6 Polarization: -53.61 SS G_CDS: 4.31 Total: -49.29 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.29 Total: -54.25 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: 0.26 Total: -35.75 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.05 Total: 2.95 kcal Total: -75.91 6.91 -69.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891807800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.404 kcal (2) G-P(sol) polarization free energy of solvation -75.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds