Wall clock time and date at job start Tue Mar 31 2020 15:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38266 * 119.97366 * 2 1 4 4 C 1.38264 * 120.11105 * 180.02562 * 3 2 1 5 5 C 1.50712 * 119.97013 * 179.97438 * 4 3 2 6 6 C 1.38139 * 120.06021 * 0.02562 * 4 3 2 7 7 C 1.38747 * 119.94061 * 359.97438 * 6 4 3 8 8 O 1.35907 * 120.05417 * 179.97438 * 7 6 4 9 9 C 1.34806 * 116.99841 * 94.13052 * 8 7 6 10 10 O 1.21545 * 119.99803 * 359.32622 * 9 8 7 11 11 C 1.47263 * 119.99791 * 179.31568 * 9 8 7 12 12 C 1.39751 * 120.22541 * 359.97438 * 11 9 8 13 13 C 1.37775 * 119.93374 * 179.97438 * 12 11 9 14 14 C 1.38679 * 120.39174 * 0.02562 * 13 12 11 15 15 C 1.37904 * 120.45192 * 0.02562 * 14 13 12 16 16 C 1.39114 * 120.05619 * 359.96434 * 15 14 13 17 17 S 1.76200 * 120.19136 * 180.02562 * 16 15 14 18 18 C 1.76192 * 100.00282 * 353.61506 * 17 16 15 19 19 H 1.08001 * 120.00319 * 354.30518 * 18 17 16 20 20 C 1.38821 * 120.00299 * 174.30768 * 18 17 16 21 21 N 1.31543 * 120.00173 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99731 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47098 * 89.99905 * 22 20 18 24 24 H 1.48493 * 109.47020 * 209.99739 * 22 20 18 25 25 H 1.48497 * 109.47158 * 329.99649 * 22 20 18 26 26 C 1.38140 * 119.96453 * 180.25780 * 2 1 3 27 27 H 1.09000 * 109.47641 * 89.99471 * 1 2 3 28 28 H 1.09000 * 109.47516 * 210.00299 * 1 2 3 29 29 H 1.09005 * 109.46798 * 329.99888 * 1 2 3 30 30 H 1.08002 * 119.94525 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.47015 * 270.01971 * 5 4 3 32 32 H 1.08997 * 109.46598 * 30.01872 * 5 4 3 33 33 H 1.08997 * 109.46593 * 150.02071 * 5 4 3 34 34 H 1.08005 * 120.03222 * 179.97438 * 6 4 3 35 35 H 1.07998 * 120.03155 * 0.04039 * 12 11 9 36 36 H 1.08002 * 119.80103 * 180.02562 * 13 12 11 37 37 H 1.08002 * 119.77623 * 180.27533 * 14 13 12 38 38 H 1.08005 * 119.97264 * 179.97438 * 15 14 13 39 39 H 0.97002 * 119.99894 * 180.02562 * 21 20 18 40 40 H 1.07990 * 120.03688 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3302 2.5085 -0.0011 6 6 4.2753 0.0071 -0.0016 7 6 3.5844 -1.1961 -0.0016 8 8 4.2657 -2.3721 -0.0032 9 6 4.4990 -2.9458 1.1942 10 8 4.1155 -2.4043 2.2125 11 6 5.2183 -4.2287 1.2683 12 6 5.6606 -4.8557 0.1003 13 6 6.3334 -6.0556 0.1767 14 6 6.5750 -6.6474 1.4073 15 6 6.1448 -6.0432 2.5699 16 6 5.4638 -4.8314 2.5146 17 16 4.9131 -4.0559 3.9979 18 6 5.3128 -5.3123 5.1667 19 1 5.6838 -6.2679 4.8267 20 6 5.1507 -5.0741 6.5246 21 7 5.4486 -6.0123 7.3972 22 14 4.5096 -3.4211 7.1128 23 1 3.0277 -3.4664 7.1969 24 1 5.0725 -3.1205 8.4537 25 1 4.9190 -2.3623 6.1555 26 6 2.1970 -1.1967 -0.0054 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6565 2.1323 -0.0004 31 1 4.5102 2.8236 -1.0289 32 1 3.7392 3.2663 0.5131 33 1 5.2833 2.3808 0.5121 34 1 5.3553 0.0102 -0.0024 35 1 5.4761 -4.3997 -0.8611 36 1 6.6746 -6.5381 -0.7273 37 1 7.1073 -7.5859 1.4559 38 1 6.3368 -6.5112 3.5242 39 1 5.3350 -5.8459 8.3461 40 1 1.6571 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912713333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:53 Heat of formation + Delta-G solvation = -45.953636 kcal Electronic energy + Delta-G solvation = -24301.178022 eV Core-core repulsion = 20750.552055 eV Total energy + Delta-G solvation = -3550.625967 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.32706 -40.32735 -39.38787 -37.84016 -34.87853 -34.54759 -32.85507 -32.00180 -31.75139 -28.22659 -28.05811 -27.78721 -26.12153 -23.79512 -23.32376 -21.87246 -21.73050 -20.13464 -18.97992 -18.51509 -17.74439 -17.60196 -17.32569 -17.14823 -16.15725 -15.94831 -15.74655 -15.31344 -15.16513 -14.88143 -14.60436 -14.28930 -14.10766 -14.00675 -13.94871 -13.74744 -13.39316 -13.29052 -13.18579 -13.15721 -12.67207 -12.57976 -12.46561 -12.37346 -12.30351 -11.98610 -11.73704 -11.55261 -11.38732 -10.68474 -10.39637 -10.02887 -9.67455 -9.65377 -8.80234 -8.64408 -6.38694 -0.32209 -0.01425 0.25563 0.38770 0.92153 1.19884 1.35170 1.48493 1.49985 1.69650 2.10336 2.54797 2.67343 2.70989 2.83575 3.60152 3.76732 3.78432 3.91909 4.05215 4.16576 4.26278 4.31657 4.33376 4.52123 4.55286 4.60266 4.65181 4.78367 4.80330 4.81905 4.87308 5.01988 5.07291 5.26063 5.27594 5.28757 5.31482 5.41853 5.49435 5.52015 5.53136 5.61467 5.93486 5.96257 6.12027 6.77623 6.79125 8.46263 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.004095 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.096740 B = 6836.765738 C = 8413.637293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.073 4.073 5 C -0.111 4.111 6 C -0.144 4.144 7 C 0.068 3.932 8 O -0.289 6.289 9 C 0.498 3.502 10 O -0.502 6.502 11 C -0.167 4.167 12 C -0.036 4.036 13 C -0.149 4.149 14 C -0.054 4.054 15 C -0.169 4.169 16 C -0.045 4.045 17 S 0.024 5.976 18 C -0.584 4.584 19 H 0.087 0.913 20 C 0.059 3.941 21 N -0.901 5.901 22 Si 0.899 3.101 23 H -0.260 1.260 24 H -0.249 1.249 25 H -0.238 1.238 26 C -0.147 4.147 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.159 0.841 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.161 0.839 36 H 0.173 0.827 37 H 0.157 0.843 38 H 0.123 0.877 39 H 0.281 0.719 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.086 12.271 -20.144 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.073 4.073 5 C -0.167 4.167 6 C -0.163 4.163 7 C 0.027 3.973 8 O -0.205 6.205 9 C 0.346 3.654 10 O -0.391 6.391 11 C -0.178 4.178 12 C -0.055 4.055 13 C -0.171 4.171 14 C -0.075 4.075 15 C -0.193 4.193 16 C -0.162 4.162 17 S 0.281 5.719 18 C -0.730 4.730 19 H 0.104 0.896 20 C -0.148 4.148 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.185 1.185 24 H -0.172 1.172 25 H -0.162 1.162 26 C -0.165 4.165 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.176 0.824 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.178 0.822 36 H 0.191 0.809 37 H 0.175 0.825 38 H 0.140 0.860 39 H 0.091 0.909 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.779 13.551 -19.115 23.913 hybrid contribution 0.488 -1.292 0.964 1.684 sum -4.291 12.259 -18.151 22.319 Atomic orbital electron populations 1.20865 0.88416 1.03788 1.03755 1.20141 0.97945 0.91809 0.97438 1.21388 0.93390 0.98641 1.00370 1.20154 0.94413 0.95328 0.97388 1.20865 0.99872 0.92221 1.03791 1.21305 1.00779 0.91375 1.02813 1.18799 0.90985 0.84011 1.03513 1.84615 1.68736 1.34786 1.32393 1.21710 0.77386 0.85350 0.81000 1.90832 1.49382 1.63227 1.35651 1.18559 1.10293 0.94941 0.93965 1.21580 0.92954 0.94519 0.96434 1.21443 1.01304 0.95749 0.98643 1.21675 0.95031 0.99398 0.91354 1.21482 1.01646 0.95410 1.00800 1.22479 0.98774 0.98308 0.96618 1.83986 1.69550 1.22397 0.95949 1.23558 1.51744 1.03025 0.94673 0.89564 1.25515 0.93366 1.00254 0.95686 1.69960 1.45596 1.34964 1.03104 0.86143 0.80281 0.80935 0.80656 1.18494 1.17239 1.16217 1.21326 0.92561 0.99786 1.02863 0.89122 0.91771 0.89535 0.82371 0.89120 0.89598 0.91532 0.85260 0.82153 0.80937 0.82538 0.85974 0.90915 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.01 71.24 0.71 -1.05 16 2 C -0.07 -1.67 5.88 -19.88 -0.12 -1.78 16 3 C -0.12 -2.42 9.35 22.28 0.21 -2.21 16 4 C -0.07 -1.61 5.88 -19.88 -0.12 -1.72 16 5 C -0.11 -1.64 10.01 71.24 0.71 -0.93 16 6 C -0.14 -4.04 9.64 22.37 0.22 -3.82 16 7 C 0.07 2.16 4.92 22.51 0.11 2.27 16 8 O -0.29 -9.87 9.27 -0.70 -0.01 -9.87 16 9 C 0.50 20.04 7.82 70.19 0.55 20.59 16 10 O -0.50 -23.62 13.55 19.69 0.27 -23.35 16 11 C -0.17 -6.47 5.89 -19.96 -0.12 -6.59 16 12 C -0.04 -1.02 9.61 22.53 0.22 -0.80 16 13 C -0.15 -3.66 10.02 22.27 0.22 -3.43 16 14 C -0.05 -1.59 10.03 22.30 0.22 -1.37 16 15 C -0.17 -6.97 9.22 22.40 0.21 -6.76 16 16 C -0.04 -2.04 6.15 23.06 0.14 -1.89 16 17 S 0.02 1.28 16.54 -56.49 -0.93 0.35 16 18 C -0.58 -34.33 9.55 67.96 0.65 -33.68 16 19 H 0.09 5.28 5.19 -2.91 -0.02 5.26 16 20 C 0.06 3.47 5.50 84.88 0.47 3.93 16 21 N -0.90 -54.12 13.96 21.65 0.30 -53.82 16 22 Si 0.90 44.42 27.74 68.60 1.90 46.33 16 23 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.25 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.24 -11.87 6.74 99.48 0.67 -11.20 16 26 C -0.15 -4.24 9.64 22.37 0.22 -4.02 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 29 H 0.09 1.07 8.09 -2.38 -0.02 1.05 16 30 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 33 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 34 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.16 3.58 7.61 -2.91 -0.02 3.56 16 36 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.12 5.73 5.02 -2.91 -0.01 5.72 16 39 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.12 3.49 8.06 -2.92 -0.02 3.47 16 Total: -1.00 -74.02 356.18 7.06 -66.96 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.03 Total: 16.69 kcal Atomic # 6 Polarization: -47.77 SS G_CDS: 4.50 Total: -43.27 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.30 Total: -53.82 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: 0.26 Total: -33.23 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.33 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -0.93 Total: 0.35 kcal Total: -74.02 7.06 -66.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912713333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.006 kcal (2) G-P(sol) polarization free energy of solvation -74.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds