Wall clock time and date at job start Tue Mar 31 2020 14:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47070 * 299.99635 * 3 2 1 6 6 H 1.48496 * 109.47162 * 59.99950 * 3 2 1 7 7 C 1.39938 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00012 * 162.31403 * 7 2 1 9 9 C 1.41439 * 120.00053 * 342.31140 * 7 2 1 10 10 C 1.40785 * 120.17503 * 155.18826 * 9 7 2 11 11 C 1.37726 * 120.04896 * 180.02562 * 10 9 7 12 12 C 1.38350 * 120.42055 * 359.94689 * 11 10 9 13 13 C 1.39936 * 120.35377 * 0.04828 * 12 11 10 14 14 C 1.47761 * 120.02987 * 179.97438 * 13 12 11 15 15 O 1.21473 * 119.99870 * 179.97438 * 14 13 12 16 16 O 1.34706 * 120.00359 * 359.97438 * 14 13 12 17 17 C 1.45202 * 117.00088 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47260 * 180.02562 * 17 16 14 19 19 O 1.21280 * 119.99580 * 0.02562 * 18 17 16 20 20 C 1.46975 * 120.00137 * 180.02562 * 18 17 16 21 21 C 1.39946 * 120.19633 * 0.02562 * 20 18 17 22 22 C 1.37768 * 119.85024 * 179.97438 * 21 20 18 23 23 C 1.38518 * 120.25167 * 0.02562 * 22 21 20 24 24 C 1.38233 * 120.40207 * 359.97438 * 23 22 21 25 25 C 1.38277 * 120.13753 * 359.74375 * 24 23 22 26 26 F 1.35100 * 120.12530 * 180.26071 * 25 24 23 27 27 C 1.39092 * 119.93539 * 359.97438 * 13 12 11 28 28 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.97753 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.78494 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.82857 * 180.02562 * 12 11 10 32 32 H 1.08995 * 109.47380 * 300.00579 * 17 16 14 33 33 H 1.09001 * 109.46784 * 60.00428 * 17 16 14 34 34 H 1.07999 * 120.07616 * 359.95509 * 21 20 18 35 35 H 1.07996 * 119.87299 * 179.97438 * 22 21 20 36 36 H 1.08004 * 119.80487 * 179.97438 * 23 22 21 37 37 H 1.07994 * 119.92917 * 180.02562 * 24 23 22 38 38 H 1.08000 * 120.20293 * 180.27125 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0498 -1.2341 -0.2836 9 6 1.3510 -2.4077 0.3733 10 6 1.8221 -3.6492 -0.0944 11 6 1.1800 -4.8120 0.2697 12 6 0.0712 -4.7707 1.0961 13 6 -0.4116 -3.5461 1.5710 14 6 -1.5967 -3.5103 2.4528 15 8 -2.0150 -2.4470 2.8651 16 8 -2.2133 -4.6567 2.7995 17 6 -3.3709 -4.5457 3.6689 18 6 -3.9237 -5.9198 3.9471 19 8 -3.3939 -6.8964 3.4610 20 6 -5.1049 -6.0763 4.8076 21 6 -5.7199 -4.9521 5.3702 22 6 -6.8271 -5.1071 6.1753 23 6 -7.3332 -6.3711 6.4302 24 6 -6.7340 -7.4886 5.8798 25 6 -5.6255 -7.3516 5.0647 26 9 -5.0432 -8.4436 4.5227 27 6 0.2252 -2.3627 1.2122 28 1 -0.4850 0.8400 -0.0004 29 1 2.6875 -3.6899 -0.7392 30 1 1.5447 -5.7621 -0.0918 31 1 -0.4247 -5.6884 1.3760 32 1 -3.0769 -4.0759 4.6074 33 1 -4.1340 -3.9385 3.1820 34 1 -5.3272 -3.9654 5.1740 35 1 -7.3017 -4.2399 6.6100 36 1 -8.2013 -6.4842 7.0627 37 1 -7.1352 -8.4704 6.0833 38 1 -0.1411 -1.4156 1.5797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919310516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:48 Heat of formation + Delta-G solvation = -119.305259 kcal Electronic energy + Delta-G solvation = -25751.180362 eV Core-core repulsion = 21631.160454 eV Total energy + Delta-G solvation = -4120.019908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.19585 -40.37352 -39.57146 -38.41842 -37.34453 -35.73364 -33.76421 -32.39919 -30.94937 -30.49611 -29.53470 -28.65041 -25.39691 -24.48439 -23.34138 -22.62314 -21.01127 -20.36138 -19.91111 -18.19670 -17.78382 -17.05417 -16.76896 -16.45156 -16.33774 -15.93476 -15.86720 -15.17526 -15.04901 -14.77048 -14.55388 -14.43034 -14.16634 -13.50152 -13.37569 -13.13328 -12.85223 -12.65415 -12.54861 -12.50422 -12.11933 -11.81699 -11.69877 -11.22501 -11.12639 -10.77758 -10.53654 -10.47447 -10.28277 -9.96538 -9.72616 -9.63408 -9.51740 -9.26345 -9.22077 -7.76807 -7.56658 -6.84568 -4.45029 0.12298 0.69824 1.91979 2.03236 2.74231 2.76241 3.05695 3.09979 3.12141 3.16577 3.53469 3.70276 3.88626 3.89475 4.16989 4.40364 4.55772 4.59897 4.74541 4.83337 5.06462 5.08948 5.25897 5.48779 5.52069 5.52407 5.62983 5.66007 5.83115 6.12850 6.30202 6.43122 6.56344 6.82523 6.91957 6.95272 7.15009 7.25297 7.29268 7.67008 7.74023 7.89117 8.08236 8.42151 8.44878 8.75135 8.77474 10.11080 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.022213 B = 0.002445 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.232484 B =11448.600433 C =12620.751023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.094 3.906 10 C -0.198 4.198 11 C -0.104 4.104 12 C -0.190 4.190 13 C -0.116 4.116 14 C 0.514 3.486 15 O -0.517 6.517 16 O -0.337 6.337 17 C 0.023 3.977 18 C 0.391 3.609 19 O -0.410 6.410 20 C -0.198 4.198 21 C -0.046 4.046 22 C -0.142 4.142 23 C -0.059 4.059 24 C -0.169 4.169 25 C 0.159 3.841 26 F -0.115 7.115 27 C -0.088 4.088 28 H 0.284 0.716 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.562 -7.755 12.283 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.092 3.908 10 C -0.218 4.218 11 C -0.123 4.123 12 C -0.210 4.210 13 C -0.117 4.117 14 C 0.361 3.639 15 O -0.407 6.407 16 O -0.254 6.254 17 C -0.052 4.052 18 C 0.265 3.735 19 O -0.282 6.282 20 C -0.200 4.200 21 C -0.064 4.064 22 C -0.160 4.160 23 C -0.077 4.077 24 C -0.188 4.188 25 C 0.139 3.861 26 F -0.093 7.093 27 C -0.107 4.107 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.594 -7.861 12.108 20.528 hybrid contribution 0.131 0.716 -0.008 0.728 sum -14.463 -7.146 12.101 20.166 Atomic orbital electron populations 1.69790 1.07600 1.29666 1.34208 1.25965 0.94780 1.01592 0.92239 0.86219 0.80914 0.80735 0.78664 1.18306 1.19908 1.19585 1.19589 0.98228 0.90878 1.40177 0.89891 1.17546 0.91154 0.92650 0.89495 1.21212 1.03096 0.92720 1.04756 1.20532 0.96134 0.97008 0.98588 1.20645 1.00061 0.95486 1.04779 1.18786 0.94858 0.96002 1.02051 1.22000 0.82994 0.80581 0.78306 1.90761 1.65224 1.31100 1.53594 1.86709 1.40747 1.36209 1.61726 1.23065 0.89225 0.96489 0.96410 1.22038 0.82583 0.90350 0.78552 1.90643 1.55153 1.41205 1.41161 1.20470 1.00679 0.93339 1.05538 1.21483 0.93874 0.97911 0.93165 1.21232 0.97036 0.98033 0.99726 1.21307 0.98370 0.91670 0.96390 1.21197 0.96420 1.01162 1.00008 1.17932 0.92211 0.82397 0.93543 1.91610 1.82969 1.51504 1.83258 1.21634 0.96527 0.95854 0.96717 0.90507 0.88264 0.88414 0.87588 0.87867 0.87819 0.83725 0.84357 0.84368 0.83937 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.45 10.97 55.55 0.61 -19.84 16 2 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -11.90 9.05 -37.73 -0.34 -12.25 16 8 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 9 C 0.09 2.47 5.57 -106.87 -0.60 1.87 16 10 C -0.20 -4.71 9.78 -38.81 -0.38 -5.09 16 11 C -0.10 -2.31 10.01 -39.73 -0.40 -2.71 16 12 C -0.19 -4.34 9.62 -38.90 -0.37 -4.71 16 13 C -0.12 -2.82 5.87 -105.05 -0.62 -3.44 16 14 C 0.51 11.50 7.90 34.62 0.27 11.77 16 15 O -0.52 -12.09 16.12 -19.25 -0.31 -12.40 16 16 O -0.34 -6.60 8.99 -47.19 -0.42 -7.03 16 17 C 0.02 0.34 4.56 36.00 0.16 0.50 16 18 C 0.39 5.55 7.19 -30.77 -0.22 5.33 16 19 O -0.41 -7.41 15.49 -14.10 -0.22 -7.63 16 20 C -0.20 -2.18 5.87 -105.01 -0.62 -2.79 16 21 C -0.05 -0.36 9.47 -39.11 -0.37 -0.73 16 22 C -0.14 -0.82 10.02 -39.65 -0.40 -1.22 16 23 C -0.06 -0.33 10.03 -39.48 -0.40 -0.72 16 24 C -0.17 -1.26 10.01 -39.57 -0.40 -1.65 16 25 C 0.16 1.74 7.29 -38.86 -0.28 1.45 16 26 F -0.12 -1.56 15.55 2.25 0.04 -1.52 16 27 C -0.09 -2.32 8.23 -38.42 -0.32 -2.64 16 28 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 29 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.11 2.27 7.59 -52.48 -0.40 1.87 16 32 H 0.10 1.27 8.08 -51.93 -0.42 0.85 16 33 H 0.10 1.30 8.08 -51.93 -0.42 0.88 16 34 H 0.15 0.88 7.05 -52.49 -0.37 0.51 16 35 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 36 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.14 3.78 5.77 -52.49 -0.30 3.48 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -31.82 346.74 -9.04 -40.86 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -3.57 Total: 4.23 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -5.35 Total: -15.30 kcal Atomic # 7 Polarization: -20.45 SS G_CDS: 0.61 Total: -19.84 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.95 Total: -27.06 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.82 -9.04 -40.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919310516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.447 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds