Wall clock time and date at job start Tue Mar 31 2020 14:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47070 * 299.99635 * 3 2 1 6 6 H 1.48496 * 109.47162 * 59.99950 * 3 2 1 7 7 C 1.39938 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00012 * 162.31403 * 7 2 1 9 9 C 1.41439 * 120.00053 * 342.31140 * 7 2 1 10 10 C 1.40785 * 120.17503 * 155.18826 * 9 7 2 11 11 C 1.37726 * 120.04896 * 180.02562 * 10 9 7 12 12 C 1.38350 * 120.42055 * 359.94689 * 11 10 9 13 13 C 1.39936 * 120.35377 * 0.04828 * 12 11 10 14 14 C 1.47761 * 120.02987 * 179.97438 * 13 12 11 15 15 O 1.21473 * 119.99870 * 179.97438 * 14 13 12 16 16 O 1.34706 * 120.00359 * 359.97438 * 14 13 12 17 17 C 1.45202 * 117.00088 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47260 * 180.02562 * 17 16 14 19 19 O 1.21280 * 119.99580 * 0.02562 * 18 17 16 20 20 C 1.46975 * 120.00137 * 180.02562 * 18 17 16 21 21 C 1.39946 * 120.19633 * 0.02562 * 20 18 17 22 22 C 1.37768 * 119.85024 * 179.97438 * 21 20 18 23 23 C 1.38518 * 120.25167 * 0.02562 * 22 21 20 24 24 C 1.38233 * 120.40207 * 359.97438 * 23 22 21 25 25 C 1.38277 * 120.13753 * 359.74375 * 24 23 22 26 26 F 1.35100 * 120.12530 * 180.26071 * 25 24 23 27 27 C 1.39092 * 119.93539 * 359.97438 * 13 12 11 28 28 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.97753 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.78494 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.82857 * 180.02562 * 12 11 10 32 32 H 1.08995 * 109.47380 * 300.00579 * 17 16 14 33 33 H 1.09001 * 109.46784 * 60.00428 * 17 16 14 34 34 H 1.07999 * 120.07616 * 359.95509 * 21 20 18 35 35 H 1.07996 * 119.87299 * 179.97438 * 22 21 20 36 36 H 1.08004 * 119.80487 * 179.97438 * 23 22 21 37 37 H 1.07994 * 119.92917 * 180.02562 * 24 23 22 38 38 H 1.08000 * 120.20293 * 180.27125 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0498 -1.2341 -0.2836 9 6 1.3510 -2.4077 0.3733 10 6 1.8221 -3.6492 -0.0944 11 6 1.1800 -4.8120 0.2697 12 6 0.0712 -4.7707 1.0961 13 6 -0.4116 -3.5461 1.5710 14 6 -1.5967 -3.5103 2.4528 15 8 -2.0150 -2.4470 2.8651 16 8 -2.2133 -4.6567 2.7995 17 6 -3.3709 -4.5457 3.6689 18 6 -3.9237 -5.9198 3.9471 19 8 -3.3939 -6.8964 3.4610 20 6 -5.1049 -6.0763 4.8076 21 6 -5.7199 -4.9521 5.3702 22 6 -6.8271 -5.1071 6.1753 23 6 -7.3332 -6.3711 6.4302 24 6 -6.7340 -7.4886 5.8798 25 6 -5.6255 -7.3516 5.0647 26 9 -5.0432 -8.4436 4.5227 27 6 0.2252 -2.3627 1.2122 28 1 -0.4850 0.8400 -0.0004 29 1 2.6875 -3.6899 -0.7392 30 1 1.5447 -5.7621 -0.0918 31 1 -0.4247 -5.6884 1.3760 32 1 -3.0769 -4.0759 4.6074 33 1 -4.1340 -3.9385 3.1820 34 1 -5.3272 -3.9654 5.1740 35 1 -7.3017 -4.2399 6.6100 36 1 -8.2013 -6.4842 7.0627 37 1 -7.1352 -8.4704 6.0833 38 1 -0.1411 -1.4156 1.5797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919310516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:47 Heat of formation + Delta-G solvation = -134.702099 kcal Electronic energy + Delta-G solvation = -25751.848019 eV Core-core repulsion = 21631.160454 eV Total energy + Delta-G solvation = -4120.687565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.05832 -41.76411 -40.78636 -39.37842 -39.09178 -37.38774 -35.63504 -33.21622 -32.28467 -31.55249 -31.40592 -29.83306 -27.28793 -25.51621 -24.61252 -23.49251 -22.88501 -21.62722 -21.32787 -19.75990 -18.80427 -18.30319 -18.06421 -17.80418 -17.43601 -17.35996 -16.84062 -16.72203 -16.50724 -15.84288 -15.78659 -15.66897 -15.29023 -15.08405 -14.75064 -14.38600 -14.22378 -14.16560 -13.76688 -13.50942 -13.31650 -13.02326 -13.00018 -12.82087 -12.60538 -12.39366 -12.22879 -12.08045 -11.95793 -11.57276 -11.43576 -11.10561 -10.96263 -10.25304 -9.86750 -9.65637 -9.47860 -8.69744 -6.40947 -0.63337 0.06742 0.11699 0.93431 1.11698 1.34782 1.39117 1.44501 1.55372 1.73833 2.19800 2.54499 2.67644 2.70632 3.07795 3.51180 3.59785 3.80941 3.89264 3.93070 3.95051 4.01373 4.23012 4.24014 4.38549 4.59013 4.70799 4.78530 4.92121 4.96725 5.02528 5.08640 5.11565 5.17229 5.26398 5.30975 5.41380 5.75402 5.77479 5.86401 5.98226 6.17535 6.20097 6.50542 6.70850 6.84411 6.85735 8.28449 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.022213 B = 0.002445 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.232484 B =11448.600433 C =12620.751023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.030 3.970 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.491 4.491 8 H 0.088 0.912 9 C 0.066 3.934 10 C -0.202 4.202 11 C -0.100 4.100 12 C -0.187 4.187 13 C -0.128 4.128 14 C 0.519 3.481 15 O -0.533 6.533 16 O -0.345 6.345 17 C 0.014 3.986 18 C 0.397 3.603 19 O -0.464 6.464 20 C -0.222 4.222 21 C -0.045 4.045 22 C -0.133 4.133 23 C -0.042 4.042 24 C -0.168 4.168 25 C 0.126 3.874 26 F -0.141 7.141 27 C -0.118 4.118 28 H 0.289 0.711 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.162 0.838 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.137 -7.404 13.804 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.806 3.194 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.520 4.520 8 H 0.106 0.894 9 C 0.063 3.937 10 C -0.222 4.222 11 C -0.118 4.118 12 C -0.206 4.206 13 C -0.130 4.130 14 C 0.367 3.633 15 O -0.424 6.424 16 O -0.262 6.262 17 C -0.060 4.060 18 C 0.276 3.724 19 O -0.340 6.340 20 C -0.224 4.224 21 C -0.063 4.063 22 C -0.151 4.151 23 C -0.059 4.059 24 C -0.186 4.186 25 C 0.106 3.894 26 F -0.120 7.120 27 C -0.137 4.137 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.178 0.822 35 H 0.191 0.809 36 H 0.197 0.803 37 H 0.179 0.821 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.186 -7.530 13.641 22.467 hybrid contribution 0.434 0.489 -0.366 0.749 sum -15.753 -7.040 13.275 21.770 Atomic orbital electron populations 1.69867 1.09238 1.30857 1.35014 1.26876 0.95458 1.04990 0.91161 0.85104 0.79596 0.75876 0.78844 1.17553 1.18934 1.19278 1.19880 0.98658 0.91829 1.41609 0.89397 1.17925 0.91659 0.94057 0.90019 1.21498 1.03578 0.92463 1.04633 1.20933 0.95228 0.98166 0.97432 1.20913 1.00131 0.95389 1.04205 1.19043 0.95577 0.96030 1.02324 1.21652 0.82729 0.80972 0.77981 1.90733 1.65691 1.31819 1.54205 1.86651 1.42334 1.34695 1.62481 1.23563 0.87985 0.97725 0.96763 1.22394 0.82941 0.89273 0.77840 1.90621 1.57137 1.42405 1.43791 1.20303 1.00428 0.94752 1.06935 1.21752 0.94303 0.97411 0.92884 1.21702 0.95712 0.99528 0.98119 1.21843 0.98479 0.90651 0.94941 1.21513 0.95088 1.03107 0.98912 1.18423 0.93892 0.81764 0.95323 1.91538 1.83730 1.52689 1.84029 1.21461 0.98038 0.95658 0.98587 0.89988 0.86501 0.84518 0.86127 0.85504 0.85739 0.82217 0.80854 0.80325 0.82067 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.20 10.97 21.83 0.24 -43.97 16 2 C 0.03 1.54 5.14 85.25 0.44 1.97 16 3 Si 0.99 38.13 29.59 68.60 2.03 40.16 16 4 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.49 -26.04 9.05 23.47 0.21 -25.83 16 8 H 0.09 4.39 7.91 -2.91 -0.02 4.37 16 9 C 0.07 3.54 5.57 -21.32 -0.12 3.43 16 10 C -0.20 -9.59 9.78 22.77 0.22 -9.37 16 11 C -0.10 -4.30 10.01 22.18 0.22 -4.08 16 12 C -0.19 -8.51 9.62 22.71 0.22 -8.29 16 13 C -0.13 -6.43 5.87 -20.14 -0.12 -6.54 16 14 C 0.52 23.77 7.90 70.34 0.56 24.33 16 15 O -0.53 -25.51 16.12 19.92 0.32 -25.19 16 16 O -0.34 -13.75 8.99 -49.77 -0.45 -14.19 16 17 C 0.01 0.39 4.56 71.24 0.33 0.71 16 18 C 0.40 11.61 7.19 27.98 0.20 11.81 16 19 O -0.46 -17.69 15.49 15.77 0.24 -17.44 16 20 C -0.22 -4.80 5.87 -20.12 -0.12 -4.92 16 21 C -0.05 -0.60 9.47 22.57 0.21 -0.38 16 22 C -0.13 -0.97 10.02 22.23 0.22 -0.75 16 23 C -0.04 -0.27 10.03 22.34 0.22 -0.05 16 24 C -0.17 -2.12 10.01 22.28 0.22 -1.89 16 25 C 0.13 2.73 7.29 22.74 0.17 2.90 16 26 F -0.14 -4.05 15.55 44.97 0.70 -3.35 16 27 C -0.12 -6.48 8.23 23.02 0.19 -6.29 16 28 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 29 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 30 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.12 5.10 7.59 -2.91 -0.02 5.08 16 32 H 0.13 3.03 8.08 -2.39 -0.02 3.01 16 33 H 0.12 3.05 8.08 -2.39 -0.02 3.03 16 34 H 0.16 1.51 7.05 -2.91 -0.02 1.49 16 35 H 0.17 0.13 8.06 -2.91 -0.02 0.11 16 36 H 0.18 -0.19 8.06 -2.91 -0.02 -0.22 16 37 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.11 6.58 5.77 -2.91 -0.02 6.56 16 Total: -1.00 -74.01 346.74 7.48 -66.53 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 1.11 Total: 20.70 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 3.28 Total: -23.25 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.24 Total: -43.97 kcal Atomic # 8 Polarization: -56.94 SS G_CDS: 0.12 Total: -56.82 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.70 Total: -3.35 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -74.01 7.48 -66.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919310516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.171 kcal (2) G-P(sol) polarization free energy of solvation -74.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds