Wall clock time and date at job start Tue Mar 31 2020 15:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48500 * 109.46567 * 239.99873 * 3 2 1 5 5 H 1.48500 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47069 * 119.99912 * 3 2 1 7 7 C 1.38809 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99633 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00254 * 0.02562 * 7 2 1 10 10 C 1.47860 * 126.94135 * 359.97089 * 9 7 2 11 11 C 1.56021 * 105.10370 * 182.02467 * 10 9 7 12 12 H 1.08994 * 116.25560 * 159.68002 * 11 10 9 13 13 C 1.57085 * 100.41718 * 33.04887 * 11 10 9 14 14 C 1.49286 * 126.94357 * 179.97438 * 9 7 2 15 15 H 1.09001 * 116.15094 * 16.68524 * 14 9 7 16 16 C 1.55962 * 105.03817 * 246.32665 * 14 9 7 17 17 N 1.47868 * 105.13153 * 290.22471 * 16 14 9 18 18 C 1.34774 * 126.94680 * 180.63285 * 17 16 14 19 19 O 1.21702 * 120.00039 * 179.68036 * 18 17 16 20 20 C 1.46579 * 119.99714 * 359.68681 * 18 17 16 21 21 S 1.75836 * 125.46027 * 354.06667 * 20 18 17 22 22 C 1.70617 * 91.56171 * 179.97438 * 21 20 18 23 23 C 1.33808 * 110.95664 * 0.02562 * 22 21 20 24 24 C 1.36653 * 125.46015 * 174.02971 * 20 18 17 25 25 C 1.50700 * 123.34735 * 0.03324 * 24 20 18 26 26 F 1.39894 * 109.47356 * 304.18816 * 25 24 20 27 27 F 1.39904 * 109.47304 * 64.18639 * 25 24 20 28 28 H 0.97006 * 120.00174 * 359.97438 * 1 2 3 29 29 H 1.09004 * 110.31791 * 63.12065 * 10 9 7 30 30 H 1.09000 * 110.40713 * 300.97296 * 10 9 7 31 31 H 1.09000 * 112.36607 * 64.06869 * 13 11 10 32 32 H 1.08998 * 112.37031 * 191.51198 * 13 11 10 33 33 H 1.08994 * 111.47415 * 170.69818 * 16 14 9 34 34 H 1.08997 * 109.12542 * 48.54390 * 16 14 9 35 35 H 1.08001 * 124.52007 * 179.73465 * 22 21 20 36 36 H 1.08007 * 122.45187 * 179.97438 * 23 22 21 37 37 H 1.09003 * 109.46992 * 184.18418 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1423 -2.5668 0.0006 11 6 -0.3639 -4.1102 0.0538 12 1 -1.3412 -4.4453 0.4011 13 6 0.8740 -4.5454 0.9173 14 6 1.9101 -3.7617 0.0005 15 1 2.9606 -3.8367 0.2815 16 6 1.5121 -4.3709 -1.3789 17 7 0.0510 -4.5837 -1.2998 18 6 -0.7446 -5.1051 -2.2545 19 8 -1.9381 -5.2291 -2.0513 20 6 -0.1723 -5.5231 -3.5377 21 16 1.4947 -5.2764 -4.0398 22 6 1.2049 -6.0380 -5.5388 23 6 -0.0674 -6.4417 -5.6324 24 6 -0.8486 -6.1675 -4.5350 25 6 -2.3059 -6.5396 -4.4415 26 9 -2.5158 -7.3188 -3.2988 27 9 -3.0799 -5.3770 -4.3617 28 1 -0.4851 0.8401 0.0004 29 1 -0.5739 -2.1537 -0.9111 30 1 -0.5831 -2.0908 0.8766 31 1 0.8359 -4.1426 1.9295 32 1 1.0245 -5.6249 0.9123 33 1 2.0230 -5.3166 -1.5598 34 1 1.7482 -3.6555 -2.1667 35 1 1.9479 -6.1718 -6.3111 36 1 -0.4524 -6.9465 -6.5062 37 1 -2.5934 -7.1075 -5.3264 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032757883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:56 Heat of formation + Delta-G solvation = -53.667917 kcal Electronic energy + Delta-G solvation = -26517.023796 eV Core-core repulsion = 22444.126534 eV Total energy + Delta-G solvation = -4072.897262 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.77669 -47.81448 -41.62207 -39.79813 -38.42151 -35.52584 -33.46093 -31.57036 -30.59691 -30.31800 -28.52569 -27.03470 -25.44210 -24.25953 -23.03031 -21.56879 -20.79971 -20.12973 -19.56446 -18.53338 -18.06888 -18.00020 -17.68331 -17.07140 -16.83323 -16.46484 -16.06457 -15.64194 -15.32382 -15.00440 -14.90923 -14.58692 -14.18252 -13.96603 -13.89623 -13.64393 -13.61460 -13.39635 -13.31266 -13.13926 -12.88900 -12.67625 -12.57818 -12.23749 -12.15879 -12.10106 -11.92059 -11.59873 -11.55853 -11.14808 -10.73342 -10.09499 -9.69574 -9.55249 -8.94743 -7.85330 -5.22319 -0.67726 0.32759 0.90228 1.23006 1.47281 1.50357 1.56584 1.81303 2.03754 2.48093 2.93267 3.25853 3.32019 3.35985 3.48101 3.69051 3.79899 3.87162 3.97848 4.13308 4.14564 4.22336 4.34935 4.42455 4.57320 4.72344 4.78959 4.84924 4.97926 5.08200 5.09164 5.15629 5.19745 5.42727 5.49039 5.63527 6.07115 6.49319 6.99734 7.00822 7.69203 8.39293 9.25876 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.004209 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.305534 B = 6650.063295 C = 6973.615368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.071 4.071 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.305 1.305 6 H -0.271 1.271 7 C -0.232 4.232 8 H 0.101 0.899 9 N -0.612 5.612 10 C 0.189 3.811 11 C 0.102 3.898 12 H 0.111 0.889 13 C -0.130 4.130 14 C 0.144 3.856 15 H 0.145 0.855 16 C 0.075 3.925 17 N -0.607 5.607 18 C 0.581 3.419 19 O -0.564 6.564 20 C -0.267 4.267 21 S 0.281 5.719 22 C -0.236 4.236 23 C -0.129 4.129 24 C -0.130 4.130 25 C 0.325 3.675 26 F -0.211 7.211 27 F -0.216 7.216 28 H 0.244 0.756 29 H -0.006 1.006 30 H 0.021 0.979 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.211 0.789 36 H 0.188 0.812 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 -17.416 -11.282 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.360 4.360 8 H 0.118 0.882 9 N -0.336 5.336 10 C 0.063 3.937 11 C -0.001 4.001 12 H 0.129 0.871 13 C -0.169 4.169 14 C 0.037 3.963 15 H 0.162 0.838 16 C -0.050 4.050 17 N -0.339 5.339 18 C 0.370 3.630 19 O -0.445 6.445 20 C -0.388 4.388 21 S 0.551 5.449 22 C -0.374 4.374 23 C -0.157 4.157 24 C -0.148 4.148 25 C 0.269 3.731 26 F -0.192 7.192 27 F -0.197 7.197 28 H 0.053 0.947 29 H 0.012 0.988 30 H 0.039 0.961 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.205 0.795 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.091 -16.555 -10.573 20.884 hybrid contribution -1.737 0.974 -0.500 2.053 sum 5.353 -15.581 -11.073 19.850 Atomic orbital electron populations 1.70169 1.06781 1.25304 1.58523 1.25702 0.96334 1.01357 1.02921 0.85144 0.76969 0.78682 0.78493 1.20071 1.23195 1.19704 1.19531 0.91388 0.82834 1.42292 0.88184 1.45420 1.01288 1.01080 1.85791 1.21499 0.85194 0.89858 0.97191 1.24210 0.99704 0.94376 0.81807 0.87130 1.24429 0.93550 1.00760 0.98178 1.23817 0.98495 0.83041 0.90933 0.83785 1.23421 0.79107 1.00806 1.01688 1.49120 1.09790 1.59934 1.15074 1.17066 0.85478 0.77703 0.82766 1.90829 1.15455 1.57652 1.80573 1.24656 1.01910 1.12532 0.99746 1.83523 1.03194 1.50667 1.07484 1.26068 1.02024 1.04534 1.04763 1.19899 0.92717 1.04169 0.98960 1.20376 0.97072 1.01991 0.95370 1.20601 0.85625 0.78835 0.87997 1.92973 1.95507 1.74762 1.55943 1.92989 1.76876 1.52795 1.97030 0.94713 0.98789 0.96071 0.89596 0.87717 0.87903 0.92108 0.77163 0.79528 0.81248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.92 10.56 21.65 0.23 -58.69 16 2 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 3 Si 0.98 44.86 29.55 68.60 2.03 46.89 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.23 -12.10 10.37 84.03 0.87 -11.23 16 8 H 0.10 4.73 7.83 -2.91 -0.02 4.71 16 9 N -0.61 -29.19 3.06 -644.82 -1.97 -31.16 16 10 C 0.19 9.63 4.79 87.17 0.42 10.04 16 11 C 0.10 4.12 5.18 46.93 0.24 4.37 16 12 H 0.11 4.52 8.06 -2.39 -0.02 4.50 16 13 C -0.13 -4.09 6.94 34.19 0.24 -3.85 16 14 C 0.14 4.90 5.55 47.64 0.26 5.16 16 15 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 16 C 0.08 2.40 4.58 87.14 0.40 2.80 16 17 N -0.61 -23.38 2.94 -773.22 -2.27 -25.65 16 18 C 0.58 23.64 7.77 86.42 0.67 24.31 16 19 O -0.56 -26.82 13.44 -4.36 -0.06 -26.88 16 20 C -0.27 -8.53 6.36 24.08 0.15 -8.38 16 21 S 0.28 6.23 18.73 -56.49 -1.06 5.17 16 22 C -0.24 -3.61 10.92 66.81 0.73 -2.88 16 23 C -0.13 -2.19 9.92 21.08 0.21 -1.98 16 24 C -0.13 -3.45 5.37 -20.42 -0.11 -3.56 16 25 C 0.32 8.92 4.98 71.24 0.35 9.27 16 26 F -0.21 -7.15 15.56 44.97 0.70 -6.45 16 27 F -0.22 -7.83 15.99 44.97 0.72 -7.11 16 28 H 0.24 14.84 8.31 -92.70 -0.77 14.07 16 29 H -0.01 -0.37 7.68 -2.38 -0.02 -0.39 16 30 H 0.02 1.21 7.46 -2.39 -0.02 1.19 16 31 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.10 2.47 7.17 -2.39 -0.02 2.45 16 34 H 0.06 2.15 6.98 -2.39 -0.02 2.13 16 35 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 37 H 0.17 2.52 8.06 -2.39 -0.02 2.50 16 Total: -1.00 -80.39 321.43 4.33 -76.06 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.11 Total: 7.24 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 4.91 Total: 20.59 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -4.02 Total: -115.50 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.06 Total: -26.88 kcal Atomic # 9 Polarization: -14.98 SS G_CDS: 1.42 Total: -13.57 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.06 Total: 5.17 kcal Total: -80.39 4.33 -76.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032757883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.389 kcal (2) G-P(sol) polarization free energy of solvation -80.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds