Wall clock time and date at job start Tue Mar 31 2020 16:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46763 * 2 1 4 4 C 1.53002 * 109.47004 * 304.99502 * 3 2 1 5 5 O 1.42902 * 109.47552 * 64.99530 * 3 2 1 6 6 C 1.50705 * 109.47268 * 185.00132 * 3 2 1 7 7 O 1.20826 * 119.99547 * 24.99425 * 6 3 2 8 8 O 1.34224 * 120.00010 * 204.99888 * 6 3 2 9 9 C 1.45201 * 116.99976 * 179.97438 * 8 6 3 10 10 C 1.50704 * 109.47156 * 180.02562 * 9 8 6 11 11 C 1.38108 * 120.02774 * 359.71857 * 10 9 8 12 12 C 1.38388 * 120.05519 * 179.79708 * 11 10 9 13 13 Cl 1.73605 * 119.94692 * 180.23443 * 12 11 10 14 14 C 1.38438 * 120.11074 * 0.46273 * 12 11 10 15 15 C 1.38064 * 120.05292 * 359.79250 * 14 12 11 16 16 C 1.38854 * 120.02591 * 180.02562 * 10 9 8 17 17 O 1.35757 * 120.06086 * 359.97438 * 16 10 9 18 18 C 1.34825 * 117.00443 * 174.38508 * 17 16 10 19 19 H 1.07997 * 120.00104 * 5.06008 * 18 17 16 20 20 C 1.38654 * 119.99972 * 185.07106 * 18 17 16 21 21 N 1.31556 * 120.00073 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99836 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47121 * 59.99187 * 22 20 18 24 24 H 1.48495 * 109.47130 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46577 * 299.99363 * 22 20 18 26 26 H 1.09007 * 109.46587 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47642 * 300.00063 * 1 2 3 28 28 H 1.08993 * 109.47360 * 60.00702 * 1 2 3 29 29 H 1.08991 * 109.47689 * 239.99911 * 2 1 3 30 30 H 1.09006 * 109.47265 * 119.99035 * 2 1 3 31 31 H 1.09007 * 109.47222 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47251 * 300.00526 * 4 3 2 33 33 H 1.09005 * 109.46983 * 60.00538 * 4 3 2 34 34 H 0.96704 * 113.99360 * 60.00286 * 5 3 2 35 35 H 1.09006 * 109.46767 * 299.99751 * 9 8 6 36 36 H 1.08997 * 109.47076 * 59.99729 * 9 8 6 37 37 H 1.08008 * 119.97588 * 0.02615 * 11 10 9 38 38 H 1.07995 * 119.96755 * 179.76771 * 14 12 11 39 39 H 1.08004 * 120.02163 * 179.97438 * 15 14 12 40 40 H 0.96998 * 120.00267 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4299 2.1991 -1.1817 5 8 1.6618 2.0815 1.2210 6 6 3.5419 1.4445 -0.1239 7 8 4.1065 0.5100 -0.6415 8 8 4.2523 2.4841 0.3410 9 6 5.6947 2.4178 0.1883 10 6 6.3186 3.6628 0.7644 11 6 5.5194 4.6436 1.3183 12 6 6.0920 5.7851 1.8513 13 17 5.0852 7.0134 2.5523 14 6 7.4661 5.9515 1.8221 15 6 8.2689 4.9763 1.2647 16 6 7.6970 3.8277 0.7330 17 8 8.4843 2.8677 0.1839 18 6 9.8005 3.1408 0.0802 19 1 10.1974 4.0533 0.4999 20 6 10.6446 2.2502 -0.5654 21 7 10.1613 1.1384 -1.0764 22 14 12.4682 2.6290 -0.7097 23 1 13.0554 2.7601 0.6480 24 1 13.1466 1.5268 -1.4377 25 1 12.6520 3.9010 -1.4536 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.7928 3.2269 -1.1815 32 1 1.7182 1.7117 -2.1130 33 1 0.3435 2.1977 -1.0922 34 1 2.0140 1.6544 2.0138 35 1 6.0760 1.5433 0.7157 36 1 5.9449 2.3417 -0.8698 37 1 4.4469 4.5179 1.3389 38 1 7.9102 6.8450 2.2353 39 1 9.3408 5.1068 1.2418 40 1 10.7518 0.5152 -1.5277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909925727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:02 Heat of formation + Delta-G solvation = -171.795691 kcal Electronic energy + Delta-G solvation = -25631.715638 eV Core-core repulsion = 21630.447030 eV Total energy + Delta-G solvation = -4001.268608 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.02732 -41.03736 -39.02742 -38.51753 -37.73810 -36.96524 -34.36989 -34.23836 -33.15766 -30.70731 -30.54900 -28.03711 -27.35973 -26.39076 -24.02898 -23.06864 -22.46227 -21.16072 -20.00377 -19.50925 -18.84078 -18.15335 -17.79147 -17.03057 -16.81477 -16.48657 -16.22709 -16.18404 -15.74412 -15.39259 -15.13079 -14.80402 -14.66548 -14.18469 -13.98468 -13.84722 -13.65933 -13.54093 -13.42807 -13.07309 -12.85632 -12.78608 -12.75181 -12.70526 -12.54876 -12.22131 -12.17811 -11.92857 -11.88933 -11.75779 -11.58670 -11.32349 -11.02297 -10.79777 -9.88722 -9.01954 -8.52018 -6.20947 0.28616 0.40185 0.91375 1.31267 1.36126 1.37997 1.45643 1.51773 2.14017 2.60367 3.02716 3.04246 3.25979 3.32094 3.58940 3.68670 3.75805 4.00186 4.14618 4.16934 4.28381 4.34336 4.42658 4.45212 4.62234 4.70939 4.74307 4.82805 4.96010 4.98317 5.03976 5.07168 5.14266 5.23533 5.35511 5.42171 5.42975 5.46447 5.83380 5.92151 6.34879 6.65751 6.91525 7.62934 8.69104 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009889 B = 0.003906 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.656044 B = 7167.343286 C = 9786.443897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.161 3.839 4 C -0.146 4.146 5 O -0.537 6.537 6 C 0.427 3.573 7 O -0.531 6.531 8 O -0.338 6.338 9 C 0.144 3.856 10 C -0.169 4.169 11 C -0.037 4.037 12 C -0.112 4.112 13 Cl -0.070 7.070 14 C -0.049 4.049 15 C -0.223 4.223 16 C 0.134 3.866 17 O -0.214 6.214 18 C -0.417 4.417 19 H 0.110 0.890 20 C -0.016 4.016 21 N -0.914 5.914 22 Si 1.017 2.983 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.256 1.256 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.395 0.605 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.786 4.327 4.309 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.118 3.882 4 C -0.202 4.202 5 O -0.345 6.345 6 C 0.270 3.730 7 O -0.420 6.420 8 O -0.253 6.253 9 C 0.070 3.930 10 C -0.171 4.171 11 C -0.055 4.055 12 C -0.139 4.139 13 Cl -0.041 7.041 14 C -0.068 4.068 15 C -0.243 4.243 16 C 0.082 3.918 17 O -0.119 6.119 18 C -0.493 4.493 19 H 0.128 0.872 20 C -0.215 4.215 21 N -0.550 5.550 22 Si 0.836 3.164 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.180 1.180 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.245 0.755 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.169 0.831 38 H 0.173 0.827 39 H 0.159 0.841 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.957 4.156 3.616 16.881 hybrid contribution 1.660 -0.658 0.101 1.788 sum -14.297 3.497 3.717 15.181 Atomic orbital electron populations 1.21768 0.91814 1.02979 1.03431 1.22124 0.99106 0.92403 1.04070 1.21283 0.81348 0.96196 0.89363 1.21952 1.03843 1.00446 0.94006 1.86587 1.75549 1.57317 1.15024 1.25892 0.93622 0.79158 0.74325 1.90703 1.73259 1.36593 1.41473 1.86474 1.20567 1.44525 1.73780 1.21053 0.75860 0.96062 0.99985 1.18614 0.90014 0.98271 1.10184 1.20559 1.00332 0.90322 0.94327 1.20511 0.91446 0.93338 1.08594 1.98305 1.68971 1.53683 1.83160 1.21000 0.91119 0.98661 0.96022 1.21176 1.01348 0.95080 1.06663 1.19490 0.90217 0.89364 0.92772 1.83959 1.20379 1.37424 1.70164 1.21868 0.79988 1.08735 1.38697 0.87236 1.26589 1.05612 0.94547 0.94773 1.70179 1.38421 1.10757 1.35685 0.84659 0.73508 0.78596 0.79600 1.17911 1.20014 1.17987 0.91177 0.91355 0.91115 0.90606 0.90908 0.91343 0.90103 0.87140 0.75455 0.92029 0.92341 0.83080 0.82743 0.84123 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.32 71.98 0.67 -1.15 16 2 C -0.14 -2.56 4.84 30.59 0.15 -2.41 16 3 C 0.16 3.51 1.04 -11.54 -0.01 3.49 16 4 C -0.15 -2.69 8.34 71.98 0.60 -2.09 16 5 O -0.54 -10.50 12.31 -135.71 -1.67 -12.17 16 6 C 0.43 13.52 6.80 71.24 0.48 14.00 16 7 O -0.53 -20.63 15.74 21.96 0.35 -20.29 16 8 O -0.34 -11.62 8.44 -46.42 -0.39 -12.01 16 9 C 0.14 6.03 5.33 71.24 0.38 6.41 16 10 C -0.17 -7.04 5.90 -19.75 -0.12 -7.16 16 11 C -0.04 -1.29 9.16 22.27 0.20 -1.09 16 12 C -0.11 -3.63 6.32 22.35 0.14 -3.48 16 13 Cl -0.07 -1.87 28.95 -2.72 -0.08 -1.95 16 14 C -0.05 -1.63 9.82 22.28 0.22 -1.41 16 15 C -0.22 -8.96 9.17 22.39 0.21 -8.75 16 16 C 0.13 6.27 6.62 22.58 0.15 6.42 16 17 O -0.21 -12.08 9.19 -22.76 -0.21 -12.29 16 18 C -0.42 -22.84 9.49 67.92 0.64 -22.20 16 19 H 0.11 5.36 5.20 -2.91 -0.02 5.34 16 20 C -0.02 -0.88 5.49 84.83 0.47 -0.42 16 21 N -0.91 -54.43 13.67 21.61 0.30 -54.13 16 22 Si 1.02 40.93 29.55 68.60 2.03 42.96 16 23 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 24 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 26 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 0.83 7.82 -2.39 -0.02 0.81 16 28 H 0.07 0.78 6.34 -2.39 -0.02 0.76 16 29 H 0.08 1.59 7.68 -2.39 -0.02 1.58 16 30 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 1.49 6.35 -2.38 -0.02 1.47 16 34 H 0.40 5.56 9.04 -74.05 -0.67 4.90 16 35 H 0.06 2.79 8.13 -2.38 -0.02 2.77 16 36 H 0.06 2.70 8.13 -2.39 -0.02 2.68 16 37 H 0.15 4.78 6.99 -2.91 -0.02 4.76 16 38 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.14 5.52 5.64 -2.91 -0.02 5.51 16 40 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -68.84 357.07 4.92 -63.92 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.42 Total: 25.80 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 4.18 Total: -19.84 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.30 Total: -54.13 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: -1.93 Total: -56.76 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.95 kcal Total: -68.84 4.92 -63.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909925727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.876 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds