Wall clock time and date at job start Tue Mar 31 2020 15:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48500 * 109.46567 * 239.99873 * 3 2 1 5 5 H 1.48500 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47069 * 119.99912 * 3 2 1 7 7 C 1.38809 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99633 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00254 * 0.02562 * 7 2 1 10 10 C 1.47860 * 126.94135 * 359.97089 * 9 7 2 11 11 C 1.56021 * 105.10370 * 182.02467 * 10 9 7 12 12 H 1.08994 * 116.25560 * 159.68002 * 11 10 9 13 13 C 1.57085 * 100.41718 * 33.04887 * 11 10 9 14 14 C 1.49286 * 126.94357 * 179.97438 * 9 7 2 15 15 H 1.09001 * 116.15094 * 16.68524 * 14 9 7 16 16 C 1.55962 * 105.03817 * 246.32665 * 14 9 7 17 17 N 1.47868 * 105.13153 * 290.22471 * 16 14 9 18 18 C 1.34774 * 126.94680 * 180.63285 * 17 16 14 19 19 O 1.21702 * 120.00039 * 179.68036 * 18 17 16 20 20 C 1.46579 * 119.99714 * 359.68681 * 18 17 16 21 21 S 1.75836 * 125.46027 * 354.06667 * 20 18 17 22 22 C 1.70617 * 91.56171 * 179.97438 * 21 20 18 23 23 C 1.33808 * 110.95664 * 0.02562 * 22 21 20 24 24 C 1.36653 * 125.46015 * 174.02971 * 20 18 17 25 25 C 1.50700 * 123.34735 * 0.03324 * 24 20 18 26 26 F 1.39894 * 109.47356 * 304.18816 * 25 24 20 27 27 F 1.39904 * 109.47304 * 64.18639 * 25 24 20 28 28 H 0.97006 * 120.00174 * 359.97438 * 1 2 3 29 29 H 1.09004 * 110.31791 * 63.12065 * 10 9 7 30 30 H 1.09000 * 110.40713 * 300.97296 * 10 9 7 31 31 H 1.09000 * 112.36607 * 64.06869 * 13 11 10 32 32 H 1.08998 * 112.37031 * 191.51198 * 13 11 10 33 33 H 1.08994 * 111.47415 * 170.69818 * 16 14 9 34 34 H 1.08997 * 109.12542 * 48.54390 * 16 14 9 35 35 H 1.08001 * 124.52007 * 179.73465 * 22 21 20 36 36 H 1.08007 * 122.45187 * 179.97438 * 23 22 21 37 37 H 1.09003 * 109.46992 * 184.18418 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1423 -2.5668 0.0006 11 6 -0.3639 -4.1102 0.0538 12 1 -1.3412 -4.4453 0.4011 13 6 0.8740 -4.5454 0.9173 14 6 1.9101 -3.7617 0.0005 15 1 2.9606 -3.8367 0.2815 16 6 1.5121 -4.3709 -1.3789 17 7 0.0510 -4.5837 -1.2998 18 6 -0.7446 -5.1051 -2.2545 19 8 -1.9381 -5.2291 -2.0513 20 6 -0.1723 -5.5231 -3.5377 21 16 1.4947 -5.2764 -4.0398 22 6 1.2049 -6.0380 -5.5388 23 6 -0.0674 -6.4417 -5.6324 24 6 -0.8486 -6.1675 -4.5350 25 6 -2.3059 -6.5396 -4.4415 26 9 -2.5158 -7.3188 -3.2988 27 9 -3.0799 -5.3770 -4.3617 28 1 -0.4851 0.8401 0.0004 29 1 -0.5739 -2.1537 -0.9111 30 1 -0.5831 -2.0908 0.8766 31 1 0.8359 -4.1426 1.9295 32 1 1.0245 -5.6249 0.9123 33 1 2.0230 -5.3166 -1.5598 34 1 1.7482 -3.6555 -2.1667 35 1 1.9479 -6.1718 -6.3111 36 1 -0.4524 -6.9465 -6.5062 37 1 -2.5934 -7.1075 -5.3264 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032757883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:57 Heat of formation + Delta-G solvation = -32.519402 kcal Electronic energy + Delta-G solvation = -26516.106728 eV Core-core repulsion = 22444.126534 eV Total energy + Delta-G solvation = -4071.980193 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.58851 -46.58905 -40.10917 -38.54525 -37.15769 -33.71543 -31.74703 -30.34686 -29.13133 -28.65689 -27.35562 -25.27552 -23.89204 -23.12265 -21.66873 -20.03453 -19.31731 -19.03712 -18.08429 -17.13602 -16.87213 -16.50506 -16.31255 -15.70710 -15.48862 -14.98882 -14.54176 -14.36196 -13.90948 -13.61428 -13.40706 -13.21936 -12.95055 -12.81955 -12.57562 -12.39488 -12.19473 -12.00417 -11.74499 -11.51382 -11.32894 -11.05630 -10.88773 -10.85172 -10.62569 -10.60035 -10.25734 -10.13038 -9.70456 -9.64562 -9.03639 -8.74978 -8.74858 -8.06386 -6.99139 -5.80910 -3.16501 0.37837 1.33957 1.80654 2.14042 3.21457 3.35172 3.39255 3.41762 3.42447 3.92342 4.25972 4.37713 4.58182 4.82875 4.98468 5.04634 5.10733 5.19686 5.25631 5.30393 5.49205 5.54615 5.65007 5.71737 5.77486 5.93849 5.98973 6.04783 6.22290 6.34583 6.39803 6.51579 6.61818 7.37709 7.44466 7.68091 7.94248 8.05237 8.45852 9.05171 9.66211 10.34397 11.30932 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.004209 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.305534 B = 6650.063295 C = 6973.615368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.593 5.593 10 C 0.173 3.827 11 C 0.103 3.897 12 H 0.116 0.884 13 C -0.154 4.154 14 C 0.149 3.851 15 H 0.110 0.890 16 C 0.066 3.934 17 N -0.600 5.600 18 C 0.590 3.410 19 O -0.519 6.519 20 C -0.207 4.207 21 S 0.268 5.732 22 C -0.265 4.265 23 C -0.125 4.125 24 C -0.135 4.135 25 C 0.343 3.657 26 F -0.190 7.190 27 F -0.188 7.188 28 H 0.256 0.744 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -14.951 -9.204 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.317 5.317 10 C 0.048 3.952 11 C 0.001 3.999 12 H 0.133 0.867 13 C -0.194 4.194 14 C 0.039 3.961 15 H 0.128 0.872 16 C -0.061 4.061 17 N -0.334 5.334 18 C 0.376 3.624 19 O -0.397 6.397 20 C -0.329 4.329 21 S 0.538 5.462 22 C -0.403 4.403 23 C -0.156 4.156 24 C -0.152 4.152 25 C 0.287 3.713 26 F -0.172 7.172 27 F -0.169 7.169 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.187 0.813 36 H 0.163 0.837 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.770 -14.045 -8.499 16.844 hybrid contribution -0.769 0.297 -1.027 1.317 sum 3.001 -13.748 -9.526 16.993 Atomic orbital electron populations 1.69905 1.04989 1.25615 1.55826 1.24837 0.95675 0.97789 1.01722 0.86186 0.78459 0.83077 0.77911 1.21113 1.21577 1.21022 1.18991 0.90393 0.81933 1.45118 0.90078 1.45192 1.01395 0.99196 1.85878 1.21960 0.84646 0.87021 1.01567 1.24394 0.98128 0.97603 0.79818 0.86652 1.24517 0.96737 0.98930 0.99231 1.23376 0.96638 0.86110 0.89939 0.87235 1.23495 0.80178 0.99263 1.03119 1.49049 1.08794 1.60057 1.15471 1.16474 0.85832 0.78439 0.81629 1.90877 1.13632 1.55729 1.79459 1.24848 0.99047 1.08733 1.00277 1.83737 1.05922 1.50670 1.05871 1.25579 1.01428 1.07616 1.05640 1.19561 0.92990 1.04081 0.98921 1.19981 0.96987 1.03330 0.94862 1.19722 0.85382 0.79285 0.86922 1.93025 1.95383 1.74409 1.54338 1.93051 1.76082 1.50930 1.96878 0.93391 0.93305 0.92304 0.89570 0.91288 0.92005 0.90661 0.81265 0.83706 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 10.56 55.49 0.59 -25.94 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.24 -6.15 10.37 -15.06 -0.16 -6.30 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.57 16 9 N -0.59 -13.96 3.06 -155.16 -0.48 -14.43 16 10 C 0.17 4.14 4.79 -1.68 -0.01 4.13 16 11 C 0.10 2.00 5.18 -62.55 -0.32 1.68 16 12 H 0.12 2.21 8.06 -51.93 -0.42 1.79 16 13 C -0.15 -2.56 6.94 -21.18 -0.15 -2.70 16 14 C 0.15 2.68 5.55 -61.46 -0.34 2.34 16 15 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 16 C 0.07 1.11 4.58 -1.71 -0.01 1.10 16 17 N -0.60 -11.41 2.94 -158.38 -0.47 -11.87 16 18 C 0.59 11.66 7.77 -12.90 -0.10 11.56 16 19 O -0.52 -11.67 13.44 5.19 0.07 -11.60 16 20 C -0.21 -3.39 6.36 -36.79 -0.23 -3.62 16 21 S 0.27 3.35 18.73 -107.50 -2.01 1.33 16 22 C -0.27 -2.69 10.92 29.18 0.32 -2.37 16 23 C -0.13 -1.35 9.92 -41.42 -0.41 -1.76 16 24 C -0.13 -1.93 5.37 -105.48 -0.57 -2.49 16 25 C 0.34 4.89 4.98 36.01 0.18 5.07 16 26 F -0.19 -3.21 15.56 2.25 0.04 -3.18 16 27 F -0.19 -3.33 15.99 2.25 0.04 -3.30 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.05 1.36 7.68 -51.93 -0.40 0.96 16 30 H 0.06 1.54 7.46 -51.93 -0.39 1.15 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.85 7.17 -51.93 -0.37 0.48 16 34 H 0.08 1.36 6.98 -51.93 -0.36 1.00 16 35 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.15 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.11 1.01 8.06 -51.93 -0.42 0.59 16 LS Contribution 321.43 15.07 4.84 4.84 Total: -1.00 -33.06 321.43 -8.32 -41.38 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.02 Total: -0.03 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -1.89 Total: 6.44 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.35 Total: -52.24 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.07 Total: -11.60 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.07 Total: -6.48 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -2.01 Total: 1.33 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.06 -8.32 -41.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032757883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.860 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds