Wall clock time and date at job start Tue Mar 31 2020 15:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38284 * 119.97201 * 2 1 4 4 C 1.38258 * 120.11232 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.05443 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.02350 * 179.97438 * 5 4 3 7 7 C 1.38718 * 119.94230 * 359.97438 * 5 4 3 8 8 O 1.35912 * 120.05418 * 179.97438 * 7 5 4 9 9 C 1.34803 * 116.99974 * 81.24407 * 8 7 5 10 10 O 1.21549 * 120.00016 * 355.09444 * 9 8 7 11 11 C 1.47266 * 119.99980 * 174.82366 * 9 8 7 12 12 C 1.39755 * 120.22239 * 0.27631 * 11 9 8 13 13 C 1.37775 * 119.93288 * 179.97438 * 12 11 9 14 14 C 1.38684 * 120.38947 * 0.02562 * 13 12 11 15 15 C 1.37901 * 120.45396 * 359.97438 * 14 13 12 16 16 C 1.39119 * 120.05680 * 359.73902 * 15 14 13 17 17 S 1.76198 * 120.19612 * 180.27637 * 16 15 14 18 18 C 1.76201 * 99.99822 * 7.86314 * 17 16 15 19 19 H 1.07998 * 120.00175 * 5.64839 * 18 17 16 20 20 C 1.38815 * 120.00225 * 185.65022 * 18 17 16 21 21 N 1.31545 * 119.99805 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00568 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47137 * 90.00050 * 22 20 18 24 24 H 1.48499 * 109.47655 * 210.00257 * 22 20 18 25 25 H 1.48502 * 109.46782 * 330.00542 * 22 20 18 26 26 C 1.38119 * 119.96824 * 180.27279 * 2 1 3 27 27 H 1.09006 * 109.46932 * 89.99846 * 1 2 3 28 28 H 1.08997 * 109.47483 * 209.99769 * 1 2 3 29 29 H 1.08998 * 109.47281 * 330.00561 * 1 2 3 30 30 H 1.08000 * 119.95008 * 359.97438 * 3 2 1 31 31 H 1.07994 * 119.96907 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.46915 * 270.01294 * 6 5 4 33 33 H 1.08999 * 109.47513 * 30.01639 * 6 5 4 34 34 H 1.09001 * 109.46650 * 150.02257 * 6 5 4 35 35 H 1.07999 * 120.03279 * 359.97438 * 12 11 9 36 36 H 1.07991 * 119.80081 * 180.02562 * 13 12 11 37 37 H 1.07993 * 119.76791 * 179.97438 * 14 13 12 38 38 H 1.08001 * 119.97046 * 180.02562 * 15 14 13 39 39 H 0.97005 * 120.00203 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.03278 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2013 -0.0005 5 6 4.2753 0.0071 -0.0016 6 6 5.7823 0.0116 -0.0028 7 6 3.5846 -1.1959 -0.0016 8 8 4.2659 -2.3719 -0.0032 9 6 4.7322 -2.8106 1.1831 10 8 4.6143 -2.1192 2.1758 11 6 5.3792 -4.1302 1.2775 12 6 5.5174 -4.9290 0.1391 13 6 6.1241 -6.1623 0.2341 14 6 6.5995 -6.6181 1.4546 15 6 6.4717 -5.8431 2.5880 16 6 5.8674 -4.5923 2.5124 17 16 5.7087 -3.5960 3.9569 18 6 6.6656 -4.5464 5.0908 19 1 7.2086 -5.4135 4.7449 20 6 6.7217 -4.1806 6.4287 21 7 6.0608 -3.1241 6.8500 22 14 7.7356 -5.1886 7.6309 23 1 9.1193 -4.6519 7.6831 24 1 7.1234 -5.1109 8.9816 25 1 7.7704 -6.6042 7.1838 26 6 2.1970 -1.1965 -0.0057 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6566 2.1325 -0.0004 31 1 4.1176 2.1382 -0.0010 32 1 6.1448 0.0134 -1.0308 33 1 6.1434 0.9023 0.5114 34 1 6.1486 -0.8777 0.5100 35 1 5.1489 -4.5799 -0.8142 36 1 6.2301 -6.7776 -0.6470 37 1 7.0731 -7.5866 1.5177 38 1 6.8450 -6.2056 3.5344 39 1 6.0997 -2.8687 7.7850 40 1 1.6570 -2.1318 -0.0097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912712870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:50 Heat of formation + Delta-G solvation = -31.605140 kcal Electronic energy + Delta-G solvation = -24559.339179 eV Core-core repulsion = 21009.335409 eV Total energy + Delta-G solvation = -3550.003769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.96468 -38.92255 -37.83277 -36.18300 -33.65098 -32.85745 -31.09186 -30.39449 -29.98833 -29.26622 -25.92650 -25.10891 -24.29026 -22.53149 -22.02379 -21.36883 -20.06196 -18.23384 -17.39181 -17.06797 -16.51632 -15.91799 -15.64781 -15.20855 -14.65006 -14.48559 -14.24515 -14.02107 -13.89079 -13.51699 -13.19826 -13.05443 -12.97755 -12.79168 -12.63128 -12.31547 -12.02933 -11.68932 -11.54221 -11.42980 -11.29441 -11.27892 -11.25748 -11.00616 -10.42425 -10.41768 -10.25918 -9.85574 -9.60246 -8.83754 -8.77276 -8.46779 -8.40913 -8.24032 -6.68647 -6.56299 -4.28500 1.18167 1.30602 1.35379 1.96178 3.01990 3.06136 3.07828 3.14515 3.15716 3.31082 3.83922 3.97194 4.34270 4.75703 4.82203 4.85687 4.96643 5.02558 5.07138 5.17416 5.36528 5.42126 5.49830 5.53179 5.56611 5.65187 5.72562 5.75164 5.79549 5.97614 6.03717 6.14159 6.25235 6.26725 6.33261 6.51435 6.54604 6.56761 6.73099 6.79945 6.98945 7.05005 7.14502 7.35966 7.50384 8.06485 8.41616 8.89934 10.47177 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.003773 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.702480 B = 7419.665187 C = 8630.111002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.083 4.083 3 C -0.119 4.119 4 C -0.106 4.106 5 C -0.088 4.088 6 C -0.113 4.113 7 C 0.099 3.901 8 O -0.300 6.300 9 C 0.492 3.508 10 O -0.465 6.465 11 C -0.166 4.166 12 C -0.038 4.038 13 C -0.190 4.190 14 C -0.067 4.067 15 C -0.155 4.155 16 C -0.055 4.055 17 S 0.188 5.812 18 C -0.595 4.595 19 H 0.094 0.906 20 C 0.084 3.916 21 N -0.855 5.855 22 Si 0.922 3.078 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.267 1.267 26 C -0.118 4.118 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.142 0.858 39 H 0.277 0.723 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 3.374 -14.381 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.083 4.083 3 C -0.137 4.137 4 C -0.124 4.124 5 C -0.088 4.088 6 C -0.170 4.170 7 C 0.058 3.942 8 O -0.217 6.217 9 C 0.338 3.662 10 O -0.352 6.352 11 C -0.180 4.180 12 C -0.058 4.058 13 C -0.214 4.214 14 C -0.090 4.090 15 C -0.179 4.179 16 C -0.175 4.175 17 S 0.453 5.547 18 C -0.741 4.741 19 H 0.111 0.889 20 C -0.127 4.127 21 N -0.487 5.487 22 Si 0.747 3.253 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.136 4.136 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.159 0.841 39 H 0.087 0.913 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.959 4.970 -13.286 15.386 hybrid contribution 1.259 -1.787 0.567 2.259 sum -4.700 3.183 -12.719 13.928 Atomic orbital electron populations 1.20767 0.90823 1.02995 1.02207 1.19697 0.96126 0.92413 1.00109 1.21025 0.94083 0.97490 1.01099 1.20884 0.94038 0.97022 1.00459 1.20115 0.96852 0.92318 0.99557 1.20734 0.90608 1.03511 1.02137 1.18302 0.90028 0.83949 1.01950 1.84634 1.66032 1.35947 1.35061 1.21542 0.77359 0.86933 0.80325 1.90885 1.52748 1.56176 1.35373 1.18206 1.12323 0.93137 0.94290 1.21106 0.94786 0.93330 0.96587 1.20716 1.05740 0.97345 0.97611 1.21167 0.96607 0.98532 0.92686 1.21393 1.02936 0.93890 0.99710 1.23072 0.96627 0.98362 0.99396 1.84703 1.53574 1.22226 0.94168 1.24026 1.35060 1.18308 0.96739 0.88869 1.25129 0.94928 0.95023 0.97669 1.69966 1.38067 1.23313 1.17396 0.86102 0.79787 0.80214 0.79218 1.19754 1.20380 1.19111 1.21065 0.92495 0.98660 1.01422 0.91195 0.91399 0.91413 0.85812 0.85505 0.90954 0.91148 0.91365 0.85815 0.86673 0.86702 0.84082 0.91341 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.08 -1.05 5.88 -104.65 -0.62 -1.66 16 3 C -0.12 -1.42 9.70 -39.56 -0.38 -1.80 16 4 C -0.11 -1.37 9.70 -39.60 -0.38 -1.76 16 5 C -0.09 -1.35 5.73 -104.47 -0.60 -1.95 16 6 C -0.11 -1.63 9.78 36.00 0.35 -1.28 16 7 C 0.10 1.66 5.01 -39.21 -0.20 1.46 16 8 O -0.30 -5.35 8.73 -25.00 -0.22 -5.57 16 9 C 0.49 10.11 6.42 34.40 0.22 10.33 16 10 O -0.47 -10.93 13.24 -19.30 -0.26 -11.18 16 11 C -0.17 -3.37 5.89 -104.77 -0.62 -3.99 16 12 C -0.04 -0.65 9.61 -39.18 -0.38 -1.02 16 13 C -0.19 -2.93 10.02 -39.59 -0.40 -3.33 16 14 C -0.07 -1.12 10.03 -39.54 -0.40 -1.52 16 15 C -0.15 -3.15 9.21 -39.38 -0.36 -3.51 16 16 C -0.05 -1.23 6.14 -38.36 -0.24 -1.47 16 17 S 0.19 4.93 18.56 -107.50 -2.00 2.94 16 18 C -0.59 -16.00 8.99 30.95 0.28 -15.73 16 19 H 0.09 2.36 5.01 -52.49 -0.26 2.10 16 20 C 0.08 2.25 5.49 -17.46 -0.10 2.16 16 21 N -0.86 -24.17 13.22 55.49 0.73 -23.44 16 22 Si 0.92 20.20 29.55 -169.99 -5.02 15.18 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 C -0.12 -1.75 9.64 -39.43 -0.38 -2.13 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.07 1.16 6.17 -51.93 -0.32 0.84 16 35 H 0.12 1.77 7.61 -52.49 -0.40 1.37 16 36 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.14 2.96 5.07 -52.49 -0.27 2.70 16 39 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -30.80 354.88 -9.84 -40.64 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.60 Total: 3.94 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -3.83 Total: -27.86 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.73 Total: -23.44 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.47 Total: -16.75 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -2.00 Total: 2.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.80 -9.84 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912712870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.034 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds