Wall clock time and date at job start Tue Mar 31 2020 15:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38266 * 119.97366 * 2 1 4 4 C 1.38264 * 120.11105 * 180.02562 * 3 2 1 5 5 C 1.50712 * 119.97013 * 179.97438 * 4 3 2 6 6 C 1.38139 * 120.06021 * 0.02562 * 4 3 2 7 7 C 1.38747 * 119.94061 * 359.97438 * 6 4 3 8 8 O 1.35907 * 120.05417 * 179.97438 * 7 6 4 9 9 C 1.34806 * 116.99841 * 94.13052 * 8 7 6 10 10 O 1.21545 * 119.99803 * 359.32622 * 9 8 7 11 11 C 1.47263 * 119.99791 * 179.31568 * 9 8 7 12 12 C 1.39751 * 120.22541 * 359.97438 * 11 9 8 13 13 C 1.37775 * 119.93374 * 179.97438 * 12 11 9 14 14 C 1.38679 * 120.39174 * 0.02562 * 13 12 11 15 15 C 1.37904 * 120.45192 * 0.02562 * 14 13 12 16 16 C 1.39114 * 120.05619 * 359.96434 * 15 14 13 17 17 S 1.76200 * 120.19136 * 180.02562 * 16 15 14 18 18 C 1.76192 * 100.00282 * 353.61506 * 17 16 15 19 19 H 1.08001 * 120.00319 * 354.30518 * 18 17 16 20 20 C 1.38821 * 120.00299 * 174.30768 * 18 17 16 21 21 N 1.31543 * 120.00173 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99731 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47098 * 89.99905 * 22 20 18 24 24 H 1.48493 * 109.47020 * 209.99739 * 22 20 18 25 25 H 1.48497 * 109.47158 * 329.99649 * 22 20 18 26 26 C 1.38140 * 119.96453 * 180.25780 * 2 1 3 27 27 H 1.09000 * 109.47641 * 89.99471 * 1 2 3 28 28 H 1.09000 * 109.47516 * 210.00299 * 1 2 3 29 29 H 1.09005 * 109.46798 * 329.99888 * 1 2 3 30 30 H 1.08002 * 119.94525 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.47015 * 270.01971 * 5 4 3 32 32 H 1.08997 * 109.46598 * 30.01872 * 5 4 3 33 33 H 1.08997 * 109.46593 * 150.02071 * 5 4 3 34 34 H 1.08005 * 120.03222 * 179.97438 * 6 4 3 35 35 H 1.07998 * 120.03155 * 0.04039 * 12 11 9 36 36 H 1.08002 * 119.80103 * 180.02562 * 13 12 11 37 37 H 1.08002 * 119.77623 * 180.27533 * 14 13 12 38 38 H 1.08005 * 119.97264 * 179.97438 * 15 14 13 39 39 H 0.97002 * 119.99894 * 180.02562 * 21 20 18 40 40 H 1.07990 * 120.03688 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3302 2.5085 -0.0011 6 6 4.2753 0.0071 -0.0016 7 6 3.5844 -1.1961 -0.0016 8 8 4.2657 -2.3721 -0.0032 9 6 4.4990 -2.9458 1.1942 10 8 4.1155 -2.4043 2.2125 11 6 5.2183 -4.2287 1.2683 12 6 5.6606 -4.8557 0.1003 13 6 6.3334 -6.0556 0.1767 14 6 6.5750 -6.6474 1.4073 15 6 6.1448 -6.0432 2.5699 16 6 5.4638 -4.8314 2.5146 17 16 4.9131 -4.0559 3.9979 18 6 5.3128 -5.3123 5.1667 19 1 5.6838 -6.2679 4.8267 20 6 5.1507 -5.0741 6.5246 21 7 5.4486 -6.0123 7.3972 22 14 4.5096 -3.4211 7.1128 23 1 3.0277 -3.4664 7.1969 24 1 5.0725 -3.1205 8.4537 25 1 4.9190 -2.3623 6.1555 26 6 2.1970 -1.1967 -0.0054 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6565 2.1323 -0.0004 31 1 4.5102 2.8236 -1.0289 32 1 3.7392 3.2663 0.5131 33 1 5.2833 2.3808 0.5121 34 1 5.3553 0.0102 -0.0024 35 1 5.4761 -4.3997 -0.8611 36 1 6.6746 -6.5381 -0.7273 37 1 7.1073 -7.5859 1.4559 38 1 6.3368 -6.5112 3.5242 39 1 5.3350 -5.8459 8.3461 40 1 1.6571 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912713333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:54 Heat of formation + Delta-G solvation = -30.960932 kcal Electronic energy + Delta-G solvation = -24300.527889 eV Core-core repulsion = 20750.552055 eV Total energy + Delta-G solvation = -3549.975834 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97710 -39.12459 -38.01125 -36.36609 -33.68061 -32.81738 -31.56532 -30.53792 -30.48254 -27.43543 -26.88252 -26.01702 -24.70757 -22.37509 -21.95039 -20.95003 -20.36529 -18.36120 -17.45504 -17.05154 -16.55201 -16.32749 -15.97302 -15.26416 -14.71227 -14.62711 -14.26206 -14.03812 -13.90789 -13.59054 -13.37243 -13.28658 -13.10274 -12.71945 -12.68503 -12.59899 -12.11588 -11.99265 -11.74407 -11.49347 -11.44223 -11.40560 -11.26076 -11.00053 -10.62442 -10.57635 -10.34358 -9.79022 -9.53201 -8.95567 -8.72698 -8.68327 -8.55276 -8.42596 -6.94979 -6.57435 -4.30690 1.07646 1.17747 1.24806 1.85789 2.73779 2.96931 2.99706 3.13972 3.29243 3.35684 3.73307 4.06370 4.24191 4.50015 4.60807 4.69464 4.84256 4.85893 5.03899 5.19280 5.19846 5.29518 5.36544 5.39092 5.45082 5.46906 5.49190 5.66367 5.68041 5.74119 5.94782 6.02767 6.05880 6.14064 6.33587 6.34757 6.45532 6.46622 6.60441 6.69870 6.89795 6.97939 7.02501 7.36942 7.65678 8.24832 8.26522 8.85334 10.49316 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.004095 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.096740 B = 6836.765738 C = 8413.637293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.070 4.070 3 C -0.123 4.123 4 C -0.072 4.072 5 C -0.113 4.113 6 C -0.127 4.127 7 C 0.105 3.895 8 O -0.300 6.300 9 C 0.496 3.504 10 O -0.469 6.469 11 C -0.161 4.161 12 C -0.042 4.042 13 C -0.181 4.181 14 C -0.066 4.066 15 C -0.147 4.147 16 C -0.027 4.027 17 S 0.088 5.912 18 C -0.578 4.578 19 H 0.109 0.891 20 C 0.105 3.895 21 N -0.858 5.858 22 Si 0.846 3.154 23 H -0.262 1.262 24 H -0.267 1.267 25 H -0.233 1.233 26 C -0.127 4.127 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.276 0.724 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 10.762 -16.495 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.072 4.072 5 C -0.169 4.169 6 C -0.145 4.145 7 C 0.064 3.936 8 O -0.217 6.217 9 C 0.342 3.658 10 O -0.356 6.356 11 C -0.174 4.174 12 C -0.061 4.061 13 C -0.205 4.205 14 C -0.088 4.088 15 C -0.171 4.171 16 C -0.146 4.146 17 S 0.350 5.650 18 C -0.724 4.724 19 H 0.127 0.873 20 C -0.106 4.106 21 N -0.491 5.491 22 Si 0.670 3.330 23 H -0.187 1.187 24 H -0.191 1.191 25 H -0.157 1.157 26 C -0.145 4.145 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.167 0.833 39 H 0.087 0.913 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.569 12.063 -15.373 20.067 hybrid contribution 0.383 -0.804 0.310 0.943 sum -4.185 11.259 -15.063 19.266 Atomic orbital electron populations 1.20793 0.90708 1.03136 1.02350 1.19721 0.96209 0.92336 0.98791 1.20931 0.93428 0.97582 1.02197 1.19716 0.93713 0.94804 0.98933 1.20788 1.00132 0.93659 1.02350 1.21113 1.00430 0.90964 1.01995 1.18426 0.90180 0.84159 1.00820 1.84637 1.68869 1.34013 1.34200 1.21533 0.78229 0.85396 0.80596 1.90856 1.48188 1.62318 1.34235 1.18254 1.10667 0.94823 0.93636 1.21115 0.94181 0.94277 0.96556 1.20804 1.04881 0.97269 0.97502 1.21227 0.96666 0.98567 0.92369 1.21538 1.00240 0.95348 1.00021 1.22496 0.97130 0.97413 0.97548 1.84063 1.65256 1.21678 0.93956 1.23484 1.52084 1.03032 0.93796 0.87347 1.24800 0.92976 0.97337 0.95528 1.69893 1.43262 1.33248 1.02661 0.86928 0.80829 0.84553 0.80714 1.18657 1.19121 1.15665 1.21168 0.92880 0.98715 1.01744 0.91028 0.91241 0.91342 0.85774 0.91030 0.91347 0.91294 0.85377 0.85551 0.86358 0.86276 0.83290 0.91339 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.07 -0.86 5.88 -104.65 -0.62 -1.47 16 3 C -0.12 -1.40 9.35 -39.56 -0.37 -1.77 16 4 C -0.07 -0.86 5.88 -104.64 -0.62 -1.47 16 5 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 6 C -0.13 -1.80 9.64 -39.43 -0.38 -2.18 16 7 C 0.11 1.68 4.92 -39.21 -0.19 1.49 16 8 O -0.30 -5.14 9.27 -25.00 -0.23 -5.38 16 9 C 0.50 9.83 7.82 34.40 0.27 10.10 16 10 O -0.47 -10.59 13.55 -19.30 -0.26 -10.85 16 11 C -0.16 -3.17 5.89 -104.77 -0.62 -3.78 16 12 C -0.04 -0.67 9.61 -39.19 -0.38 -1.05 16 13 C -0.18 -2.69 10.02 -39.59 -0.40 -3.09 16 14 C -0.07 -1.08 10.03 -39.54 -0.40 -1.48 16 15 C -0.15 -2.99 9.22 -39.38 -0.36 -3.36 16 16 C -0.03 -0.60 6.15 -38.37 -0.24 -0.83 16 17 S 0.09 2.21 16.54 -107.50 -1.78 0.43 16 18 C -0.58 -15.91 9.55 30.95 0.30 -15.61 16 19 H 0.11 3.06 5.19 -52.49 -0.27 2.78 16 20 C 0.11 2.93 5.50 -17.46 -0.10 2.83 16 21 N -0.86 -24.52 13.96 55.49 0.77 -23.75 16 22 Si 0.85 20.53 27.74 -169.99 -4.71 15.82 16 23 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.23 -5.64 6.74 56.52 0.38 -5.26 16 26 C -0.13 -1.83 9.64 -39.43 -0.38 -2.21 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 35 H 0.13 1.72 7.61 -52.49 -0.40 1.32 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.15 3.27 5.02 -52.48 -0.26 3.01 16 39 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 356.18 15.07 5.37 5.37 Total: -1.00 -30.90 356.18 -9.32 -40.22 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.73 Total: 3.32 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -3.75 Total: -25.19 kcal Atomic # 7 Polarization: -24.52 SS G_CDS: 0.77 Total: -23.75 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.49 Total: -16.23 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.71 Total: 15.82 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.78 Total: 0.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.90 -9.32 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912713333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.259 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds